NO12G01930, NO12G01930 (gene) Nannochloropsis oceanica

Overview
NameNO12G01930
Unique NameNO12G01930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length950
Alignment locationchr12:550027..550976 -

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Properties
Property NameValue
DescriptionRrna (Guanine-n-)-methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:550027..550976 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014810Fcf2
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO12G01930 vs. NCBI_GenBank
Match: EWM25797.1 (deoxynucleotidyltransferase terminal-interacting protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 267.3 bits (682), Expect = 5.100e-68
Identity = 145/232 (62.50%), Postives = 178/232 (76.72%), Query Frame = 0
Query:   42 IEEGESEDDD---IIRLDSVPPSSLTGPPMAPKQRQLMQDASRMGNVRFETGLPIPSYFRFEKVGKAQQTSLDPNAKVMTAQMLSALKHKAGTAAPKPRQALINSAAGCYSK--KGNTSGARVTQGVYERDKEREQDAKMLLMRNYIDPKRFYKGLESLAPDFQIGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEANKSGRKGQYKARQLKNKPK 269
            I + ESE+D    +I LD+ P  +L      P+QR+L+Q ASR+GN+RFETGLP PSYF+FEK+GK Q+  + PNAK + A   S+L+ KA TAA  PR+  +NS A  + K   G  +G + TQGVYERDKEREQDAKMLLMRNY+DPKRFYKGLE LAPDFQ+GTVIEGR+D ++ R+PRR RKRTFVDEILADRGVR Y+KKKF +IQE  K+GRKG Y+ARQ K+KPK
Sbjct:  114 IHDDESEEDSGNGMILLDATPSHAL-----LPQQRRLVQGASRLGNMRFETGLPTPSYFQFEKLGKTQKAMVVPNAKQVAASKQSSLQLKADTAAHMPRK--VNSGAVLHRKGAGGGITGMKTTQGVYERDKEREQDAKMLLMRNYMDPKRFYKGLEGLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPK 338          
BLAST of NO12G01930 vs. NCBI_GenBank
Match: XP_005856119.1 (rrna (guanine-n -)-methyltransferase [Nannochloropsis gaditana CCMP526] >EKU20255.1 rrna (guanine-n -)-methyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 265.8 bits (678), Expect = 1.500e-67
Identity = 144/232 (62.07%), Postives = 178/232 (76.72%), Query Frame = 0
Query:   42 IEEGESEDDD---IIRLDSVPPSSLTGPPMAPKQRQLMQDASRMGNVRFETGLPIPSYFRFEKVGKAQQTSLDPNAKVMTAQMLSALKHKAGTAAPKPRQALINSAAGCYSK--KGNTSGARVTQGVYERDKEREQDAKMLLMRNYIDPKRFYKGLESLAPDFQIGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEANKSGRKGQYKARQLKNKPK 269
            I + ESE+D    +I LD+ P  +L      P+QR+L+Q ASR+GN+RFETGLP PSYF+FEK+GK Q+  + PNAK + A   S+L+ KA TAA  PR+  +NS A  + K   G  +G + TQGVYERDKER+QDAKMLLMRNY+DPKRFYKGLE LAPDFQ+GTVIEGR+D ++ R+PRR RKRTFVDEILADRGVR Y+KKKF +IQE  K+GRKG Y+ARQ K+KPK
Sbjct:  828 IHDDESEEDSGNGMILLDATPSHAL-----LPQQRRLVQGASRLGNMRFETGLPTPSYFQFEKLGKTQKAMVVPNAKQVAASKQSSLQLKADTAAHMPRK--VNSGAVLHRKGAGGGITGMKTTQGVYERDKERKQDAKMLLMRNYMDPKRFYKGLEGLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPK 1052          
BLAST of NO12G01930 vs. NCBI_GenBank
Match: XP_022786472.1 (deoxynucleotidyltransferase terminal-interacting protein 2-like [Stylophora pistillata] >PFX28149.1 Deoxynucleotidyltransferase terminal-interacting protein 2 [Stylophora pistillata])

HSP 1 Score: 95.9 bits (237), Expect = 2.000e-16
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 0
Query:  169 EREQDAKMLLMRNYIDPKRFYKGLES--LAPDFQIGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEANKSGRKGQYKARQLKNKP 268
            E E+D K++ MRN +D KR YK  +S  L   FQIGTV+EG  D  + R+P+RQRK   +DE+LAD   R Y KKK+  IQ A +SG+KG YK ++ K KP
Sbjct:  197 EIERDMKLMKMRNVLDKKRHYKKNDSSALPKYFQIGTVVEGSADFYSSRIPKRQRKTNMIDELLADAEFRRYNKKKYLEIQAAKQSGKKGFYKKKKNKRKP 297          
BLAST of NO12G01930 vs. NCBI_GenBank
Match: XP_004345151.2 (hypothetical protein CAOG_06402 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 92.0 bits (227), Expect = 2.900e-15
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 0
Query:  169 EREQDAKMLLMRNYIDPKRFYKGLES--LAPDFQIGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEANKSGRKGQYKARQLKNKP 268
            E E+D ++L MRNY+DPK+ +KG +S  L   FQI  V+EG  +  + RL R++RK T VDE++AD  +R Y K+KF  I++ N  GR+G  K  Q K KP
Sbjct:  142 EVERDLRLLRMRNYLDPKKHFKGSDSKALPKHFQIARVVEGPTEFYSSRLTRKERKNTLVDELMADDRLRKYHKRKFVEIEQRNAQGRRGHVKRLQQKRKP 242          
BLAST of NO12G01930 vs. NCBI_GenBank
Match: KJE96029.1 (hypothetical protein, variant [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 92.0 bits (227), Expect = 2.900e-15
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 0
Query:  169 EREQDAKMLLMRNYIDPKRFYKGLES--LAPDFQIGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEANKSGRKGQYKARQLKNKP 268
            E E+D ++L MRNY+DPK+ +KG +S  L   FQI  V+EG  +  + RL R++RK T VDE++AD  +R Y K+KF  I++ N  GR+G  K  Q K KP
Sbjct:   49 EVERDLRLLRMRNYLDPKKHFKGSDSKALPKHFQIARVVEGPTEFYSSRLTRKERKNTLVDELMADDRLRKYHKRKFVEIEQRNAQGRRGHVKRLQQKRKP 149          
BLAST of NO12G01930 vs. NCBI_GenBank
Match: KJE96028.1 (hypothetical protein CAOG_006402 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 92.0 bits (227), Expect = 2.900e-15
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 0
Query:  169 EREQDAKMLLMRNYIDPKRFYKGLES--LAPDFQIGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEANKSGRKGQYKARQLKNKP 268
            E E+D ++L MRNY+DPK+ +KG +S  L   FQI  V+EG  +  + RL R++RK T VDE++AD  +R Y K+KF  I++ N  GR+G  K  Q K KP
Sbjct:  102 EVERDLRLLRMRNYLDPKKHFKGSDSKALPKHFQIARVVEGPTEFYSSRLTRKERKNTLVDELMADDRLRKYHKRKFVEIEQRNAQGRRGHVKRLQQKRKP 202          
BLAST of NO12G01930 vs. NCBI_GenBank
Match: XP_020912527.1 (rRNA-processing protein fcf2-like isoform X1 [Exaiptasia pallida] >KXJ23595.1 rRNA-processing protein fcf2 [Exaiptasia pallida])

HSP 1 Score: 92.0 bits (227), Expect = 2.900e-15
Identity = 51/105 (48.57%), Postives = 66/105 (62.86%), Query Frame = 0
Query:  165 ERDKEREQDAKMLLMRNYIDPKRFYKGLES--LAPDFQIGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEANKSGRKGQYKARQLKNKP 268
            E   E EQD K+L +RN +D KR YK  +S  L   FQ+GTV+EG  D  + RL +R RK T VDE+LAD   R Y KKK+  IQ + +SG+KG YK +  + KP
Sbjct:  173 EMTPEIEQDLKILKLRNVLDRKRHYKKNDSKTLPKYFQVGTVVEGAADFYSSRLSKRDRKSTIVDELLADTEFRRYNKKKYLEIQSSKQSGKKGFYKKKMNRRKP 277          
BLAST of NO12G01930 vs. NCBI_GenBank
Match: XP_001626745.1 (predicted protein [Nematostella vectensis] >EDO34645.1 predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 92.0 bits (227), Expect = 2.900e-15
Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 0
Query:  169 EREQDAKMLLMRNYIDPKRFYKGLES--LAPDFQIGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEANKSGRKGQYKARQLKNKP 268
            E +Q+ K+L MR+ +DPKR YK  +S  L   FQ+GTV+EG  D  + R+P+R RK   V E+LAD   R Y KKKF  IQ A +SGRKG YK +  + KP
Sbjct:   19 ELKQELKVLKMRHILDPKRHYKKNDSKELPKYFQMGTVVEGAADFYSSRIPKRSRKNNIVQELLADAQFRRYNKKKFLEIQAAKESGRKGFYKKKTNRRKP 119          
BLAST of NO12G01930 vs. NCBI_GenBank
Match: NP_594087.3 (putative rRNA processing protein Fcf2 [Schizosaccharomyces pombe] >O42877.1 RecName: Full=rRNA-processing protein fcf2 >CAA15924.1 rRNA processing protein Fcf2 (predicted) [Schizosaccharomyces pombe])

HSP 1 Score: 91.7 bits (226), Expect = 3.800e-15
Identity = 72/229 (31.44%), Postives = 111/229 (48.47%), Query Frame = 0
Query:   53 IRLDSVPPSSLTGPPMAPKQRQLMQDASRMGNVRFETGLP--------IPSYFRFEKVGKAQQTSLDPNAKVMTAQMLSALKHKAGTAAPKPRQALINSAAGCYSKKGN---TSGAR-VTQGVYERDKEREQDAKMLLMRNYIDPKRFYK--GLESLAPDFQIGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEANKSGRKGQYKARQLKNKP 268
            + +D    S L     +  Q +   D  + G  +  T +P        +PSYF  + V   ++  L  N++        +  + A      P      SA G   KK N   T+G+        E  +  ++D ++L MRN +DPKR Y+    +S+   FQ+G+++EG  D  + R+P R+RK T VDE+L D   RSY KKK+  +Q++  SGRKGQYK  Q + KP
Sbjct:    6 LSVDLATISKLLESAKSTLQEKQASDDDKHGQQKLLTKIPKIISSSFELPSYFEKKFVMGLKKDELVENSE--------SYINDASFEPTVPIYESHVSAPGISKKKKNIKDTAGSNWFDMPATELTESVKRDIQLLKMRNALDPKRHYRRENTKSMPKYFQVGSIVEGPQDFYSSRIPTRERKETIVDELLHDSERRSYFKKKYLELQKSKMSGRKGQYKKLQQRRKP 226          
BLAST of NO12G01930 vs. NCBI_GenBank
Match: XP_020625135.1 (deoxynucleotidyltransferase terminal-interacting protein 2-like [Orbicella faveolata])

HSP 1 Score: 89.7 bits (221), Expect = 1.500e-14
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:  169 EREQDAKMLLMRNYIDPKRFYKGLES--LAPDFQIGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEANKSGRKGQYKARQLKNK 267
            E EQD K++ MRN +D KR YK  +S  L   FQIGTV+EG  D    R+P+RQRK   +DE+L+D   R Y KKK+  IQ A +SG+KG +K +  K K
Sbjct:  189 EIEQDMKVIKMRNILDRKRHYKKNDSSALPKYFQIGTVVEGSADFYTSRIPKRQRKSNLIDELLSDAEFRRYNKKKYLEIQAAKQSGKKGFHKKKTNKRK 288          
The following BLAST results are available for this feature:
BLAST of NO12G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25797.15.100e-6862.50deoxynucleotidyltransferase terminal-interacting p... [more]
XP_005856119.11.500e-6762.07rrna (guanine-n -)-methyltransferase [Nannochlorop... [more]
XP_022786472.12.000e-1650.50deoxynucleotidyltransferase terminal-interacting p... [more]
XP_004345151.22.900e-1546.53hypothetical protein CAOG_06402 [Capsaspora owczar... [more]
KJE96029.12.900e-1546.53hypothetical protein, variant [Capsaspora owczarza... [more]
KJE96028.12.900e-1546.53hypothetical protein CAOG_006402 [Capsaspora owcza... [more]
XP_020912527.12.900e-1548.57rRNA-processing protein fcf2-like isoform X1 [Exai... [more]
XP_001626745.12.900e-1549.50predicted protein [Nematostella vectensis] >EDO346... [more]
NP_594087.33.800e-1531.44putative rRNA processing protein Fcf2 [Schizosacch... [more]
XP_020625135.11.500e-1449.00deoxynucleotidyltransferase terminal-interacting p... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010118NSK010118Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01930.1NO12G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592230gene_5350Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g10gene4674Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01930.1NO12G01930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01930 ID=NO12G01930|Name=NO12G01930|organism=Nannochloropsis oceanica|type=gene|length=950bp
AGACAGCCTTCAGAATGGTGGGCACGGGACGCAAGGCGGCGGCCTCCTCG
ACAAGTCGGCAGCAGCAGGAAAAGgtgcgtgatgatgaagatatcatcga
ctggctggccgagacaccctctcaaccctcggctttttacacacacacca
acacactccagGCAAACAAGGCCTCTTCAGAAAAACAACAGAGCGGGGAG
AAAATGGCACCACACGCTGAGGGAATTGAGGAAGGAGAATCGGAAGACGA
CGACATTATCCGCCTGGATTCGGTGCCTCCATCTAGCCTCACAGGCCCCC
CCATGGCACCCAAACAACGCCAGCTCATGCAAGATGCTTCACGAATGGGC
AATGTGCGCTTTGAGACCGGGCTGCCTATCCCGTCCTATTTCCGTTTCGA
AAAGGTTGGCAAGGCGCAACAGACTTCTCTGGACCCAAATGCAAAAGTGA
TGACGGCCCAAATGCTATCAGCCCTCAAACACAAGGCCGGCACCGCCGCA
CCAAAGCCACGACAAGCACTTATCAACAGTGCCGCTGGCTGCTACAGCAA
GAAGGGCAATACATCAGGGGCACGAGTCACACAGGGAGTATACGAGCGGG
ACAAGGAACGGGAGCAAGATGCCAAGATGCTCTTGATGCGAAATTATATT
GATCCGAAGCGTTTCTACAAAGGCTTGGAAAGTCTGGCACCTGACTTTCA
GATTGGTACTGTCATTGAGGGGCGTCTGGATTCTGTCAATGGGCGATTGC
CCAGGCGCCAACGGAAGCGGACATTTGTGGATGAGATTTTGGCGGATCGC
GGGGTGAGATCATATACGAAAAAAAAGTTTGCGTCGATTCAAGAGGCAAA
TAAGTCAGGACGGAAAGGCCAATACAAAGCCCGGCAGCTAAAAAACAAAC
CCAAGTAGGCGGGCTAGGAGACTGGAAAGAAGAAATAAAGTGTGCATACA
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protein sequence of NO12G01930.1

>NO12G01930.1-protein ID=NO12G01930.1-protein|Name=NO12G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MVGTGRKAAASSTSRQQQEKANKASSEKQQSGEKMAPHAEGIEEGESEDD
DIIRLDSVPPSSLTGPPMAPKQRQLMQDASRMGNVRFETGLPIPSYFRFE
KVGKAQQTSLDPNAKVMTAQMLSALKHKAGTAAPKPRQALINSAAGCYSK
KGNTSGARVTQGVYERDKEREQDAKMLLMRNYIDPKRFYKGLESLAPDFQ
IGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEAN
KSGRKGQYKARQLKNKPK*
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Synonyms
Publications