NO12G02320, NO12G02320 (gene) Nannochloropsis oceanica

Overview
NameNO12G02320
Unique NameNO12G02320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1520
Alignment locationchr12:666385..667904 -

Link to JBrowse

Properties
Property NameValue
DescriptionAP-2 complex subunit sigma
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:666385..667904 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
Vocabulary: Cellular Component
TermDefinition
GO:0005886plasma membrane
GO:0005737cytoplasm
Homology
[Close]
BLAST of NO12G02320 vs. NCBI_GenBank
Match: XP_002183216.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45434.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 224.9 bits (572), Expect = 2.700e-55
Identity = 109/152 (71.71%), Postives = 132/152 (86.84%), Query Frame = 0 
Query:  102 MIRFLLLQNRQGKTRLSKWYVPPPT---------EAEKFRLEAEVHKLIVSRDRKYTNFVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYE 245
            MIRF LLQNRQGKTRLSKWYVPPP+         EAEK R+EAEVH+L+ +RD+KYTNF+E+ NYKLIYRRYAGL+F++ VD+ +NEL+YLE+IHLFVELLD +F NVCELDIVFNFNKVYSILDEF+LAGEI+ETSKREIL+R++ ++  E
Sbjct:    1 MIRFFLLQNRQGKTRLSKWYVPPPSTQNGSTVSPEAEKVRIEAEVHRLVTARDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDLQENELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEFMLAGEIEETSKREILDRVKLLEKME 152
[Close]
BLAST of NO12G02320 vs. NCBI_GenBank
Match: XP_008895111.1 (AP-2 complex subunit sigma-1 [Phytophthora parasitica INRA-310] >ETI38769.1 AP-2 complex subunit sigma-1 [Phytophthora parasitica P1569] >ETK78985.1 AP-2 complex subunit sigma-1 [Phytophthora parasitica] >ETL32413.1 AP-2 complex subunit sigma-1 [Phytophthora parasitica] >ETL85659.1 AP-2 complex subunit sigma-1 [Phytophthora parasitica] >ETM38818.1 AP-2 complex subunit sigma-1 [Phytophthora parasitica] >ETN19245.1 AP-2 complex subunit sigma-1 [Phytophthora parasitica INRA-310] >ETO67472.1 AP-2 complex subunit sigma-1 [Phytophthora parasitica P1976] >ETP08682.1 AP-2 complex subunit sigma-1 [Phytophthora parasitica CJ01A1] >ETP36719.1 AP-2 complex subunit sigma-1 [Phytophthora parasitica P10297] >KUF77809.1 AP-2 complex subunit sigma [Phytophthora nicotianae] >KUF83021.1 AP-2 complex subunit sigma [Phytophthora nicotianae])

HSP 1 Score: 222.2 bits (565), Expect = 1.700e-54
Identity = 107/143 (74.83%), Postives = 127/143 (88.81%), Query Frame = 0 
Query:  102 MIRFLLLQNRQGKTRLSKWYVPPPTEAEKFRLEAEVHKLIVSRDRKYTNFVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYE 245
            MIRF LLQNRQGKTRLSKWYVPPP + EK RLE E+H+L+V+RD K+TNF+E +NYKLIYRRYAGL+F LGVD+T NEL  LE+IHLFVELLD+ F NVCELDIVFNFNKVYS+LDE+IL GE+QETSKRE+L+RIR+++  E
Sbjct:   14 MIRFFLLQNRQGKTRLSKWYVPPPEDQEKARLETEIHRLVVARDAKHTNFIEFRNYKLIYRRYAGLFFILGVDLTANELLGLETIHLFVELLDQQFANVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 156
[Close]
BLAST of NO12G02320 vs. NCBI_GenBank
Match: CCI47649.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 220.7 bits (561), Expect = 5.100e-54
Identity = 110/172 (63.95%), Postives = 137/172 (79.65%), Query Frame = 0 
Query:   78 LAPFSSIL-----TTRTDRNECTESARQEMIRFLLLQNRQGKTRLSKWYVPPPTEAEKFRLEAEVHKLIVSRDRKYTNFVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYE 245
            L PF S++     T R + +        +MIRF L+QNRQGKTRLSKWYVP P + EKFRLE E+H+L++SRD K+TNF+E ++YKLIYRRYAGL+F LGVD+  NEL  LE+IHLFVELLD+ F NVCELDIVFNFNKVYS+LDE+IL GE+QETSKRE+L+RIR+++  E
Sbjct:    4 LIPFHSLILVTVCTVRRNSSSPLNKIAIDMIRFFLMQNRQGKTRLSKWYVPAPDDQEKFRLEHEIHRLVISRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 175
[Close]
BLAST of NO12G02320 vs. NCBI_GenBank
Match: GAY03336.1 (AP-2 complex subunit sigma-1 [Pythium insidiosum])

HSP 1 Score: 220.3 bits (560), Expect = 6.600e-54
Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = 0 
Query:  102 MIRFLLLQNRQGKTRLSKWYVPPPTEAEKFRLEAEVHKLIVSRDRKYTNFVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYE 245
            MIRF LLQNRQGKTRLSKWYVPPP +  K RLEAE+H+L+V+RD K+TNF+E ++YKLIYRRYAGL+F LGVDV  NEL  LE+IHLFVELLD+ F NVCELDIVFNFNKVYS+LDE+IL GEIQETSKRE+LERIR+++  E
Sbjct:    1 MIRFFLLQNRQGKTRLSKWYVPPPDDQGKTRLEAEIHRLVVARDAKHTNFIEFRSYKLIYRRYAGLFFILGVDVNANELLCLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEIQETSKREMLERIRELEKLE 143
[Close]
BLAST of NO12G02320 vs. NCBI_GenBank
Match: XP_002292590.1 (AP17, clathrin adaptor complex AP2 small chain, partial [Thalassiosira pseudonana CCMP1335] >EED89786.1 AP17, clathrin adaptor complex AP2 small chain, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 219.5 bits (558), Expect = 1.100e-53
Identity = 105/139 (75.54%), Postives = 126/139 (90.65%), Query Frame = 0 
Query:  103 IRFLLLQNRQGKTRLSKWYVPPPTEAEKFRLEAEVHKLIVSRDRKYTNFVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQ 242
            IRF LLQNRQGKTRLSKWY PPP  +EK R+E EVH+L+ SRD+KYTNF+E+ NYKLIYRRYAGL+F++ VDV DNEL+YLESIHLFVELLD +F NVCELDIVFNFNKVYSILDE++LAGEI+ETSK+EIL+R++ ++
Sbjct:    2 IRFFLLQNRQGKTRLSKWYDPPP-PSEKARIETEVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNKVYSILDEYMLAGEIEETSKKEILDRVKFLE 139
[Close]
BLAST of NO12G02320 vs. NCBI_GenBank
Match: CCA16056.1 (conserved unknown protein putative [Albugo laibachii Nc14])

HSP 1 Score: 219.2 bits (557), Expect = 1.500e-53
Identity = 106/144 (73.61%), Postives = 127/144 (88.19%), Query Frame = 0 
Query:  101 EMIRFLLLQNRQGKTRLSKWYVPPPTEAEKFRLEAEVHKLIVSRDRKYTNFVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYE 245
            +MIRF LLQNRQGKTRLSKWYVP P + EKFRLE E+H+L+VSRD K+TNF+E ++YKLIYRRYAGL+F LGVD+  NEL  LE+IHLFVELLD+ F NVCELDIVFNFNKVYS+LDE+IL GE+QETSKRE+L+RIR+++  E
Sbjct:   54 DMIRFFLLQNRQGKTRLSKWYVPAPDDQEKFRLENEIHRLVVSRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 197
[Close]
BLAST of NO12G02320 vs. NCBI_GenBank
Match: GAX19458.1 (AP-2 complex subunit sigma-1 [Fistulifera solaris] >GAX16453.1 AP-2 complex subunit sigma-1 [Fistulifera solaris])

HSP 1 Score: 219.2 bits (557), Expect = 1.500e-53
Identity = 107/151 (70.86%), Postives = 127/151 (84.11%), Query Frame = 0 
Query:  102 MIRFLLLQNRQGKTRLSKWYVPPPT--------EAEKFRLEAEVHKLIVSRDRKYTNFVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYE 245
            MIRF LLQNRQGKTRLSKWY PP          E EK R+EAEVH+L+ +RD+KYTNF+E+ NYKLIYRRYAGL+F++ VDV DNEL+YLE+IHLFVELLD +F NVCELDIVF+FNKVYSILDEF+LAGEI+ETSKREIL+R++ +   E
Sbjct:    1 MIRFFLLQNRQGKTRLSKWYTPPTVANNIGTTPELEKVRMEAEVHRLVTARDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVNDNELSYLETIHLFVELLDSYFNNVCELDIVFHFNKVYSILDEFMLAGEIEETSKREILDRVKLLDKME 151
[Close]
BLAST of NO12G02320 vs. NCBI_GenBank
Match: XP_008606512.1 (AP-2 complex subunit sigma [Saprolegnia diclina VS20] >XP_012204074.1 AP-2 complex subunit sigma [Saprolegnia parasitica CBS 223.65] >XP_012213371.1 AP-2 complex subunit sigma [Saprolegnia parasitica CBS 223.65] >EQC40038.1 AP-2 complex subunit sigma [Saprolegnia diclina VS20] >KDO15922.1 AP-2 complex subunit sigma [Saprolegnia parasitica CBS 223.65] >KDO25239.1 AP-2 complex subunit sigma [Saprolegnia parasitica CBS 223.65] >OQS00299.1 hypothetical protein THRCLA_21708 [Thraustotheca clavata])

HSP 1 Score: 218.4 bits (555), Expect = 2.500e-53
Identity = 105/143 (73.43%), Postives = 128/143 (89.51%), Query Frame = 0 
Query:  102 MIRFLLLQNRQGKTRLSKWYVPPPTEAEKFRLEAEVHKLIVSRDRKYTNFVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYE 245
            MIRF LLQNRQGKTRLSKWYVPPP + EK RLE+E+H+L+V+RD K+TNF+E ++YKLIYRRYAGL+F LGVD+  NEL  LE+IHLFVELLD+ F+NVCELDIVFNFNKVYS+LDE+IL GE+QETSKRE+L+RIR+++  E
Sbjct:    1 MIRFFLLQNRQGKTRLSKWYVPPPPDLEKPRLESEIHRLVVARDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLCLETIHLFVELLDQQFQNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 143
[Close]
BLAST of NO12G02320 vs. NCBI_GenBank
Match: XP_024575847.1 (ap-2 complex subunit sigma-1 [Plasmopara halstedii] >CEG39478.1 ap-2 complex subunit sigma-1 [Plasmopara halstedii])

HSP 1 Score: 218.0 bits (554), Expect = 3.300e-53
Identity = 105/143 (73.43%), Postives = 127/143 (88.81%), Query Frame = 0 
Query:  102 MIRFLLLQNRQGKTRLSKWYVPPPTEAEKFRLEAEVHKLIVSRDRKYTNFVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYE 245
            MIRF LLQNRQGKTRLSK+YVPPP + EK RLE E+H+L+V+RD K+TNF+E +NYKLIYRRYAGL+F LGVD++ NEL  LE+IHLFVELLD+ F NVCELDIVFNFNKVYS+LDEF+L GE+QETSKRE+L+RIR+++  E
Sbjct:    1 MIRFFLLQNRQGKTRLSKYYVPPPEDQEKARLETEIHRLVVARDAKHTNFIEFRNYKLIYRRYAGLFFILGVDLSANELLGLETIHLFVELLDQQFANVCELDIVFNFNKVYSMLDEFVLGGEVQETSKREMLDRIRELEKLE 143
[Close]
BLAST of NO12G02320 vs. NCBI_GenBank
Match: OQR87043.1 (hypothetical protein ACHHYP_09586 [Achlya hypogyna])

HSP 1 Score: 218.0 bits (554), Expect = 3.300e-53
Identity = 105/143 (73.43%), Postives = 127/143 (88.81%), Query Frame = 0 
Query:  102 MIRFLLLQNRQGKTRLSKWYVPPPTEAEKFRLEAEVHKLIVSRDRKYTNFVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYE 245
            MIRF LLQNRQGKTRLSKWYVPPP + EK RLE E+H+L+V+RD K+TNF+E ++YKLIYRRYAGL+F LGVD+  NEL  LE+IHLFVELLD+ F+NVCELDIVFNFNKVYS+LDE+IL GE+QETSKRE+L+RIR+++  E
Sbjct:    1 MIRFFLLQNRQGKTRLSKWYVPPPPDLEKPRLEGEIHRLVVARDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLCLETIHLFVELLDQQFQNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 143
The following BLAST results are available for this feature:
BLAST of NO12G02320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002183216.12.700e-5571.71predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_008895111.11.700e-5474.83AP-2 complex subunit sigma-1 [Phytophthora parasit... [more]
CCI47649.15.100e-5463.95unnamed protein product [Albugo candida][more]
GAY03336.16.600e-5475.52AP-2 complex subunit sigma-1 [Pythium insidiosum][more]
XP_002292590.11.100e-5375.54AP17, clathrin adaptor complex AP2 small chain, pa... [more]
CCA16056.11.500e-5373.61conserved unknown protein putative [Albugo laibach... [more]
GAX19458.11.500e-5370.86AP-2 complex subunit sigma-1 [Fistulifera solaris]... [more]
XP_008606512.12.500e-5373.43AP-2 complex subunit sigma [Saprolegnia diclina VS... [more]
XP_024575847.13.300e-5373.43ap-2 complex subunit sigma-1 [Plasmopara halstedii... [more]
OQR87043.13.300e-5373.43hypothetical protein ACHHYP_09586 [Achlya hypogyna... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010166NSK010166Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02320.1NO12G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592405gene_5397Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02320.1NO12G02320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02320 ID=NO12G02320|Name=NO12G02320|organism=Nannochloropsis oceanica|type=gene|length=1520bp
CCCCTGTAGCTCCTCCTTCACCCACCCCTCTCTTTTTCTAAGACTCACAT
CAAAAATACACACCCCTGGCTGCCCGCAGGGCGGGCATACCCGCTAATAT
GTTTATATGTTATGTCTTTCATGTTTATGTTGCGCGCCATCGAAAATTAT
TCTCTGGTTTTTTTTTATCACGGTCATCGTGGAGAAAGTAATGAATGGAA
GATGACAACCAAGTTGAAGGCGAGAAAAGTCATTCTTTCTGTCTGTCTTC
CCCTCGTGCATCCTGGTAACCAAATAATTTGATCTTGCGCGGTTTGAAGA
TTCGAATGAAGAATGCTGATGCCGAGTGTAAAAATATGCGACGATGAGAC
CTGCGCAGTCAAAACGCTATGGCCCACTGCCTTTGCCGTCTCAGGTACCC
AGTGTCAGCCACAAGCTTTCACTCGTCTTCTTCATGTGCCCTGTGTTCGG
CGGTGGTGGTCGTCCACATCCATGATGGAAATGGGCCGCGCGGACGCGAT
GCCATCAGTGATGGAAAGCAAACCACCGTCTGTCGCTCTGATCTCATCTC
GGGCCCAGGTTCCTTGCGTGCATGTCCTTATCTGCCCCGGCTCACCCATC
TTGCTCCATTCTCGTCAATCTTAACCACGAGAACAGACAGAAACGAGTGC
ACGGAGAGCGCACGTCAAGAGATGgtaagtgttgactgcttgccgtgccc
atcatcgccaaggactttcaagacgccggctgctttccatgtctcaccac
ctgttccacccatgctcatgatcataccatcacacacgcccttaaacgct
ttcctttagATCCGCTTCTTGCTTCTGCAGAATCGGCAGGGCAAGACGCG
ACTGTCAAAGTGGTATGTGCCCCCGCCTACCGAGGCGGAGAAGTTCCGTC
TTGAGGCAGAAGTGCACAAGCTGATTGTGAGCCGGGACCGCAAGTACACC
AACTTTGTGGAGCACCAGAACTACAAGCTCATTTACCGGCGTTATGCGGG
CTTGTACTTTTCCCTGGGTGTGGATGTGACGGACAACGAGCTTGCCTACC
TCGAGTCCATCCACCTCTTCGTGGAGCTCCTTGACGAATTCTTCCGCAAC
GTCTGCGAGCTCGACATCGTCTTCAATTTCAACAAGgtcagtaagagaag
gggggcaaggtgactgagcaggacggtttacgactcagtttggttgtatc
gccgacgttcatcattgcctgcgtccttcgtttcccagctcgctctcacg
tacgttcttactgacccctgcactaacacttacagGTGTACTCTATTTTG
GACGAGTTCATCTTGGCGGGCGAGATTCAGGAGACAAGCAAGCGGGAAAT
TTTAGAACGGATCCGGGACATGCAGGCCTATGAGAAAGCCTCGGAGAAGT
GAAAGTCGAATCCGGAAAAATACAGCTAAACGTTGGGGGGAAAGGAGGAA
AGCATGATGCATGCGTGTAACCGCCCCATTTTTGTAAAGAAGAATCAAAA
AATGTCTGTAAAGCAGGAAA
back to top

protein sequence of NO12G02320.1

>NO12G02320.1-protein ID=NO12G02320.1-protein|Name=NO12G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MAHCLCRLRYPVSATSFHSSSSCALCSAVVVVHIHDGNGPRGRDAISDGK
QTTVCRSDLISGPGSLRACPYLPRLTHLAPFSSILTTRTDRNECTESARQ
EMIRFLLLQNRQGKTRLSKWYVPPPTEAEKFRLEAEVHKLIVSRDRKYTN
FVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNV
CELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYEKASEK*
back to top
Synonyms
Publications