NO12G01920, NO12G01920 (gene) Nannochloropsis oceanica

Overview
NameNO12G01920
Unique NameNO12G01920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1834
Alignment locationchr12:548113..549946 +

Link to JBrowse

Properties
Property NameValue
DescriptionSeryl-trna synthetase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:548113..549946 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO:0006434seryl-tRNA aminoacylation
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
GO:0004828serine-tRNA ligase activity
GO:0000166nucleotide binding
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR010978tRNA-bd_arm
IPR006195aa-tRNA-synth_II
IPR002314aa-tRNA-synt_IIb_cons-dom
IPR015866Ser-tRNA-synth_1_N
IPR002317Ser-tRNA-ligase_type_1
Homology
BLAST of NO12G01920 vs. NCBI_GenBank
Match: XP_005856106.1 (seryl-tRNA synthetase [Nannochloropsis gaditana CCMP526] >EKU20242.1 seryl-tRNA synthetase [Nannochloropsis gaditana CCMP526] >EWM25831.1 seryl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 767.7 bits (1981), Expect = 2.400e-218
Identity = 397/524 (75.76%), Postives = 443/524 (84.54%), Query Frame = 0
Query:    8 KISTCLKTTMLLLVLVTPSARAFHV---ASLG--RRPLSDSSARYFSRHRFGRQH--RQEGVSMMAERPSSAGKGLDVRLVTDEPDLVMAHLKARHASEEQMSSVDDVGSLNRRRKELVKEQQGALAQRKMLSAEIGKLMKEKKNEEATKLKSQVEYASSVAATAEEQLLDLEQEMELLMYQIPNLLDDRVPEGKDEEANVVVTEWGTDKRKIGEGFLWHDDIASKVGGYDPSAAAKLSGARFSVLSGPVARLERAIIQFFLDRHTDRNGYREVSVPYIVSRSTLTGTGQLPKFENDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLPYRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGLRFRPAPMASATEEGKKGKKSTVLCHTINGSGLAVGRTLVAILENYQHEDGSVSIPEVLVPYMGGMARLEPVVKK 525
            ++S       ++L+L   S RAFH     S G  + PL   SA   S  + GR+       V M + RPSS GK LDV+LVT+EPDLV+AHL+AR AS+EQ SSV D+  L  RRKELVKEQQGAL QRK LSAEIGKLM+EK++ EA KLK+QVEYA+SVA+TAEEQL  LE+EM+ LM Q+PNLLDDRVP+G DE  N VV EWG ++RK+GE +LWHDDIA+K+GGYDP+AAA+LSGARFS+LSGP+ARLERAI+QFFLD+HT  NGYREVSVPYIVSRSTLTGTGQLPKFE DLFAVNHQVNGEDAFLIPTAEVPITNLHRDEIL+A+QLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQS AEHEALT+ AEECL+LL LPYRKVRLCSGDIGFAA HCYDLEVWLPAQQTYREIASCSNC DFQARRM LR+RPAP+ +A E G KGKKSTVLCHTINGSGLAVGRTLVAILENYQ EDGSV +PEVLVPYMGG  +LEPV KK
Sbjct:   10 RLSLTFVLATIMLLLAIRSLRAFHAKPQTSFGKIKNPLCRVSAPSSSYEQRGRRDVGLHGAVRMASGRPSSGGKTLDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEIGKLMREKQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWGVERRKVGERYLWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAPLGAAKEAG-KGKKSTVLCHTINGSGLAVGRTLVAILENYQEEDGSVRLPEVLVPYMGGTTKLEPVAKK 532          
BLAST of NO12G01920 vs. NCBI_GenBank
Match: CBN73852.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 535.8 bits (1379), Expect = 1.500e-148
Identity = 279/512 (54.49%), Postives = 356/512 (69.53%), Query Frame = 0
Query:   22 LVTPSARAFHVASL-----------GRRPLSDSSARYFSRHRFGRQHRQEGVSMMAERPSSAGKGLDVRLVTDEPDLVMAHLKARHASEEQMSSVDDVGSLNRRRKELVKEQQGALAQRKMLSAEIGKLMKEKKNEEATKLKSQVEYASSVAATAEEQLLDLEQEMELLMYQIPNLLDDRVPEGKDEEANVVVTEWGTDKRKIGEGFLWHDDIASKVGGYDPSAAAKLSGARFSVLSGPVARLERAIIQFFLDRHTDRNGYREVSVPYIVSRSTLTGTGQLPKFENDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLPYRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGLRFRPAPMASATEEGKKGKKSTVLCHTINGSGLAVGRTLVAILENYQHE-DGSVSIPEVLVPYMGGMARLEPV 522
            ++TP AR   VA+            G R     + ++ + H   +  +         R ++    LD  L++  PDLV+ H+KAR   E+ + +V  +G L   R+EL+  ++ AL QR  +SA+IGKLMK  + +EA + K++V+  + +A +AEE L +++ E+  L+ ++PNLLD RVP+G  EE NVVV EWG +  K GE +LWHD++A K+GG+DP  AA++SGARFSVL GP+ARLERA+ Q+ LD HT  +GY EVS+P +V+RS+L GTGQLPKFE DLF  NH V  ED+FLIPT EVP+TNL R ++LD +QLP+S V LTPCFRAEAGS GRDT+GLLRQHQF KVELVK TTPE S  EHEALTQHAE  LK L LP+R+V LCSGDIGF A  CYDLEVW+P Q  +REI+SCSNC DFQARRM LR+R       T E KK K   + CHTINGSG+AVGR LVA+LENY +  DGSVSIP+VL PYMGG  +LE V
Sbjct:    1 MITPCARVMAVATFATTRCGSFLYGGARFARTGAKQFAALHSSAQVEQTTKDHESLSRSNADDASLDSVLISTNPDLVVDHMKARRMGEDSVEAVHRIGDLMDNRRELIMTKEDALKQRNAMSAQIGKLMKAGQAKEAEEKKNEVQSINKIAGSAEEDLNEVDSELNTLLMRLPNLLDSRVPDGDGEEENVVVAEWGQEYIKNGEEYLWHDEVAIKLGGWDPEGAARISGARFSVLKGPLARLERALGQWLLDVHTTEHGYTEVSLPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPMSLVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKFTTPEDSRNEHEALTQHAEAVLKALKLPFRRVSLCSGDIGFGARLCYDLEVWMPGQGAFREISSCSNCQDFQARRMNLRYR-----EPTPEAKKKKSRNLPCHTINGSGVAVGRALVAVLENYYNPIDGSVSIPDVLRPYMGGAEKLESV 507          
BLAST of NO12G01920 vs. NCBI_GenBank
Match: XP_009037100.1 (hypothetical protein AURANDRAFT_26104 [Aureococcus anophagefferens] >EGB08382.1 hypothetical protein AURANDRAFT_26104 [Aureococcus anophagefferens])

HSP 1 Score: 516.9 bits (1330), Expect = 7.300e-143
Identity = 267/462 (57.79%), Postives = 332/462 (71.86%), Query Frame = 0
Query:   65 MAERPSSAGKGLDVRLVTDEPDLVMAHLKARHASEEQMSSVDDVGSLNRRRKELVKEQQGALAQRKMLSAEIGKLMKEKKNE-EATKLKSQVEYASSVAATAEEQLLDLEQEMELLMYQIPNLLDDRVPEGKDEEANVVVTEWGTDKRKIGE--GFLWHDDIASKVGGYDPSAAAKLSGARFSVLSGPVARLERAIIQFFLDRHTDRNGYREVSVPYIVSRSTLTGTGQLPKFENDLFAV-NHQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLPYRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGLRFRPAPMASATEEGK--KGKKSTVLCHTINGSGLAVGRTLVAILENYQHEDGSVSIPEVLVPYMGGMARLEP 521
            ++ RPS+AG  L++R + D  D V AH++AR  SEE ++SVD + +L  +R    +E+  AL+ RK LS +IGK MK    E +   LK++V  ++ VA  AE  +  LE+E   L   +PNLLDD  P+G  E  NVVV EWGTD RK+G+   +LWHDD+A+ +GG+D  AA+K+SGARF+VL G VARLERA+  FFLD HTD  GY EVS P IV+RS L GTGQLPKFE+DLF + NH+V GEDAFLIPTAEVP+TNL   +IL+ S LP+    LT CFRAEAGSYGRDT+GL+RQHQF KVELVKI  P+   AEHEAL   AE+CL++L LPYRKV LC+GDIGF+A  CYDLEVWLP  Q YREI+SCS  GD+QARRMGLRFRP P     + GK   GK   +  +T+NGSGLAVGR LVA+LEN+Q+ DGSV++P  L PYMGG   + P
Sbjct:   30 VSTRPSAAGVSLELRTLKDHADTVKAHVRARQGSEETVASVDRMVALTEQRAAAQRERDAALSTRKALSGDIGKAMKTGAAEADVAALKAEVAASADVAEGAEATMAALEEEANALFAALPNLLDDATPDGAGETENVVVAEWGTDSRKLGDEGDYLWHDDLAAGLGGFDAEAASKVSGARFAVLRGGVARLERALGAFFLDMHTDGGGYEEVSSPVIVARSALEGTGQLPKFEDDLFKLDNHKVRGEDAFLIPTAEVPLTNLVAGDILEESDLPIRVAALTHCFRAEAGSYGRDTRGLVRQHQFAKVELVKIVAPDDGVAEHEALVADAEKCLQMLDLPYRKVSLCAGDIGFSARRCYDLEVWLPGPQEYREISSCSLMGDYQARRMGLRFRPKPAKDDNDGGKXXXGKPKPLFPYTMNGSGLAVGRALVAVLENHQNPDGSVTVPRALRPYMGGAESIIP 491          
BLAST of NO12G01920 vs. NCBI_GenBank
Match: EJK56765.1 (hypothetical protein THAOC_23274 [Thalassiosira oceanica])

HSP 1 Score: 512.7 bits (1319), Expect = 1.400e-141
Identity = 263/472 (55.72%), Postives = 333/472 (70.55%), Query Frame = 0
Query:   70 SSAGKGLDVRLVTDEPDLVMAHLKARHASEEQMSSVDDVGSLNRRRKELVKEQQGALAQRKMLSAEIGKLMKEKKNEEATKLKSQVEYASSV---AATAEEQLLDLEQEMELLMYQIPNLLDDRVPEGKDEEANVVVTEWGTDKRKIGEGF--------LWHDDIASKVGGYDPSAAAKLSGARFSVLSGPVARLERAIIQFFLDRHTDRNGYREVSVPYIVSRSTLTGTGQLPKFENDLFAV---NHQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLPYRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGLRFRPAPMASATEEGKKGKK------STVLCHTINGSGLAVGRTLVAILENYQHEDGSVSIPEVLVPYMGGMARLEPV 522
            SS    LD R +++  D+V++HLK+R AS E + S   + SLN  R  L+K++  AL +R   S ++GKLM+E K +E  ++K     AS     A+  EE+L ++E  +  L+  +PNLLDD VP+G D+ AN +V+EWG D   + E F        LWHDD+A+ +GG+   AA  +SGARF  L+GPVARLERAI  +FLDR +++ GY EVS P +VSRS L GT QLPKFE DLF +   +H  NGEDAFLIPTAEVP+TN+H  +IL+ S LP+SY  LTPCFRAEAGSYGRDT+GL+R HQF+KVE+VKITTPE S  EH  LT+HAEECL+ L +PYRK+RLCSGD+GF+A HCYDLE WLP+ + +REI+SCSN GDFQARRM LR+RP       +  K GKK        V CHTINGSGLAVGRTLVA+LENYQ  DG V +PEVL PYMGG+A L+ +
Sbjct:   67 SSVPNSLDARSLSENLDVVISHLKSRRASNEAIESAKSIASLNFDRVALIKKRDDALQKRNEYSGQVGKLMRESKGQETDEIKGIKNLASQAGGDASKVEEELSEIESNVNSLLASLPNLLDDVVPDGDDDSANELVSEWG-DVNALPEEFGWPSDFEPLWHDDVATNLGGWSSEAAVGMSGARFVSLTGPVARLERAISSYFLDRASEK-GYTEVSPPLVVSRSALEGTSQLPKFEEDLFKIIPESHTCNGEDAFLIPTAEVPLTNMHTGQILEESDLPISYCALTPCFRAEAGSYGRDTRGLIRTHQFYKVEMVKITTPETSDDEHHKLTRHAEECLEELRIPYRKMRLCSGDVGFSAQHCYDLEAWLPSTKEFREISSCSNTGDFQARRMALRYRPEVQVDDNQTNKSGKKKKAKKPKPVFCHTINGSGLAVGRTLVAVLENYQTPDGDVVVPEVLRPYMGGVAILKRI 536          
BLAST of NO12G01920 vs. NCBI_GenBank
Match: KOO31716.1 (seryl-tRNA synthetase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 509.6 bits (1311), Expect = 1.200e-140
Identity = 262/457 (57.33%), Postives = 322/457 (70.46%), Query Frame = 0
Query:   65 MAERPSSAGKGLDVRLVTDEPDLVMAHLKARHASEEQMSSVDDVGSLNRRRKELVKEQQGALAQRKMLSAEIGKLMKEKKNEEATKLKSQVEYASSVAATAEEQLLDLEQEMELLMYQIPNLLDDRVPEGKDEEANVVVTEWGTDKRKIGEGFLWHDDIASKVGGYDPSAAAKLSGARFSVLSGPVARLERAIIQFFLDRHTDRNGYREVSVPYIVSRSTLTGTGQLPKFENDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLPYRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGLRFRPAPMASATEEGKKGK-KSTVLCHTINGSGLAVGRTLVAILENYQHEDGSVSIPEVLVPYMGGMARLEP 521
            M    +S+   LD RL+ DEP+L+   L+ R A E  + +VD +G L + R   V E   A   RK LS +IG L+K  +  EA KLK++V  +++ A  A+ +L   + E   L  ++PNLLD+RV +G D+ AN+ V  W  D  + G+  LWHD+  +++GG D   AAKLSGARFSVL G VARLERA+I FFLD HT ++GY E+ VPYIV    L GTGQLPKFE DLF ++  +NG   +LIPTAEVPITNLH  EIL+  QLPLSY   TPCFRAEAGS+GRDT+GL+RQHQFHKVELVK+TTPE S AEH  L  HAE CL+ L LPYRK++LCSGDIGF+A  CYDLEVWLP Q  +REI+SCSNCGDFQARRM LR+RP      +E    GK K    CHTINGSGLAVGRTLVA+LENYQ++DGS++IPEVL PYMGG   + P
Sbjct:   34 MQAATASSSPTLDERLIADEPELIKKTLRMRRADESMLQAVDRIGELTKLRAAAVAEGNDAREVRKKLSPKIGALVKNGETVEAEKLKAEVAQSATEADAADAKLEVFDAERTSLFNKLPNLLDERVVDGADDNANIEVFRWRCDDLRTGK--LWHDEFGTQLGGIDMDGAAKLSGARFSVLKGGVARLERALINFFLDFHTGQHGYTELCVPYIVGGEALYGTGQLPKFEEDLFKLSAPINGRTGYLIPTAEVPITNLHAGEILEEVQLPLSYCAFTPCFRAEAGSHGRDTRGLVRQHQFHKVELVKLTTPEASDAEHHKLVGHAEACLQALELPYRKMQLCSGDIGFSAKLCYDLEVWLPGQGKFREISSCSNCGDFQARRMNLRYRP------SERDANGKQKKPRFCHTINGSGLAVGRTLVALLENYQNDDGSLTIPEVLRPYMGGQTTILP 482          
BLAST of NO12G01920 vs. NCBI_GenBank
Match: CEL98192.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 492.3 bits (1266), Expect = 1.900e-135
Identity = 255/465 (54.84%), Postives = 325/465 (69.89%), Query Frame = 0
Query:   69 PSSAGKGLDVRLVTDEPDLVMAHLKARHASEEQ--MSSVDDVGSLNRRRKELVKEQQGALAQRKMLSAEIGKLMKEKKNEEATKLKSQVEYASSVAATAEEQLLDLEQEMELLMYQIPNLLDDRVPEGKDEEANVVVTEWGTD-----KRKIGEG-FLWHDDIASKVGGYDPSAAAKLSGARFSVLSGPVARLERAIIQFFLDRHTDRNGYREVSVPYIVSRSTLTGTGQLPKFENDLFAVN--HQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLPYRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGLRFRPAPMASATEEGKKGKKSTVLCHTINGSGLAVGRTLVAILENYQHEDGS-----VSIPEVLVPYMGGMARL 519
            P      +D+RLV  +PD V   L+ R  S++   M SVD++G+L+  R  L+ E   A ++R  LS EIG L ++ K +EA  +K+QVE A+  AA A+ +L  ++ E++ ++  +PN LD+ VPEG DE  N VVTEW  D      + +G+G ++WHD+IA+++G +    AA+LSG+RF+V SG +AR+ERA+ Q  +D HT  +GY E  VPY+VS   L GTGQLPKF  DLF ++  H +NG+  +LIPTAEVP+TN+HR+ ILD S LP SYV LTPCFRAEAGSYG+DTKGL RQH FHKVELVKI TP+ S  +HEA+T+HAE  L+LLGLPYRKVRLC GDIGF+A HCYDLEVWLP+QQ YREI+S SNC DFQARRM LR+RP     A E GKK K    LCHTINGSG+AVGR L+A+LEN+Q  D S     V IPE L  YM G   L
Sbjct:   20 PEGGFLSVDLRLVALQPDTVRELLRRRGESDDSDAMQSVDEIGALSVDRSRLISEGDAARSERNTLSQEIGSLYRQGKADEAESIKAQVESATERAAAADAELSRVDAEIQTMLLSLPNALDELVPEGADESDNEVVTEWTPDDPRVKDKMVGDGEYMWHDEIAARLGCWKADQAAQLSGSRFAVYSGGIARMERALGQLMMDVHTQEHGYEEHVVPYLVSEECLVGTGQLPKFTEDLFTLDERHSLNGQRGYLIPTAEVPLTNVHRESILDESDLPKSYVALTPCFRAEAGSYGKDTKGLFRQHVFHKVELVKICTPDTSRQQHEAMTRHAEHILRLLGLPYRKVRLCGGDIGFSAAHCYDLEVWLPSQQRYREISSISNCWDFQARRMALRYRP----KAPEGGKKKKTKPTLCHTINGSGVAVGRCLIAVLENFQRIDESTGKLVVDIPEALQVYMKGKVSL 480          
BLAST of NO12G01920 vs. NCBI_GenBank
Match: GAX20495.1 (seryl-tRNA synthetase [Fistulifera solaris])

HSP 1 Score: 487.6 bits (1254), Expect = 4.700e-134
Identity = 264/463 (57.02%), Postives = 317/463 (68.47%), Query Frame = 0
Query:   68 RPSSAGKGLDVRLVTDEPDLVMAHLKARHASEEQMSSVDDVGSLNRRRKELVKEQQGALAQRKMLSAEIGKLM-KEKKNEEATKLKSQVEYASSVAATAEEQLLDLEQEMELLMYQ----IPNLLDDRVPEGKDEEANVVVTEWG---TDKRKIG--EGF--LWHDDIASKVGGYDPSAAAKLSGARFSVLSGPVARLERAIIQFFLDRHTDRNGYREVSVPYIVSRSTLTGTGQLPKFENDLFAV---NHQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLPYRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGLRFRPAPMASATEEGKKGKKSTV-LCHTINGSGLAVGRTLVAILENYQHEDGSVSIPEVLVPYMGG 515
            R S     L+++ +T+E D V++HLKAR AS E + +  D+ +L  +R  L++E+   L QRK  SA +G LM K + +EE  K                                    IPNLLDD+VP+G ++  N VV+ WG      R++G  E F  LWHDD+AS + GY   AA ++SGARF  LSG VA+LERA+  FF+D HT ++GY EVSVPY+V RS L GT QLPKF+ DLFA+   +H  NGEDAFLIPTAEVP+TN+HR+E+L+ S LPLSYV  TPCFRAEAGSYGRDTKGL+R HQF KVELVKIT+ + S  EHE LT  AE CL+ L LPYRKVRLCSGDIGFAA HCYDLEVWL   + YREI+SCSN GDFQARRM LR+RP   A A  +GKK KK  + LCHTINGSGLAVGRTLVAILENYQ  DGSV +PEVL PYMGG
Sbjct:   42 RVSRKDLSLELKTITNELDTVLSHLKARRASAETLQAAQDIAALASKRSNLIQERDSFLNQRKEASATVGMLMRKNELSEEEQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIPNLLDDKVPDGDNDSNNEVVSTWGDIDALPRELGWTEEFEPLWHDDVASGLKGYKSEAAVRISGARFVALSGAVAQLERALAMFFVDLHTTKHGYTEVSVPYVVGRSALEGTSQLPKFQEDLFAITPESHTCNGEDAFLIPTAEVPVTNMHREEVLEESDLPLSYVSFTPCFRAEAGSYGRDTKGLIRTHQFLKVELVKITSADTSDEEHELLTSQAEACLQALKLPYRKVRLCSGDIGFAARHCYDLEVWLAGAKEYREISSCSNTGDFQARRMSLRYRPKSEAGA--DGKKPKKEKLKLCHTINGSGLAVGRTLVAILENYQKPDGSVVVPEVLRPYMGG 502          
BLAST of NO12G01920 vs. NCBI_GenBank
Match: XP_005780726.1 (serine-tRNA ligase [Emiliania huxleyi CCMP1516] >EOD28297.1 serine-tRNA ligase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 480.3 bits (1235), Expect = 7.500e-132
Identity = 257/473 (54.33%), Postives = 320/473 (67.65%), Query Frame = 0
Query:   65 MAERPSSAGKGLDVRLVTDEPDLVMAHLKARHASEEQMSSVDDVGSLNRRRKELVKEQQGALAQRKMLSAEIGKLMKEKKNEEATKLKSQVEYASSVAATAEEQLLDLEQEMELLMYQIPNLLDDRVPEGKDEEANVVVTEWGTD-KRKIGEGFLWHDDIASKVGGYD------PSAAAKLSGARFSVLSGPVARLERAIIQFFLDRHTD---------------RNGYREVSVPYIVSRSTLTGTGQLPKFENDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLPYRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGLRFRPAPMASATEEGKKGKKSTVLCHTINGSGLAVGRTLVAILENYQHEDGSVSIPEVLVPYMGGM 516
            MA   S+A   LD RLV DEP +V++ L+ R ASEE +++VD +G L R+R  LV+E   A A+RK LS +IG L+K      A  LK  V  AS VA  A+ ++ ++E E   L   +PNLLD R P+G DEEANV+++EW  D   ++ +G  WHD++A+ +GG D        AAAKLSG+RF+VL G VAR+ERA+   FLD HT                 +GY E SVP +V    L GTGQLPKF+ DL + +  +   +    P  +VP+TNLH  EILD + LP+SYVG TPCFRAEAGS GRDT+GL RQHQF KVELVKI TPEQS A+H+AL +HAE CL+ L LPYRKV LC+GDIGF+A  CYDLEVWLP Q  YREI+SCSNCG FQARRMGLR+RPAP      +G   K+    CHT+NGSGLAVGR LVA+LENYQ+ DGSV++PE L PYMGG+
Sbjct:    1 MAVVESAATVTLDERLVADEPSVVVSSLQRRRASEEVIAAVDRIGELTRQRAALVEEGNAARAERKALSPKIGTLLKAGDEAGAAALKEDVAKASEVAGAADAKVEEVEAERGRLFATLPNLLDSRTPDGADEEANVILSEWAPDGYGELRDGLTWHDELATALGGLDLEAAPPAQAAAKLSGSRFAVLRGGVARMERALASLFLDLHTGERDNHHHPPGTCETREHGYVETSVPLLVGAEALQGTGQLPKFQEDLASTS--LPFPEPSGSPPPQVPLTNLHAGEILDEAALPISYVGATPCFRAEAGSAGRDTRGLFRQHQFLKVELVKICTPEQSDAQHQALVEHAERCLRALQLPYRKVLLCAGDIGFSARLCYDLEVWLPGQGRYREISSCSNCGSFQARRMGLRYRPAP------DGSGKKRKPEFCHTLNGSGLAVGRALVAVLENYQNADGSVTVPEALRPYMGGL 465          
BLAST of NO12G01920 vs. NCBI_GenBank
Match: GAX13511.1 (seryl-tRNA synthetase [Fistulifera solaris])

HSP 1 Score: 479.2 bits (1232), Expect = 1.700e-131
Identity = 254/403 (63.03%), Postives = 301/403 (74.69%), Query Frame = 0
Query:  128 QRKMLSAEIGKLMKEKK--NEEATKLKSQVE---YASSVAATAEEQLLDLEQEMELLMYQIPNLLDDRVPEGKDEEANVVVTEWGTDK---RKIG--EGF--LWHDDIASKVGGYDPSAAAKLSGARFSVLSGPVARLERAIIQFFLDRHTDRNGYREVSVPYIVSRSTLTGTGQLPKFENDLFAV---NHQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLPYRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGLRFRPAPMASATEEGKKGKKSTV-LCHTINGSGLAVGRTLVAILENYQHEDGSVSIPEVLVPYMGG 515
            QRK  SA +G LM++K+   EE  +L+   E    AS  A  AE QL +L+ +M+ L+  IPNLLDD+VP+G ++  N VV+ WG      +++G  E F  LWHDD+AS + GY   AA ++SGARF  LSG VA+LERA+  FF+D HT ++GY EVSVPY+V RS L GT QLPKF+ DLFA+   +H  NGEDAFLIPTAEVP+TN+HR+E+L+ S LPLSYV  TPCFRAEAGSYGRDTKGL+R HQF KVELVKIT+ + S  EHE LT HAE CL+ L LPYRKVRLCSGDIGFAA HCYDLEVWL   + YREI+SCSN GDFQARRM LR+R  P + A  EGKK KK  + LCHTINGSGLAVGRTLVAILENYQ  DGSV +PEVL PYMGG
Sbjct:   93 QRKEASATVGSLMRKKELSEEEQKQLEEAKENSTKASDGATAAETQLEELQAKMDGLLSGIPNLLDDKVPDGDNDSNNEVVSTWGDINALPKELGWREDFEPLWHDDVASGLKGYKSEAAVRISGARFVALSGAVAQLERALAMFFVDLHTTKHGYTEVSVPYVVGRSALEGTSQLPKFQEDLFAITPESHTCNGEDAFLIPTAEVPVTNMHREEVLEESDLPLSYVSFTPCFRAEAGSYGRDTKGLIRTHQFLKVELVKITSADTSDEEHELLTSHAEACLQALKLPYRKVRLCSGDIGFAARHCYDLEVWLAGAKEYREISSCSNTGDFQARRMSLRYR--PKSEAGVEGKKPKKEKLKLCHTINGSGLAVGRTLVAILENYQKPDGSVVVPEVLRPYMGG 493          
BLAST of NO12G01920 vs. NCBI_GenBank
Match: XP_002183462.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC45162.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 478.0 bits (1229), Expect = 3.700e-131
Identity = 251/439 (57.18%), Postives = 306/439 (69.70%), Query Frame = 0
Query:   93 KARHASEEQMSSVDDVGSLNRRRKELVKEQQGALAQRKMLSAEIGKLMKEKKNEEATK------LKSQVEYASSVAATAEEQLLDLEQEMELLMYQIPNLLDDRVPEGKDEEANVVVTEWGTDKRKI------GEGF--LWHDDIASKVGGYDPSAAAKLSGARFSVLSGPVARLERAIIQFFLDRHTDRNGYREVSVPYIVSRSTLTGTGQLPKFENDLFAV---NHQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLPYRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGLRFRPAPMASATEEGKKGKKSTVLCHTINGSGLAVGRTLVAILENYQHEDGSVSIPEVLVPYMGG 515
            +AR AS +   + + + +L+  R +L++E+ G L QRK  SA +GKLM+ K N ++++                     E  L +++  M+ L+  IPNLLDD+VP G+DE  N  V+ WG DK  +       + F  LWHDD+AS + GY   AA K+SGARF  LSG +A+LERAI  F +D HT ++GY EVSVP++V RS L GT QLPKF+ DLFA+   +H  NGEDAFLIPTAEVP+TN+HR ++L+ S LPLSYV  TPCFRAEAGSYGRDTKGL+R HQF KVELVKITT + S AEHE LT HAE  L+ L LPYRKVRLCSGDIGF+A HCYDLEVWLP    +REI+SCSN GDFQARRM LR+RP P      +G   K   VLCHTINGSGLAVGRTLVA+LENYQ  DGSV +PEVL PYMGG
Sbjct:    1 QARSASSDTSEAAEQIANLSEDRVKLIQERDGFLNQRKEASAVVGKLMRNKDNLDSSQXXXXXXXXXXXXXXXXXXXXXEAALEEIQTTMDRLLAGIPNLLDDQVPFGRDESENEEVSRWG-DKDALPARLEWDDSFQPLWHDDVASNLNGYQVEAAVKMSGARFVALSGSIAQLERAIAMFCIDLHTTQHGYTEVSVPFVVGRSALEGTSQLPKFQEDLFAITPESHTCNGEDAFLIPTAEVPVTNMHRGQVLEESDLPLSYVAWTPCFRAEAGSYGRDTKGLIRTHQFQKVELVKITTADTSDAEHETLTAHAEAVLRSLELPYRKVRLCSGDIGFSARHCYDLEVWLPGAGEFREISSCSNTGDFQARRMSLRYRPKP-----ADGSNKKLKPVLCHTINGSGLAVGRTLVAVLENYQTPDGSVVVPEVLRPYMGG 433          
The following BLAST results are available for this feature:
BLAST of NO12G01920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856106.12.400e-21875.76seryl-tRNA synthetase [Nannochloropsis gaditana CC... [more]
CBN73852.11.500e-14854.49conserved unknown protein [Ectocarpus siliculosus][more]
XP_009037100.17.300e-14357.79hypothetical protein AURANDRAFT_26104 [Aureococcus... [more]
EJK56765.11.400e-14155.72hypothetical protein THAOC_23274 [Thalassiosira oc... [more]
KOO31716.11.200e-14057.33seryl-tRNA synthetase [Chrysochromulina sp. CCMP29... [more]
CEL98192.11.900e-13554.84unnamed protein product [Vitrella brassicaformis C... [more]
GAX20495.14.700e-13457.02seryl-tRNA synthetase [Fistulifera solaris][more]
XP_005780726.17.500e-13254.33serine-tRNA ligase [Emiliania huxleyi CCMP1516] >E... [more]
GAX13511.11.700e-13163.03seryl-tRNA synthetase [Fistulifera solaris][more]
XP_002183462.13.700e-13157.18predicted protein, partial [Phaeodactylum tricornu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010117NSK010117Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01920.1NO12G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592228gene_5349Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g9gene4673Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01920.1NO12G01920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01920 ID=NO12G01920|Name=NO12G01920|organism=Nannochloropsis oceanica|type=gene|length=1834bp
ATGTTGGGTCGCCGCTCGACCAAGATCTCGACGTGCCTCAAAACCACGAT
GCTCCTGCTGGTGCTGGTGACCCCGTCCGCCCGGGCCTTTCACGTGgtac
gtacttgtagggtaaaagacaaaaatacagacataagctccatagagatg
gtgtacgggctgttgtccggataaaaggcccttgtcgtaaatatgtctag
tccacacccttccctccccaccacatgtgcgcctacagGCCAGCTTAGGG
AGAAGACCACTCTCCGATTCATCGGCACGATACTTTTCTCGCCATCGCTT
TGGCCGCCAGCATCGACAAGAAGGTGTCAGCATGATGGCGGAACGGCCCA
GCTCAGCGGGCAAGGGCCTGGACGTCAGGCTTGTCACTGACGAGCCTGAC
CTCGTCATGGCCCACCTCAAAGCACGCCATGCCTCGGAGGAGCAGATGTC
CAGCGTGGACGACGTTGGATgtaagacaatgcctatagtgctgagtgact
tatcgtgtgtgtgtggtattcgcttgagcctcacgctcggctcattcgtc
tcaaatctcccttccccaacagCTCTTAATCGACGACGCAAAGAGCTAGT
AAAAGAGCAACAAGGGGCACTAGCACAGCGCAAGATGCTCTCCGCAGAGA
TTGGAAAGCTAATGAAGGAAAAGAAGAACGAGGAGGCAACGAAGCTCAAG
TCTCAAGTAGAATACGCGAGCAGCGTGGCGGCCACGGCGGAGGAGCAACT
CCTGGATCTCGAGCAAGAAATGGAGTTGCTTATGTACCAGATTCCCAACC
TACTGGACGACCGCGTTCCAGAGGGGAAGGACGAGGAGGCAAACGTAGTG
GTAACTGAATGGGGGACAGATAAACGTAAGATTGGAGAGGGTTTTCTGTG
GCATGATGACATTGCGAGTAAGGTGGGTGGGTACGATCCTTCCGCTGCAG
CCAAGCTGTCAGGTGCACGTTTCAGCGTGTTGAGCGGGCCGGTCGCAAGG
TTGGAAAGGGCGATAATCCAGTTTTTCTTGGACAGGCATACAGACAGAAA
TGGCTACAGGGAGGTATCTGTGCCTTACATCGTGAGTCGCTCAACGTTGA
CGGGGACGGGGCAACTGCCAAAGTTTGAGAACGATCTTTTTGCGGTTAAC
CACCAAGTGAATGGCGAAGATGCATTTTTGATTCCTACGGCTGAGGTGCC
GATCACAAATTTGCATCGGGATGAGATTCTGGATGCGTCACAGTTGCCTT
TGAGCTACGTGGGCCTCACGCCTTGCTTTCGGGCGGAGGCTGGCTCGTAT
GGCCGTGACACCAAGGGGTTGCTCCGTCAACACCAGTTTCACAAGGTGGA
GCTTGTGAAAATTACGACGCCGGAGCAGAGTAGTGCGGAGCATGAGGCAT
TGACACAGCATGCGGAGGAGTGTTTGAAGTTGTTGGGTTTGCCCTATCGC
AAGGTCCGCCTATGTTCGGGCGATATCGGATTTGCTGCCACTCACTGCTA
CGACTTGGAAGTTTGGTTGCCCGCGCAGCAGACGTACCGGGAAATCGCAT
CTTGCTCCAATTGCGGTGACTTCCAAGCACGACGGATGGGTCTGCGATTC
CGACCGGCTCCGATGGCAAGTGCGACGGAGGAGGGGAAGAAGGGGAAGAA
GAGCACGGTCCTGTGTCATACCATCAATGGATCGGGCTTGGCAGTGGGAC
GGACGCTGGTGGCGATTTTGGAAAATTATCAGCATGAAGATGGGAGCGTG
AGTATACCCGAGGTATTGGTTCCGTACATGGGGGGCATGGCAAGATTGGA
GCCTGTAGTCAAGAAGAAGACAGCATATAAATGA
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protein sequence of NO12G01920.1

>NO12G01920.1-protein ID=NO12G01920.1-protein|Name=NO12G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MLGRRSTKISTCLKTTMLLLVLVTPSARAFHVASLGRRPLSDSSARYFSR
HRFGRQHRQEGVSMMAERPSSAGKGLDVRLVTDEPDLVMAHLKARHASEE
QMSSVDDVGSLNRRRKELVKEQQGALAQRKMLSAEIGKLMKEKKNEEATK
LKSQVEYASSVAATAEEQLLDLEQEMELLMYQIPNLLDDRVPEGKDEEAN
VVVTEWGTDKRKIGEGFLWHDDIASKVGGYDPSAAAKLSGARFSVLSGPV
ARLERAIIQFFLDRHTDRNGYREVSVPYIVSRSTLTGTGQLPKFENDLFA
VNHQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAG
SYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLP
YRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGL
RFRPAPMASATEEGKKGKKSTVLCHTINGSGLAVGRTLVAILENYQHEDG
SVSIPEVLVPYMGGMARLEPVVKKKTAYK*
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Synonyms
Publications