NO12G02150, NO12G02150 (gene) Nannochloropsis oceanica

Overview
NameNO12G02150
Unique NameNO12G02150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2614
Alignment locationchr12:613552..616165 +

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Properties
Property NameValue
DescriptionAlba DNA/RNA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:613552..616165 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036882Alba-like_dom_sf
IPR002775DNA/RNA-bd_Alba-like
Homology
[Close]
BLAST of NO12G02150 vs. NCBI_GenBank
Match: XP_024361551.1 (ribonuclease P protein subunit p25-like [Physcomitrella patens] >XP_024361552.1 ribonuclease P protein subunit p25-like [Physcomitrella patens] >XP_024361553.1 ribonuclease P protein subunit p25-like [Physcomitrella patens] >XP_024361554.1 ribonuclease P protein subunit p25-like [Physcomitrella patens] >XP_024361555.1 ribonuclease P protein subunit p25-like [Physcomitrella patens] >XP_024361556.1 ribonuclease P protein subunit p25-like [Physcomitrella patens] >PNR29110.1 hypothetical protein PHYPA_027802 [Physcomitrella patens])

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 54/111 (48.65%), Postives = 80/111 (72.07%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLS 151
            +Y+ +   R + P   NE+R+T QG +++Y+ YA  L +++GA A+ LK MGRAI+KA+T+AEI+KR + GLHQ T IGS    ++W PLEEGL  +E+TR++S + ITLS
Sbjct:    3 RYQRVEKPRPEIPISENEIRITTQGKMRNYITYATTLLQDKGASAIVLKAMGRAINKAVTIAEIIKRRIAGLHQNTSIGSTDITDLWEPLEEGLLPLETTRHVSMITITLS 113
[Close]
BLAST of NO12G02150 vs. NCBI_GenBank
Match: XP_010061099.1 (PREDICTED: ribonuclease P protein subunit p25-like protein isoform X1 [Eucalyptus grandis] >XP_010061100.1 PREDICTED: ribonuclease P protein subunit p25-like protein isoform X1 [Eucalyptus grandis] >XP_010061101.1 PREDICTED: ribonuclease P protein subunit p25-like protein isoform X1 [Eucalyptus grandis] >XP_018732276.1 PREDICTED: ribonuclease P protein subunit p25-like protein isoform X1 [Eucalyptus grandis] >KCW67995.1 hypothetical protein EUGRSUZ_F01689 [Eucalyptus grandis] >KCW67996.1 hypothetical protein EUGRSUZ_F01689 [Eucalyptus grandis] >KCW67997.1 hypothetical protein EUGRSUZ_F01689 [Eucalyptus grandis])

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 52/112 (46.43%), Postives = 80/112 (71.43%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSK 152
            +Y+ +   R++ P   NE+R+T QG ++SY+ YAM L +E+G++ +  K MGRAI+K +T+ E++KR + GLHQ T IGS+   + W PLEEGL  +E+TR++S + ITLSK
Sbjct:    3 RYQRVEKPREETPIDENEIRITSQGRMRSYITYAMTLLQEKGSKEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSIGSIDITDTWEPLEEGLVTLETTRHVSMITITLSK 114
[Close]
BLAST of NO12G02150 vs. NCBI_GenBank
Match: XP_018732277.1 (PREDICTED: ribonuclease P protein subunit p25-like protein isoform X2 [Eucalyptus grandis])

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 52/112 (46.43%), Postives = 80/112 (71.43%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSK 152
            +Y+ +   R++ P   NE+R+T QG ++SY+ YAM L +E+G++ +  K MGRAI+K +T+ E++KR + GLHQ T IGS+   + W PLEEGL  +E+TR++S + ITLSK
Sbjct:    3 RYQRVEKPREETPIDENEIRITSQGRMRSYITYAMTLLQEKGSKEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSIGSIDITDTWEPLEEGLVTLETTRHVSMITITLSK 114
[Close]
BLAST of NO12G02150 vs. NCBI_GenBank
Match: GAQ88218.1 (hypothetical protein KFL_004100060 [Klebsormidium nitens])

HSP 1 Score: 119.0 bits (297), Expect = 1.600e-23
Identity = 53/111 (47.75%), Postives = 79/111 (71.17%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLS 151
            +Y+ +   R + P K NE+R+T QG +++Y+ Y++ + +E+GA  + LK MGRAI+K +T+AEILKR + GLHQ T IGS    + W PLEEGL  +E+TR++S + ITLS
Sbjct:    3 RYQRVEKPRVEEPIKENEIRITTQGKLRNYITYSLTMLQEKGASEIVLKAMGRAINKTVTIAEILKRRIVGLHQNTAIGSTDITDTWQPLEEGLQPIETTRHVSMITITLS 113
[Close]
BLAST of NO12G02150 vs. NCBI_GenBank
Match: PSC67986.1 (ribonuclease P subunit p25 [Micractinium conductrix])

HSP 1 Score: 119.0 bits (297), Expect = 1.600e-23
Identity = 56/114 (49.12%), Postives = 80/114 (70.18%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKDP 154
            +Y+ +A  R+      NEVR+T QG  +SY+ Y  +L  E+G  AV LK MG+AI+K +T+AEI+KR + GLHQ T I S+  K+ W P EEGL+R+E+TR++S + ITLSK+P
Sbjct:    3 RYQRVAMPREPEEHADNEVRITSQGKSRSYISYGTSLLTEKGHSAVVLKAMGKAINKTVTIAEIMKRRIVGLHQCTAISSVELKDHWEPKEEGLDRIETTRHVSVITITLSKEP 116
[Close]
BLAST of NO12G02150 vs. NCBI_GenBank
Match: CBI18930.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 118.6 bits (296), Expect = 2.100e-23
Identity = 52/112 (46.43%), Postives = 79/112 (70.54%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSK 152
            +Y+ +   R++ P   NE+R+T QG ++SY+ YAM+L +E+G+  +  K MGRAI+K +T+ E++KR + GLHQ T IGS    + W PLEEGL  +E+TR++S + ITLSK
Sbjct:  260 RYQRVEKPREETPIDENEIRITSQGRMRSYITYAMSLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSK 371
[Close]
BLAST of NO12G02150 vs. NCBI_GenBank
Match: XP_002284740.2 (PREDICTED: uncharacterized protein LOC100254082 [Vitis vinifera] >XP_010664145.1 PREDICTED: uncharacterized protein LOC100254082 [Vitis vinifera] >CAN73522.1 hypothetical protein VITISV_004987 [Vitis vinifera])

HSP 1 Score: 118.6 bits (296), Expect = 2.100e-23
Identity = 52/112 (46.43%), Postives = 79/112 (70.54%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSK 152
            +Y+ +   R++ P   NE+R+T QG ++SY+ YAM+L +E+G+  +  K MGRAI+K +T+ E++KR + GLHQ T IGS    + W PLEEGL  +E+TR++S + ITLSK
Sbjct:    3 RYQRVEKPREETPIDENEIRITSQGRMRSYITYAMSLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSK 114
[Close]
BLAST of NO12G02150 vs. NCBI_GenBank
Match: XP_021611911.1 (ribonuclease P protein subunit p25-like protein [Manihot esculenta] >OAY50533.1 hypothetical protein MANES_05G143700 [Manihot esculenta])

HSP 1 Score: 118.6 bits (296), Expect = 2.100e-23
Identity = 53/112 (47.32%), Postives = 80/112 (71.43%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSK 152
            +Y+ +   + D+P   NE+R+T QG ++SY+ YAM+L +E+G+  +  K MGRAI+K +T+ E++KR + GLHQ T IGS    ++W PLEEGL  +E+TR++S V ITLSK
Sbjct:    3 RYQRVEKAKADSPIDENEIRITSQGRMRSYISYAMSLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQITAIGSTDITDIWEPLEEGLLPLETTRHVSMVTITLSK 114
[Close]
BLAST of NO12G02150 vs. NCBI_GenBank
Match: OWM74949.1 (hypothetical protein CDL15_Pgr021300 [Punica granatum])

HSP 1 Score: 118.6 bits (296), Expect = 2.100e-23
Identity = 52/113 (46.02%), Postives = 81/113 (71.68%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKD 153
            +Y+ +   R++ P   NE+R+T QG ++SY+ YAM+L +E+G+  +  K MGRAI+K +T+ E++KR + GLHQ T IGS+   + W PLEEGL  +E+TR++S + ITLSK+
Sbjct:    3 RYQRVEKPREETPIDENEIRITSQGRMRSYITYAMSLLQEKGSDEIVFKAMGRAINKTVTIVELIKRRIVGLHQITSIGSIDITDTWEPLEEGLVTLETTRHVSMITITLSKN 115
[Close]
BLAST of NO12G02150 vs. NCBI_GenBank
Match: XP_010533935.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 1 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 118.2 bits (295), Expect = 2.800e-23
Identity = 52/113 (46.02%), Postives = 78/113 (69.03%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKD 153
            +Y+ +   + + P   NE+R+T QG  ++Y+ YAM L +E+G+  V  K MGRAI+K +T+ E++KR +PGLHQ T IGS    + W PLEEGL  +E+TR++S + ITLSK+
Sbjct:    3 RYQRVEKPKVETPIDENEIRITSQGRARNYITYAMTLLQEKGSNEVVFKAMGRAINKTVTIVELIKRRIPGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKE 115
The following BLAST results are available for this feature:
BLAST of NO12G02150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024361551.11.200e-2348.65ribonuclease P protein subunit p25-like [Physcomit... [more]
XP_010061099.11.200e-2346.43PREDICTED: ribonuclease P protein subunit p25-like... [more]
XP_018732277.11.200e-2346.43PREDICTED: ribonuclease P protein subunit p25-like... [more]
GAQ88218.11.600e-2347.75hypothetical protein KFL_004100060 [Klebsormidium ... [more]
PSC67986.11.600e-2349.12ribonuclease P subunit p25 [Micractinium conductri... [more]
CBI18930.32.100e-2346.43unnamed protein product, partial [Vitis vinifera][more]
XP_002284740.22.100e-2346.43PREDICTED: uncharacterized protein LOC100254082 [V... [more]
XP_021611911.12.100e-2347.32ribonuclease P protein subunit p25-like protein [M... [more]
OWM74949.12.100e-2346.02hypothetical protein CDL15_Pgr021300 [Punica grana... [more]
XP_010533935.12.800e-2346.02PREDICTED: H/ACA ribonucleoprotein complex subunit... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL126nonsL126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR008ngnoR008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02150.1NO12G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592312gene_5376Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02150.1NO12G02150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02150 ID=NO12G02150|Name=NO12G02150|organism=Nannochloropsis oceanica|type=gene|length=2614bp
CTTTCTTTCTTCTCTTCTCCCCCCTATTTCTTTTCTTCGTTTTCATTTCC
TTGCAACTGCCTGCGTAAGGTTGTTGCCCAAAATAGATAGTGTTTTTTTT
CTATTTTAAATTTCCTTTTTTTTCCGTTCGATTCTCTGTCTCTCACTTCA
TTTTATTTGTTTTTTTAATTCTTGTTCAATCTTGCTTCATCATCTCCATC
TCTTTCTTCACCCTTGGATCTCTCCTTCTACCCCCACTCTATTTCCATTG
CATATGCTCCCTCTACTTGCCTTATTCGCTCCCTCCTCATGTACCGCCAT
CTTCCTCACCGTAACCAGAATCATCAGCAAATACGTGTTGACAACATTTC
CGTAGTGATTCGTGCAGGATTTTCAAGCCTTCCACGCACAATTGTAGCGC
AGTCGCAATATCGCTGGGCGTACTCCCTTTCGGATAGTGTTAAGAGATGG
TGTTAAATGCATGGGTACCCCCGAGCTTGACAGTTTCGGGAGCCGTCTTC
TCATCAAACGTATGCTTCATGGACCGTTGTGATGATTGAACAAAAGAACG
CCTTGCCCGGCATTTTAGGGACCATGAAGTGGCATTCGCTGACATGCGGG
CAAAGCGAGGTACCCAAACTATTTAGAGAAACGTCGTCGATGTCTTATGC
GTTCTGGGTATGGTGCACGCTGTAGATTCGCCTCCCCGAAAAAGTAGTAA
TGAGGCACACGATCTTTCTGTAGTAGCAGTCGGCAGGGAAGAAGTCCCAT
GCGCATCCCCGTAGGTAATGAAGAACCGTTTCCTATTTGTGGATTGGCGA
GATCGTCTCATATGGTGCCCGTCGTAGGAATAGCGGAGGGAAGGATCTCA
CCGACGAGGCCAGCATATTGAATCTATCTTATTCCTACACGCTAACTCAG
CAGTTTCACTCATAAGTTTAGCGGCGGCGATAATGCTGATATACTCGACG
GACGGATCCCGCCCTCGATCGGCTTAAGTAATGGTGGTGGCCCCGTGATT
CCTGCCAAAGGGCTGCTGCGGCACCTTATCGCATCCCAGCCCCTAACCCT
AACCCTATCCGGGCCCTTTGGTTAAAATCATCCATCCGTCGATCGTTAGT
GTGGCAGTTTTTTATGTAATCGAGTACAAAACATGCTCTATACGAGGCAG
AAAGGGAAAAAGAGTATATAGAAGACTCTTCTCGGAGAAAGAGAGGGTGA
ACGTCATACCCCCACACTAGTTGTTCCTATACACCACTTCCTCGATAATC
GCCCCTCCCGAAGGGCCAAATTGAAAGATATATCAATTATCTGTACAAAT
GACTGAGTCATTACTCGAAACATCACAAAGCTGTTTTTAAAAGTTGTGGG
ATAGCTGGAGGGAGGTTGGCGGTTACAGGCCCGTCGGAGCTTTCGAGCTC
ACTCCCCTTACACACGATGCATTGGAAATGTTTCTGAAAGAAACAGGCAG
AAGGAAGGTGTCAATGAGGCACCGTCATGCGTCTAAGTGCAGATATTGTG
CTCATGTGCCAACTACATCAGGCACAACATGGAGTTGCCGTGTGACAAAC
AACAGTTTTCTGTACCCTCCGGTCAGAGCGACAACTTTGGCGCCGCCGGT
GTCCAGGTCTCTATCTCCGCCCCTGCCCCACAACGCTACCGTAGCAAATA
CCGCCTCTTGGCCTGTCATCGGGATGATGCACCTGCCAAGACCAACGAAG
TACGCGTCACCTACCAAGGACCAGTTAAGAGTTACCTGGGCTATGCCATG
GCCCTGTTCGAGGAGCGCGGTGCCCGGGCCGTGGCGCTGAAAGGCATGGG
GAGGGCCATCCACAAGGCCTTGACGGTTGCCGAAATTTTGAAACGCAGCT
TGCCTGGACTCCATCAACGCACTGAAATTGGATCCCTGCCGTTCAAAGAG
GTGTGGGCACCGTTGGAGGAAGGCTTGAATCGCGTCGAGTCGACGCGTTA
CATTTCTTCAGTCCTGATCACGCTATCGAAAGATCCTCCTCCCCTCGACA
TTCGCCATTTTTTCCGAATAATCGTCCAACGTGCGTTAAGACTTGAAGGG
GGCGGATCGGTCAGCCATATGAGAAGCGGCCATAAAGAGGACTCCCCTTG
GTCCCTATGATCCCCCCCCTCTTTTTTTACACACTCACTCTATTTCACAA
CACTTTCGTCCCCTTCTCTTCTCGTTCTCTCCCTTACAACATGACTTTGT
TTTCCTTTCTCTATGCCCACACTGCATCCCTCCCTTTTATCCCTCCCCCT
CTCGCCCCTATCAAAGAGTCGAATTAGGCGATGAAGGAGGTAATTCTACC
ACACCCACATATGGATAATTTAACAAACTTCCTACCGGACAGCGGATATC
CCGAGATTTGGATCGAAGAAAATTGGGACGAAAAGTCAGTCTCGAACCGC
GGCCCAAGGGAGTGTGAATCGAAATTTTGGACCCAAGAAAGTGATGTTGG
GACACAAGTCTCGAATCCCCGCCCAAATGAAAGGGGGAGTGCGTGGCAAT
TCGGGCCGAAGGATATGGCTTCGGGACACAAGTCTTAATTAGCGGCCTAA
AATTAATTAGAAATTACTTGGGAATGCCAAATGCACAACACGGAGGTAAA
AGACATACCAAGTC
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protein sequence of NO12G02150.1

>NO12G02150.1-protein ID=NO12G02150.1-protein|Name=NO12G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MELPCDKQQFSVPSGQSDNFGAAGVQVSISAPAPQRYRSKYRLLACHRDD
APAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTV
AEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLS
KDPPPLDIRHFFRIIVQRALRLEGGGSVSHMRSGHKEDSPWSL*
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Synonyms
Publications