NO12G02000, NO12G02000 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02000 vs. NCBI_GenBank
Match: EWM25828.1 (Rieske [2Fe-2S] iron-sulfur domain protein [Nannochloropsis gaditana]) HSP 1 Score: 401.4 bits (1030), Expect = 2.100e-108 Identity = 201/234 (85.90%), Postives = 211/234 (90.17%), Query Frame = 0 Query: 12 MLTSLVRTTSSRAAATALPATTWTQRG-VAAARNLASSSSTSAGPVDKMESFDNYYEKDKLHKQPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGVTVKWRGKPIFIRHRTPAEIDRENAVNMNELRDAEADTVRAQRPEWLIIVGICTHLGCVPIANAGEYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLADTKVLIG 245 M + V + S+AAA ATTW RG +AA R+ A S TSAGPVDKMESFDNYYEKDKLHK+PGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQG+TVKWRGKPIFIRHRTPAEIDRE AVNMNELRDAE D RAQ+PEWLIIVGICTHLGCVPIANAG+YHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFL +TKVLIG Sbjct: 1 MFSKFVSSGVSQAAART-SATTWVHRGSMAAVRHHA--SQTSAGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
BLAST of NO12G02000 vs. NCBI_GenBank
Match: XP_002998081.1 (cytochrome b-c1 complex subunit Rieske, putative [Phytophthora infestans T30-4] >EEY70427.1 cytochrome b-c1 complex subunit Rieske, putative [Phytophthora infestans T30-4]) HSP 1 Score: 284.3 bits (726), Expect = 3.700e-73 Identity = 130/194 (67.01%), Postives = 157/194 (80.93%), Query Frame = 0 Query: 51 TSAGPVDKMESFDNYYEKDKLHKQPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGVTVKWRGKPIFIRHRTPAEIDRENAVNMNELRDAEADTVRAQRPEWLIIVGICTHLGCVPIANAGEYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLADTKVLIG 245 +S VD ES D+Y+EKD++ GDP+KR FTYF+LGGAR YA+AARL +KFV +MSASADVLALA AEFD+ +I G VTVKWRGKPIFI+HRT EID N V++ LRD E D VR Q+PEWL+++G+CTHLGCVP ++AGEY GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPYKF+ D K+L+G Sbjct: 24 SSKAVVDTYESPDHYFEKDRI--DAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEGSTVTVKWRGKPIFIKHRTTKEIDISNQVDVGNLRDPETDAVRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYKFIEDNKILLG 215
BLAST of NO12G02000 vs. NCBI_GenBank
Match: XP_008889910.1 (ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica INRA-310] >ETI57318.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica P1569] >ETK97092.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >ETL50440.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >ETM03477.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >ETM56743.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica] >ETN23757.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica INRA-310] >ETO86062.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica P1976] >ETP27107.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica CJ01A1] >ETP55057.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit [Phytophthora parasitica P10297] >KUF87169.1 Cytochrome b-c1 complex subunit Rieske-3 [Phytophthora nicotianae]) HSP 1 Score: 283.5 bits (724), Expect = 6.300e-73 Identity = 130/194 (67.01%), Postives = 157/194 (80.93%), Query Frame = 0 Query: 51 TSAGPVDKMESFDNYYEKDKLHKQPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGVTVKWRGKPIFIRHRTPAEIDRENAVNMNELRDAEADTVRAQRPEWLIIVGICTHLGCVPIANAGEYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLADTKVLIG 245 +S VD ES D+Y+EKD++ GDP+KR FTYF+LGGAR YA+AARL +KFV +MSASADVLALA AEFD+ I G VTVKWRGKPIFI+HRT EID N V+++ LRD E D VR Q+PEWL+++G+CTHLGCVP ++AGEY GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPYKF+ D K+L+G Sbjct: 24 SSKALVDTYESPDHYFEKDRI--DAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSSINEGSTVTVKWRGKPIFIKHRTAKEIDISNQVDVSNLRDPETDAVRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYKFIEDDKILLG 215
BLAST of NO12G02000 vs. NCBI_GenBank
Match: POM78138.1 (Cytochrome b-c1 complex subunit Rieske [Phytophthora palmivora var. palmivora]) HSP 1 Score: 282.7 bits (722), Expect = 1.100e-72 Identity = 129/197 (65.48%), Postives = 159/197 (80.71%), Query Frame = 0 Query: 48 SSSTSAGPVDKMESFDNYYEKDKLHKQPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGVTVKWRGKPIFIRHRTPAEIDRENAVNMNELRDAEADTVRAQRPEWLIIVGICTHLGCVPIANAGEYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLADTKVLIG 245 ++ +S VD ES D+Y+EKD++ GDP+KR FTYF+LGGAR YA+AARL +KFV +MSASADVLALA AEFD+ +I G VTVKWRGKPIFI+HRT EID N V++ LRD E D VR Q+PEWL+++G+CTHLGCVP ++AGEY GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPYKF+ + K+L+G Sbjct: 22 AAMSSKAVVDTYESADHYFEKDRI--DAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEGATVTVKWRGKPIFIKHRTAKEIDISNQVDVGNLRDPETDAVRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYKFIEENKILLG 216
BLAST of NO12G02000 vs. NCBI_GenBank
Match: XP_024578025.1 (ubiquinol-cytochrome c iron-sulfur subunit [Plasmopara halstedii] >CEG41656.1 ubiquinol-cytochrome c iron-sulfur subunit [Plasmopara halstedii]) HSP 1 Score: 279.3 bits (713), Expect = 1.200e-71 Identity = 127/189 (67.20%), Postives = 154/189 (81.48%), Query Frame = 0 Query: 56 VDKMESFDNYYEKDKLHKQPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGVTVKWRGKPIFIRHRTPAEIDRENAVNMNELRDAEADTVRAQRPEWLIIVGICTHLGCVPIANAGEYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLADTKVLIG 245 VD ES DNY+EKD++ GDP+KR FTYF+LGGAR YA+AARL +KFV +MSASADVLALA AEFD+ I G VTVKWRGKPIFI+HRT EI+ N V+++ LRD E D R Q+PEWL+++G+CTHLGCVP ++AGEY GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPY+FL + K+L+G Sbjct: 30 VDTYESPDNYFEKDRI--DAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSSISEGSTVTVKWRGKPIFIKHRTAREIEISNQVDVSNLRDPETDADRVQKPEWLVVLGVCTHLGCVPTSDAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYQFLDENKILLG 216
BLAST of NO12G02000 vs. NCBI_GenBank
Match: CCA16957.1 (cytochrome bc1 complex subunit Rieske putative [Albugo laibachii Nc14]) HSP 1 Score: 278.5 bits (711), Expect = 2.000e-71 Identity = 127/195 (65.13%), Postives = 157/195 (80.51%), Query Frame = 0 Query: 50 STSAGPVDKMESFDNYYEKDKLHKQPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGVTVKWRGKPIFIRHRTPAEIDRENAVNMNELRDAEADTVRAQRPEWLIIVGICTHLGCVPIANAGEYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLADTKVLIG 245 ST + VD M + D+Y+E D++ GDP++R FTYFVLGGAR +YA+AARL +KFV +MSASADVLALA AEFD+ I G VTVKWRGKPIFI+HRT EI+ N V ++ LRD E D VR + P+WL+++G+CTHLGCVPI+NAG+Y GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPY+FL D K+L+G Sbjct: 28 STKSEVVDDMSTPDHYFETDRI--SSGDPSRRAFTYFVLGGARIMYATAARLAVIKFVGSMSASADVLALATAEFDLSSIDEGATVTVKWRGKPIFIKHRTDQEIESANDVPVSSLRDPETDDVRVKDPKWLVVLGVCTHLGCVPISNAGDYKGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYQFLEDNKILLG 220
BLAST of NO12G02000 vs. NCBI_GenBank
Match: GAY03718.1 (cytochrome b-c1 complex subunit Rieske, putative [Pythium insidiosum]) HSP 1 Score: 278.1 bits (710), Expect = 2.600e-71 Identity = 129/203 (63.55%), Postives = 160/203 (78.82%), Query Frame = 0 Query: 42 ARNLASSSSTSAGPVDKMESFDNYYEKDKLHKQPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGVTVKWRGKPIFIRHRTPAEIDRENAVNMNELRDAEADTVRAQRPEWLIIVGICTHLGCVPIANAGEYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLADTKVLIG 245 AR A++ ST + VD S D+Y+EKD++ GDP+KR FTYF+LGGAR YA+AARL +KFV +MSASADVLALA AEFD+ +I G VTVKWRGKPIFI+HR+ EI N VN++ LRD E D R + P+WL+++G+CTHLGCVP +NAGEY GWFCPCHGSHYD+SGRIRKGPAPLN+EIPPY+F+ D K+L+G Sbjct: 20 ARAPAAAFSTKSAVVDDFSSPDHYFEKDRI--ASGDPSKRAFTYFMLGGARVAYATAARLAVIKFVGSMSASADVLALATAEFDLSNIDEGATVTVKWRGKPIFIKHRSEKEIALSNDVNLSNLRDPETDAERVKDPKWLVVLGVCTHLGCVPTSNAGEYGGWFCPCHGSHYDLSGRIRKGPAPLNLEIPPYQFIEDNKILLG 220
BLAST of NO12G02000 vs. NCBI_GenBank
Match: CCI50725.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 276.9 bits (707), Expect = 5.900e-71 Identity = 125/186 (67.20%), Postives = 152/186 (81.72%), Query Frame = 0 Query: 59 MESFDNYYEKDKLHKQPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGVTVKWRGKPIFIRHRTPAEIDRENAVNMNELRDAEADTVRAQRPEWLIIVGICTHLGCVPIANAGEYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLADTKVLIG 245 M + D+Y+E D++ GDP +R FTYFVLGGAR +YA+AARL +KFV +MSASADVLALA AEFD+ I G VTVKWRGKPIFI+HRT EI+ N V+++ LRD E D VR + P+WL+++G+CTHLGCVPI+NAGEY GWFCPCHGSHYDVSGRIRKGPAPLN+EIPPY+FL D K+L+G Sbjct: 1 MSTPDHYFETDRI--SSGDPTRRAFTYFVLGGARIMYATAARLAVIKFVGSMSASADVLALATAEFDLSSIDEGATVTVKWRGKPIFIKHRTDQEIEAANEVSVSSLRDPETDDVRVKDPKWLVVLGVCTHLGCVPISNAGEYKGWFCPCHGSHYDVSGRIRKGPAPLNLEIPPYQFLEDNKILLG 184
BLAST of NO12G02000 vs. NCBI_GenBank
Match: XP_008607508.1 (ubiquinol-cytochrome c reductase iron-sulfur subunit [Saprolegnia diclina VS20] >EQC39447.1 ubiquinol-cytochrome c reductase iron-sulfur subunit [Saprolegnia diclina VS20]) HSP 1 Score: 276.2 bits (705), Expect = 1.000e-70 Identity = 134/208 (64.42%), Postives = 158/208 (75.96%), Query Frame = 0 Query: 37 RGVAAARNLASSSSTSAGPVDKMESFDNYYEKDKLHKQPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGVTVKWRGKPIFIRHRTPAEIDRENAVNMNELRDAEADTVRAQRPEWLIIVGICTHLGCVPIANAGEYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLADTKVLIG 245 RG+ A N + S SA P + S ++Y D++ Q GDP+KR FTYF++GGAR YA+AARL LKFV TMSASADVLAL+ AEFD+ I G +TVKWRGKPIFI+HRT AEID N +M ELR E D R Q P+WL+I+GICTHLGCVP +NAGEY GWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKF++ +VL+G Sbjct: 11 RGLVAPLN---ARSFSAAPSKEDFSSPDHYFDDEVKAQVGDPSKRAFTYFMMGGARVAYATAARLAVLKFVGTMSASADVLALSTAEFDLSSIEEGSTITVKWRGKPIFIKHRTDAEIDESNNTSMAELRHKETDAERVQDPKWLVILGICTHLGCVPASNAGEYGGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFVSAERVLLG 215
BLAST of NO12G02000 vs. NCBI_GenBank
Match: OQR92742.1 (cytochrome b-c1 complex subunit Rieske [Achlya hypogyna]) HSP 1 Score: 275.0 bits (702), Expect = 2.200e-70 Identity = 135/213 (63.38%), Postives = 159/213 (74.65%), Query Frame = 0 Query: 32 TTWTQRGVAAARNLASSSSTSAGPVDKMESFDNYYEKDKLHKQPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLGQGVTVKWRGKPIFIRHRTPAEIDRENAVNMNELRDAEADTVRAQRPEWLIIVGICTHLGCVPIANAGEYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLADTKVLIG 245 T+ RGVA S+ S SA P + S ++Y D++ Q GDP+KR FTYF++GGAR YA+AARL LKFV TMSASADVLAL+ AEFD+ I G +TVKWRGKPIFI+HRT AEI+ N N+ ELR E D R Q P+WL+I+GICTHLGCVP +NAGEY GWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKF+ +VL+G Sbjct: 7 TSKAVRGVAP----LSARSFSAAPSKENFSSPDHYFDDEVKAQIGDPSKRAFTYFMMGGARVAYATAARLAVLKFVGTMSASADVLALSTAEFDLSSIEEGATITVKWRGKPIFIKHRTDAEIEESNNTNLAELRHQETDAERVQDPKWLVILGICTHLGCVPASNAGEYGGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFVGPQRVLLG 215 The following BLAST results are available for this feature:
BLAST of NO12G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02000 ID=NO12G02000|Name=NO12G02000|organism=Nannochloropsis oceanica|type=gene|length=986bpback to top protein sequence of NO12G02000.1 >NO12G02000.1-protein ID=NO12G02000.1-protein|Name=NO12G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bpback to top Synonyms
Publications
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