NO12G01980, NO12G01980 (gene) Nannochloropsis oceanica

Overview
NameNO12G01980
Unique NameNO12G01980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length927
Alignment locationchr12:560303..561229 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:560303..561229 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G01980 vs. NCBI_GenBank
Match: EWM25796.1 (hypothetical protein Naga_100021g50 [Nannochloropsis gaditana])

HSP 1 Score: 352.4 bits (903), Expect = 1.400e-93
Identity = 184/235 (78.30%), Postives = 199/235 (84.68%), Query Frame = 0 
Query:   59 PRRMASTGGKGTQRLGGVGFDKERTLGFVEYLSTDALESIDTFDRLSVGLNMTIENFFTFINRLLEEEVPRD----XXXXXXXXXXXXXXTLSVKQLGQLFGGVNDTAVEYILDNLDADIYDLQAGFNTVDVIMVLMFVSSHLEANRLPLSILEIISAFCDPEWEDLDADVWVPNVAKLKGVKEADVQRVMNQLEGSLEDIRGYVDEIVRMDCCELVLNGGFPTVVSASSAKASP 290
            PRRMAST G+G   LGGVGFDKERTLGFVEYLST+ALESIDTFDRLSVGLNMTIENFFTFINRLLEEEVP +                  TL+VKQLGQLFGGVNDTAVEYIL+NL ADIYDLQAGFNTVDVIMVLMFVSSHLEAN++PLSILEIISAFCDPEWEDLDADVWV NVAK KGV E  VQ VM+QLEGSLEDIR YV+EIVRMD CEL+LN  FP++VSA+S  ++P
Sbjct:   68 PRRMAST-GRGMPTLGGVGFDKERTLGFVEYLSTEALESIDTFDRLSVGLNMTIENFFTFINRLLEEEVPENDNEAEDRDSEDSVWGDEETLTVKQLGQLFGGVNDTAVEYILENLGADIYDLQAGFNTVDVIMVLMFVSSHLEANQIPLSILEIISAFCDPEWEDLDADVWVRNVAKAKGVNEKKVQHVMDQLEGSLEDIRSYVEEIVRMDTCELLLNARFPSIVSAASKSSNP 301
The following BLAST results are available for this feature:
BLAST of NO12G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25796.11.400e-9378.30hypothetical protein Naga_100021g50 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL126nonsL126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR008ngnoR008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010155NSK010155Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01980.1NO12G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592246gene_5356Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g50gene4708Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01980.1NO12G01980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01980 ID=NO12G01980|Name=NO12G01980|organism=Nannochloropsis oceanica|type=gene|length=927bp
ATGGTCATGCGGAGAGTAGCACAACCACAGACGGTGGGACTCCAATTATT
CCTCCTCCTCGTGCTGATGATGCTCCACGCGGCGATTGCAGACACGGCCC
CCATCTTCAGCATGACCAGCACCAGCGGCGGTCCCGCGGCGGCCACCACA
TCGGGGGGTGGCGGGAACGGCATTCCCCGGCGCATGGCAAGCACGGGGGG
AAAGGGCACGCAAAGATTGGGCGGCGTGGGCTTTGACAAGGAGCGGACGC
TGGGGTTTGTAGAGTACTTGAGCACGGACGCCTTGGAAAGCATCGACACG
TTTGATCGGCTCTCCGTGGGCTTGAACATGACCATTGAGAACTTTTTTAC
ATTCATCAACCGGCTGCTGGAAGAAGAGGTCCCAAGGGACGAGGACGAGG
ACGAGGACGAGGACGGGTCAGGCGACGAGGATACGTTGAGCGTGAAGCAG
CTGGGCCAATTGTTTGGGGGAGTAAACGACACGGCGGTGGAATATATTCT
GGACAATCTAGACGCGGACATTTACGACTTGCAGGCAGGCTTTAACACGG
TGGACGTGATCATGGTGCTGATGTTCGTATCTTCCCATCTGGAGGCTAAT
CGTTTGCCTCTCTCCATTCTCGAGATCATCTCCGCCTTCTGCGACCCTGA
ATGGGAAGACCTGGACGCGGATGTGTGGGTGCCGAATGTGGCCAAGCTTA
AGGGTGTGAAGGAGGCGGACGTTCAGCGGGTCATGAATCAGCTGGAGGGC
TCCTTGGAGGACATCAGGGGGTATGTGGACGAGATAGTGCGGATGGACTG
TTGCGAGCTTGTTCTCAACGGTGGCTTTCCTACTGTCGTCTCGGCGTCCT
CTGCTAAGGCCAGTCCTCGACTTACTAGTCCCCGGCTTACCTCATCTGTT
TCTATCGACAAGCGCAGTGGGTATTAA
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protein sequence of NO12G01980.1

>NO12G01980.1-protein ID=NO12G01980.1-protein|Name=NO12G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MVMRRVAQPQTVGLQLFLLLVLMMLHAAIADTAPIFSMTSTSGGPAAATT
SGGGGNGIPRRMASTGGKGTQRLGGVGFDKERTLGFVEYLSTDALESIDT
FDRLSVGLNMTIENFFTFINRLLEEEVPRDEDEDEDEDGSGDEDTLSVKQ
LGQLFGGVNDTAVEYILDNLDADIYDLQAGFNTVDVIMVLMFVSSHLEAN
RLPLSILEIISAFCDPEWEDLDADVWVPNVAKLKGVKEADVQRVMNQLEG
SLEDIRGYVDEIVRMDCCELVLNGGFPTVVSASSAKASPRLTSPRLTSSV
SIDKRSGY*
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Synonyms
Publications