NO12G01900, NO12G01900 (gene) Nannochloropsis oceanica

Overview
NameNO12G01900
Unique NameNO12G01900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length630
Alignment locationchr12:545245..545874 -

Link to JBrowse

Properties
Property NameValue
DescriptionmRNA splicing factor, Cwf18
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:545245..545874 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013169mRNA_splic_Cwf18
Homology
[Close]
BLAST of NO12G01900 vs. NCBI_GenBank
Match: EWM25853.1 (mRNA splicing factor, Cwf18 [Nannochloropsis gaditana])

HSP 1 Score: 142.1 bits (357), Expect = 1.600e-30
Identity = 84/143 (58.74%), Postives = 103/143 (72.03%), Query Frame = 0 
Query:    1 MATTAKKILKFRNYRPADTSLVGPQTATS-GEGNAAVAFKASEEPLADRREGRQQAGADQQQKRHEPDHQQAQLPHLRKEEEDAIQRELRRYEEEHGSGGQLNVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQE 143
            MATT+KK LKFRNYRPAD SLV   TATS G G      K+ E+  A      +        + ++ + Q  +   ++K+EEDAIQREL+R+E EHGSGGQLNVAPRK NWDLKRDVAKK+AKLNRLTQKAI+E+L+E+LAQE
Sbjct:    1 MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLNVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQE 143
[Close]
BLAST of NO12G01900 vs. NCBI_GenBank
Match: XP_005856117.1 (coiled-coil domain-containing protein 12 [Nannochloropsis gaditana CCMP526] >EKU20253.1 coiled-coil domain-containing protein 12 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 139.8 bits (351), Expect = 8.100e-30
Identity = 83/143 (58.04%), Postives = 102/143 (71.33%), Query Frame = 0 
Query:    1 MATTAKKILKFRNYRPADTSLVGPQTATS-GEGNAAVAFKASEEPLADRREGRQQAGADQQQKRHEPDHQQAQLPHLRKEEEDAIQRELRRYEEEHGSGGQLNVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQE 143
            MATT+KK LKFRNYRPAD SLV   TATS G G      K+ E+  A      +        + ++ + Q  +   ++K+EEDAIQREL+R+E EHGSGGQL VAPRK NWDLKRDVAKK+AKLNRLTQKAI+E+L+E+LAQE
Sbjct:    1 MATTSKKPLKFRNYRPADASLVSLSTATSTGSGLVPTGAKSVEDSAAGVPRPNEVRPPPAHAENNQGEEQPKKAEDVKKDEEDAIQRELKRHEAEHGSGGQLKVAPRKANWDLKRDVAKKLAKLNRLTQKAIIEILQEKLAQE 143
[Close]
BLAST of NO12G01900 vs. NCBI_GenBank
Match: CBN74611.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.4 bits (163), Expect = 5.100e-8
Identity = 31/51 (60.78%), Postives = 43/51 (84.31%), Query Frame = 0 
Query:   92 EEEHGSGGQLNVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQE 143
            ++E    G+LN+AP+K NWDLKRDV KK+ KL+R TQ+AIVE++RER+A+E
Sbjct:  105 QKETQDEGELNIAPKKANWDLKRDVEKKLEKLDRRTQRAIVEIIRERMAEE 155
[Close]
BLAST of NO12G01900 vs. NCBI_GenBank
Match: XP_003401446.2 (coiled-coil domain-containing protein 12 [Bombus terrestris])

HSP 1 Score: 65.1 bits (157), Expect = 2.500e-7
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 0 
Query:  102 NVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQE 143
            N+APRKP+WDLKRDVAKK+ KL R TQKAI EL+R+RL QE
Sbjct:  103 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRDRLKQE 143
[Close]
BLAST of NO12G01900 vs. NCBI_GenBank
Match: XP_003487410.2 (coiled-coil domain-containing protein 12 [Bombus impatiens])

HSP 1 Score: 65.1 bits (157), Expect = 2.500e-7
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 0 
Query:  102 NVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQE 143
            N+APRKP+WDLKRDVAKK+ KL R TQKAI EL+R+RL QE
Sbjct:  103 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRDRLKQE 143
[Close]
BLAST of NO12G01900 vs. NCBI_GenBank
Match: XP_003694341.1 (PREDICTED: coiled-coil domain-containing protein 12 [Apis florea])

HSP 1 Score: 64.3 bits (155), Expect = 4.300e-7
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0 
Query:  102 NVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQ 142
            N+APRKP+WDLKRDVAKK+ KL R TQKAI EL+RERL Q
Sbjct:   93 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRERLKQ 132
[Close]
BLAST of NO12G01900 vs. NCBI_GenBank
Match: XP_006624564.1 (PREDICTED: coiled-coil domain-containing protein 12-like [Apis dorsata])

HSP 1 Score: 64.3 bits (155), Expect = 4.300e-7
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0 
Query:  102 NVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQ 142
            N+APRKP+WDLKRDVAKK+ KL R TQKAI EL+RERL Q
Sbjct:   93 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRERLKQ 132
[Close]
BLAST of NO12G01900 vs. NCBI_GenBank
Match: KOX80710.1 (Coiled-coil domain-containing protein 12 [Melipona quadrifasciata])

HSP 1 Score: 64.3 bits (155), Expect = 4.300e-7
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0 
Query:  102 NVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQ 142
            N+APRKP+WDLKRDVAKK+ KL R TQKAI EL+RERL Q
Sbjct:   93 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRERLKQ 132
[Close]
BLAST of NO12G01900 vs. NCBI_GenBank
Match: XP_623598.1 (PREDICTED: coiled-coil domain-containing protein 12 [Apis mellifera])

HSP 1 Score: 64.3 bits (155), Expect = 4.300e-7
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0 
Query:  102 NVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQ 142
            N+APRKP+WDLKRDVAKK+ KL R TQKAI EL+RERL Q
Sbjct:   93 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRERLKQ 132
[Close]
BLAST of NO12G01900 vs. NCBI_GenBank
Match: XP_016908672.1 (PREDICTED: coiled-coil domain-containing protein 12 [Apis cerana])

HSP 1 Score: 64.3 bits (155), Expect = 4.300e-7
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0 
Query:  102 NVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQ 142
            N+APRKP+WDLKRDVAKK+ KL R TQKAI EL+RERL Q
Sbjct:   93 NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRERLKQ 132
The following BLAST results are available for this feature:
BLAST of NO12G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25853.11.600e-3058.74mRNA splicing factor, Cwf18 [Nannochloropsis gadit... [more]
XP_005856117.18.100e-3058.04coiled-coil domain-containing protein 12 [Nannochl... [more]
CBN74611.15.100e-860.78conserved unknown protein [Ectocarpus siliculosus][more]
XP_003401446.22.500e-775.61coiled-coil domain-containing protein 12 [Bombus t... [more]
XP_003487410.22.500e-775.61coiled-coil domain-containing protein 12 [Bombus i... [more]
XP_003694341.14.300e-777.50PREDICTED: coiled-coil domain-containing protein 1... [more]
XP_006624564.14.300e-777.50PREDICTED: coiled-coil domain-containing protein 1... [more]
KOX80710.14.300e-777.50Coiled-coil domain-containing protein 12 [Melipona... [more]
XP_623598.14.300e-777.50PREDICTED: coiled-coil domain-containing protein 1... [more]
XP_016908672.14.300e-777.50PREDICTED: coiled-coil domain-containing protein 1... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010112NSK010112Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01900.1NO12G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592220gene_5347Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g7gene4671Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01900.1NO12G01900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01900 ID=NO12G01900|Name=NO12G01900|organism=Nannochloropsis oceanica|type=gene|length=630bp
ATGGCTACGACCGCCAAGAAGgtgacttggtccattcccaattccaacat
gtccaacttcctccctcctcctcgaacaaagccactctcacacccttctc
atcaaccctcccccacatagATCTTGAAATTCCGGAACTACAGACCAGCC
GATACCTCATTGGTAGGCCCACAGACCGCCACGTCGGGGGAGGGAAATGC
TGCAGTTGCATTCAAAGCCTCCGAAGAGCCTCTGGCAGATCGTCGCGAGG
GCCGCCAGCAAGCTGGCGCTGATCAACAACAGAAGCGTCACGAGCCCGAC
CATCAGCAAGCGCAGCTACCACACCTTAGAAAAGAGGAGGAGGACGCTAT
TCAACGGGAATTGCGACGGTACGAGGAGGAGCATGGAAGTGGGGGCCAGC
TAAATGTAGCGCCGCGAAAGCCCAATTGGGATCTAAAGCGGGATGTGGCG
AAAAAGGTGGCGAAGTTGAATCGACTCACCCAAAAAGCTATCGTAGAGTT
GCTCCGAGAGAGGTTGGCTCAGGAGGCAGAGGATGAGGGCAGCAGTAGTA
GTGAAAGTGATAGTGGCAGCAGTGTAAGTGAAGAAGAGAGCGAGGAAAAA
GACCAGGAAGGGAAGAGCGACAAAGAGTAA
back to top

protein sequence of NO12G01900.1

>NO12G01900.1-protein ID=NO12G01900.1-protein|Name=NO12G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MATTAKKILKFRNYRPADTSLVGPQTATSGEGNAAVAFKASEEPLADRRE
GRQQAGADQQQKRHEPDHQQAQLPHLRKEEEDAIQRELRRYEEEHGSGGQ
LNVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQEAEDEGSSS
SESDSGSSVSEEESEEKDQEGKSDKE*
back to top
Synonyms
Publications