NO12G02030, NO12G02030 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO12G02030 vs. NCBI_GenBank
Match: EWM25798.1 (Zinc finger, RING/FYVE/PHD-type [Nannochloropsis gaditana]) HSP 1 Score: 240.4 bits (612), Expect = 6.900e-60 Identity = 127/253 (50.20%), Postives = 161/253 (63.64%), Query Frame = 0 Query: 32 TRLGSVRAGALNAFFTCSLCEGYLRDPYLLVCCFSRRYCKDCLIRNMRQHDSRCPNAACQAYLGAKLSLLGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPATSQ-------SQALQIRPRDTPLSQDMFILCLP-AEGSGEDGAAVTGEPGAIAQELNVLPGLQLPYLKVQRRMQVLHLRRVLVAALGLATELD-PDEVDVICKGEVLTGQHSLFFIEKIKWAQERPPLTLQYRRK 276 T G+VRAG L F TC+LC GYLRDPYLL CC RRYCKDCLIRN+RQ DSRCPN CQ Y+GAKLS +GRPD QLKD+M+KLLP+V +ER REEAFY + P + Q P S+ Q ++ DTPL QD+ +LCLP G + V + I + LP L+LPYLKVQRR V HL VLVA+L L + +++++C+G+ + G HSL+FIE+ W PLTL Y++K Sbjct: 53 TEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVSRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKIT---SALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKK 302
BLAST of NO12G02030 vs. NCBI_GenBank
Match: XP_005856343.1 (polycomb group ring finger protein 3, partial [Nannochloropsis gaditana CCMP526] >EKU20025.1 polycomb group ring finger protein 3, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 239.6 bits (610), Expect = 1.200e-59 Identity = 128/253 (50.59%), Postives = 161/253 (63.64%), Query Frame = 0 Query: 32 TRLGSVRAGALNAFFTCSLCEGYLRDPYLLVCCFSRRYCKDCLIRNMRQHDSRCPNAACQAYLGAKLSLLGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPST-----VPEQDLPATSQ--SQALQIRPRDTPLSQDMFILCLP-AEGSGEDGAAVTGEPGAIAQELNVLPGLQLPYLKVQRRMQVLHLRRVLVAALGLATELD-PDEVDVICKGEVLTGQHSLFFIEKIKWAQERPPLTLQYRRK 276 T G+VRAG L F TC+LC GYLRDPYLL CC RRYCKDCLIRN+RQ DSRCPN CQ Y+GAKLS +GRPD QLKD+M+KLLP+V +ER REEAFY + P + P PA Q Q ++ DTPL QD+ +LCLP G + V + I + LP L+LPYLKVQRR V HL VLVA+L L + +++++C+G+ + G HSL+FIE+ W PLTL Y++K Sbjct: 48 TEFGTVRAGLLKPFLTCNLCAGYLRDPYLLTCCLFRRYCKDCLIRNLRQRDSRCPNEKCQHYIGAKLSSVGRPDIQLKDLMVKLLPQVLEDERSREEAFYREQGLSCPFSSSVQFFPRVPRPANEQQAKQRVETSVLDTPLDQDLIVLCLPMLTGDCVNEEMVLDKSAKIT---SALPPLELPYLKVQRRTLVSHLCHVLVASLNLEVDSSGAGDIELLCRGKAIPGHHSLYFIERTVWGSNGTPLTLHYQKK 297
BLAST of NO12G02030 vs. NCBI_GenBank
Match: XP_024586853.1 (hypothetical protein L916_05769 [Plasmopara halstedii] >CEG50484.1 hypothetical protein L916_05769 [Plasmopara halstedii]) HSP 1 Score: 100.1 bits (248), Expect = 1.100e-17 Identity = 69/234 (29.49%), Postives = 114/234 (48.72%), Query Frame = 0 Query: 42 LNAFFTCSLCEGYLRDPYLLVCCFSRRYCKDCLIRNMRQHDSRCPNAACQAYLGAKLSLLGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPATSQSQALQIRPRDTPLSQDMFILCL-PAEGSGEDGAAVTGEPGAIAQELNVLPGLQLPYLKVQRRMQVLHLRRVLVAALGLATELDPDEVDVICKGEVLTGQHSLFFIEKIKWAQERPPLTLQYRR 275 +N FF C LC GY RDPY C +C C+ + + C+ LGAK PD +K++ KLLP+ A+E E+ +Y ++ + D P +QS ++ I P +M L P G T P ++ L L+ PY+ Q +++++LR+ L L +A P+E++++CKG V+ ++SL FI + +W +E+ + L+YRR Sbjct: 192 INEFFVCKLCNGYFRDPYTSKECL-HTFCYGCIRGYYLYNPKSNSCSVCKMSLGAKPLAQFLPDPAMKELADKLLPDFHAKEEAEEQMYY----KKFGIKRKQPDTPTETQSGSMTICRSLGPSPGNMISFELYPQRG--------TDIPLFLS-----LSKLEAPYMHTQSLLKIMYLRKYLAKKLKVA---KPEEIEILCKGTVVGPEYSLEFIRRTRWKEEKTNMILEYRR 404
BLAST of NO12G02030 vs. NCBI_GenBank
Match: ETP48235.1 (hypothetical protein, variant 1 [Phytophthora parasitica P10297]) HSP 1 Score: 95.5 bits (236), Expect = 2.800e-16 Identity = 76/270 (28.15%), Postives = 119/270 (44.07%), Query Frame = 0 Query: 20 SELPTVTASISSTRLGSVRAGALNAFFTCSLCEGYLRDPYLLVCCFSRRYCKDCLIRNMRQH--DSRCPNAACQAYLGAKLSLLGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPATSQSQALQIRPRDTPLSQDMFILCL-PAEGSGEDGAAVTGEPGAIAQELNV-----------LPGLQLPYLKVQRRMQVLHLRRVLVAALGLATELDPDEVDVICKGEVLTGQHSLFFIEKIKWAQERPPLTLQYRRK 276 S L R ++R +N FF C LC+GY RDPY C +C C+ H S CP C LGAK PD +K++ KLLP+ +E E +Y ++ + D P+ +Q +I P +M L P G E G + L + L L PY+ Q +++++LR+ L L +A P+E++++CKG V+ ++SL FI + +W +E + L+YRR+ Sbjct: 14 SSLDDAACLFVEARTETLRMANINEFFICKLCKGYFRDPYTSKECL-HTFCYGCIRGYYLYHPKSSSCP--TCNVNLGAKPLAKILPDPAMKELATKLLPDYTVKEEAEERTYY----KKFGIKRKQSDTPSDTQPSPPKIHRSLGPSPGNMIRFELYPQRGFVTIYYQTISEFGILKLSLVLCCSPDVPLFLSLDKLDAPYMYTQSLLKIMYLRKYLAKKLKVA---KPEEIEILCKGTVVGPEYSLEFIRRTRW-KESSKMVLEYRRQ 272
BLAST of NO12G02030 vs. NCBI_GenBank
Match: ETL43813.1 (hypothetical protein L916_05769 [Phytophthora parasitica] >ETL96977.1 hypothetical protein L917_05661 [Phytophthora parasitica] >ETP48192.1 hypothetical protein, variant [Phytophthora parasitica P10297] >ETP48236.1 hypothetical protein, variant 2 [Phytophthora parasitica P10297] >KUG00532.1 Polycomb group RING finger protein 3 [Phytophthora nicotianae]) HSP 1 Score: 94.7 bits (234), Expect = 4.700e-16 Identity = 73/258 (28.29%), Postives = 115/258 (44.57%), Query Frame = 0 Query: 20 SELPTVTASISSTRLGSVRAGALNAFFTCSLCEGYLRDPYLLVCCFSRRYCKDCLIRNMRQH--DSRCPNAACQAYLGAKLSLLGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPATSQSQALQIRPRDTPLSQDMFILCLPAEGSGEDGAAVTGEPGAIAQELNVLPGLQLPYLKVQRRMQVLHLRRVLVAALGLATELDPDEVDVICKGEVLTGQHSLFFIEKIKWAQERPPLTLQYRRK 276 S L R ++R +N FF C LC+GY RDPY C +C C+ H S CP C LGAK PD +K++ KLLP+ +E E +Y ++ + D P+ +Q +I P +M L + G D L L PY+ Q +++++LR+ L L +A P+E++++CKG V+ ++SL FI + +W +E + L+YRR+ Sbjct: 14 SSLDDAACLFVEARTETLRMANINEFFICKLCKGYFRDPYTSKECL-HTFCYGCIRGYYLYHPKSSSCP--TCNVNLGAKPLAKILPDPAMKELATKLLPDYTVKEEAEERTYY----KKFGIKRKQSDTPSDTQPSPPKIHRSLGPSPGNMIRFELYPQ-RGPDVPLFLS-----------LDKLDAPYMYTQSLLKIMYLRKYLAKKLKVA---KPEEIEILCKGTVVGPEYSLEFIRRTRW-KESSKMVLEYRRQ 248
BLAST of NO12G02030 vs. NCBI_GenBank
Match: XP_009519707.1 (hypothetical protein PHYSODRAFT_478652 [Phytophthora sojae] >EGZ24419.1 hypothetical protein PHYSODRAFT_478652 [Phytophthora sojae]) HSP 1 Score: 94.0 bits (232), Expect = 8.000e-16 Identity = 75/262 (28.63%), Postives = 124/262 (47.33%), Query Frame = 0 Query: 16 IPPNSELPTVTASISSTRLGSVRAGALNAFFTCSLCEGYLRDPYLLVCCFSRRYCKDCLIRNMRQHDS--RCPNAACQAYLGAKLSLLGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPATSQSQALQIRPRDTPLSQDMFILCLPAEGSGEDGAAVTGEPGAIAQELNVLPGLQLPYLKVQRRMQVLHLRRVLVAALGLATELDPDEVDVICKGEVLTGQHSLFFIEKIKWAQERPPLTLQYRRK 276 + P+ + + + R ++R +N F C LC+GYLRDPY + C +C C IR +DS C C LGAK PD +K++ KLLP+ A+E + E FY ++ D PAT + ++ P +M +P E + G AV + +LN L P + Q + +++ LR+ L L + P+E++++CKG + ++SL FI + +W +E + L+YRR+ Sbjct: 8 LAPSLDDSSCNVMFAEARTETLRMADINEFLICKLCKGYLRDPYTVKECL-HTFCHGC-IRGFYLYDSTKSCSCPTCHVRLGAKPWAHIIPDPAMKELTEKLLPDYRAKEEEEESVFY----AKLGIKRKRVDAPATPRRSRMKTSGPRGPSPGNM----IPFEIYPQRGPAV-----PLFLQLN---KLHAPCMNTQAQFKIISLRKYLSKKL---KGVKPEEIEILCKGVAVGPEYSLEFIRRTRW-KENSKMILEYRRQ 247
BLAST of NO12G02030 vs. NCBI_GenBank
Match: XP_001748213.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ86974.1 predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 93.2 bits (230), Expect = 1.400e-15 Identity = 64/235 (27.23%), Postives = 116/235 (49.36%), Query Frame = 0 Query: 42 LNAFFTCSLCEGYLRDPYLLVCCFSRRYCKDCLIRNMRQHDSRCPNAACQAYLGAKLSLLGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPATSQSQALQIRPRDTPLSQDMFILCLPAEGSGEDGAAVTGEPGAIAQELNVLPGLQLPYLKVQRRMQVLHLRRVLVAALGLATELDPDEVDVICKGEVLTGQHSLFFIEKIKWAQERPPLTLQYRRKA 277 +N + C +C GY+ + + C +C+ C++++ R+ CP QA+ A L L R D L+ ++ KLLP+V ER+ AFY + P P AT+ + P+ + + + A+ S +D + G + +L LP P+++ + +LHL++ L L L +PD+V+++C GEVL ++SL ++ + +W LTLQ+R ++ Sbjct: 163 VNQYIVCQICMGYIVNATTISECL-HSFCRSCIVKHFRK-SKICPVCNQQAHETAPLDTL-RQDRTLQSIINKLLPDVAEAEREARRAFYGIEDE--PDAKPGSTTTATTNGEP---TPKRQKMDDLIDFVMQKADWSDQDAE----DLGDVVSKLTELP---KPFIRTSAAVTILHLKKFLAKKLALE---EPDDVEILCNGEVLGREYSLEYVARTRWRDTAQLLTLQFRPRS 379
BLAST of NO12G02030 vs. NCBI_GenBank
Match: ETO79266.1 (hypothetical protein, variant [Phytophthora parasitica P1976]) HSP 1 Score: 92.4 bits (228), Expect = 2.300e-15 Identity = 75/270 (27.78%), Postives = 118/270 (43.70%), Query Frame = 0 Query: 20 SELPTVTASISSTRLGSVRAGALNAFFTCSLCEGYLRDPYLLVCCFSRRYCKDCLIRNMRQH--DSRCPNAACQAYLGAKLSLLGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPATSQSQALQIRPRDTPLSQDMFILCL-PAEGSGEDGAAVTGEPGAIAQELNV-----------LPGLQLPYLKVQRRMQVLHLRRVLVAALGLATELDPDEVDVICKGEVLTGQHSLFFIEKIKWAQERPPLTLQYRRK 276 S L R ++R +N FF C LC+GY RDPY C +C C+ H S CP C LGAK PD +K++ KLLP+ +E E +Y ++ + D P+ +Q +I P +M L P E G + L + L L PY+ Q +++++LR+ L L +A P+E++++CKG V+ ++SL FI + +W +E + L+YRR+ Sbjct: 14 SSLDDAACLFVEARTETLRMANINEFFICKLCKGYFRDPYTSKECL-HTFCYGCIRGYYLYHPKSSSCP--TCNVNLGAKPLAKILPDPAMKELATKLLPDYTVKEEAEERTYY----KKFGIKRKQSDTPSDTQPSPPKIHRSLGPSPGNMIRFELYPQREFVTIYYQTISEFGILKLSLVLCCSPDVPLFLSLDKLDAPYMYTQSLLKIMYLRKYLAKKLKVA---KPEEIEILCKGTVVGPEYSLEFIRRTRW-KESSKMVLEYRRQ 272
BLAST of NO12G02030 vs. NCBI_GenBank
Match: ETI50518.1 (hypothetical protein F443_05962 [Phytophthora parasitica P1569] >ETK90398.1 hypothetical protein L915_05837 [Phytophthora parasitica] >ETM50127.1 hypothetical protein L914_05786 [Phytophthora parasitica] >ETP20294.1 hypothetical protein F441_05964 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 91.7 bits (226), Expect = 4.000e-15 Identity = 72/258 (27.91%), Postives = 114/258 (44.19%), Query Frame = 0 Query: 20 SELPTVTASISSTRLGSVRAGALNAFFTCSLCEGYLRDPYLLVCCFSRRYCKDCLIRNMRQH--DSRCPNAACQAYLGAKLSLLGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPATSQSQALQIRPRDTPLSQDMFILCLPAEGSGEDGAAVTGEPGAIAQELNVLPGLQLPYLKVQRRMQVLHLRRVLVAALGLATELDPDEVDVICKGEVLTGQHSLFFIEKIKWAQERPPLTLQYRRK 276 S L R ++R +N FF C LC+GY RDPY C +C C+ H S CP C LGAK PD +K++ KLLP+ +E E +Y ++ + D P+ +Q +I P +M L + G D L L Y+ Q +++++LR+ L L +A P+E++++CKG V+ ++SL FI + +W +E + L+YRR+ Sbjct: 14 SSLDDAACLFVEARTETLRMANINEFFICKLCKGYFRDPYTSKECL-HTFCYGCIRGYYLYHPKSSSCP--TCNVNLGAKPLAKILPDPAMKELATKLLPDYTVKEEAEERTYY----KKFGIKRKQSDTPSDTQPSPPKIHRSLGPSPGNMIRFELYPQ-RGPDVPLFLS-----------LDKLDASYMYTQSLLKIMYLRKYLAKKLKVA---KPEEIEILCKGTVVGPEYSLEFIRRTRW-KESSKMVLEYRRQ 248
BLAST of NO12G02030 vs. NCBI_GenBank
Match: XP_002902001.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY57391.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 91.3 bits (225), Expect = 5.200e-15 Identity = 72/258 (27.91%), Postives = 115/258 (44.57%), Query Frame = 0 Query: 20 SELPTVTASISSTRLGSVRAGALNAFFTCSLCEGYLRDPYLLVCCFSRRYCKDCLIRNMRQHD--SRCPNAACQAYLGAKLSLLGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPATSQSQALQIRPRDTPLSQDMFILCLPAEGSGEDGAAVTGEPGAIAQELNVLPGLQLPYLKVQRRMQVLHLRRVLVAALGLATELDPDEVDVICKGEVLTGQHSLFFIEKIKWAQERPPLTLQYRRK 276 S L R ++R +N FF C LC+GY RDPY C +C C+ H S CP C+ LGAK PD +K++ K LP+ A+E E +Y+ + D A+ + + P +P + F L P G G+ L+ ++ Q ++++HLR+ L L +A P+E++++CKG V+ ++SL FI + +W QE + L+YRR+ Sbjct: 14 SSLDDAACLFVEARTETLRMANINEFFICKLCKGYFRDPYTSKECL-HTFCYGCIRGYYLYHPKISSCP--TCKLNLGAKPMAKLLPDPAMKELASKFLPDYTAKEDAEERLYYMKFGIKRKQPDTRSDTQASPPKISRSLGP--SPGNMIRFEL-YPQRGPDVPLFLALGK-------------LEAAHMYTQPLLKIMHLRKYLAKKLKVA---KPEEIEILCKGTVVGSEYSLEFIRRTRW-QESSKMLLEYRRQ 248 The following BLAST results are available for this feature:
BLAST of NO12G02030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02030 ID=NO12G02030|Name=NO12G02030|organism=Nannochloropsis oceanica|type=gene|length=837bpback to top protein sequence of NO12G02030.1 >NO12G02030.1-protein ID=NO12G02030.1-protein|Name=NO12G02030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bpback to top Synonyms
Publications
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