NO12G01890, NO12G01890 (gene) Nannochloropsis oceanica

Overview
NameNO12G01890
Unique NameNO12G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1977
Alignment locationchr12:543235..545211 +

Link to JBrowse

Properties
Property NameValue
DescriptionRadical sam cfr family
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:543235..545211 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0016740transferase activity
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR004383rRNA_lsu_MTrfase_RlmN/Cfr
IPR007197rSAM
Homology
BLAST of NO12G01890 vs. NCBI_GenBank
Match: EWM25811.1 (radical sam cfr family [Nannochloropsis gaditana])

HSP 1 Score: 631.3 bits (1627), Expect = 2.500e-177
Identity = 326/456 (71.49%), Postives = 370/456 (81.14%), Query Frame = 0
Query:   11 RRRAARA-GIVAMLVGVLGLVYLRPVVASLSGTSRRGKLAFFGA-GFSALRRQHRLTKVTGLTPTTGAALVQTQAAAXXXAAEEAKN---NSLPKKLMDIYTLTEKEIEDFLQTQLKQPRYRAKQVYAWLYQRGATSFEVMNDLPKALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAPRIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVNVINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQLKNELLAKEI 462
            RR   R   ++ ML+G LG   +RP       T+ R   AFF + G  ++RR           P     L +   A    AA E  N   + LP  L DIY L+E+E+  FLQ  L QP+YRAKQV+AWLYQRGA SFE M+DLPK+LR GLAEHF LGCLE+AFEQVSKDGT+KRAYRLADGQLIE+VLMPYEDGRRTACISSQAGCAMGC FCQTGQMGFARQLT++EIF+QAL FSRDL K G  RLSNVVFMGEGEPLNNR+ VF AVRRLN+DL IGARHITVSTVGLAPRIRDLAD VDD +GEG LLSQIK+AVSLHAT D ERTAIMPVN+RFP+++LM+ACQYYVQRTNRR+SFEWALISGQNDSP+VA+ELG+LL+PLKGKCHVNVINVNPTTGF+G+PG KA+M+RFLNILNEDWGIPATMRVRRG+DINAGCGQLKNELL +E+
Sbjct:   21 RRTLGRTFALLVMLIGALGSTVVRPRTV----TACRSSSAFFASTGVLSIRRWQSAVPGRAYPP-----LPKKAKAVAVPAAAETDNTVVSRLPSALTDIYALSEQELCGFLQNTLHQPKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGG-ERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTREL 466          
BLAST of NO12G01890 vs. NCBI_GenBank
Match: XP_005856103.1 (radical sam cfr family [Nannochloropsis gaditana CCMP526] >EKU20239.1 radical sam cfr family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 561.2 bits (1445), Expect = 3.100e-156
Identity = 269/316 (85.13%), Postives = 298/316 (94.30%), Query Frame = 0
Query:  146 MNDLPKALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAPRIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVNVINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQLKNELLAKEI 462
            M+DLPK+LR GLAEHF LGCLE+AFEQVSKDGT+KRAYRLADGQLIE+VLMPYEDGRRTACISSQAGCAMGC FCQTGQMGFARQLT++EIF+QAL FSRDL K G  RLSNVVFMGEGEPLNNR+ VF AVRRLN+DL IGARHITVSTVGLAPRIRDLAD VDD +GEG LLSQIK+AVSLHAT D ERTAIMPVN+RFP+++LM+ACQYYVQRTNRR+SFEWALISGQNDSP+VA+ELG+LL+PLKGKCHVNVINVNPTTGF+G+PG KA+M+RFLNILNEDWGIPATMRVRRG+DINAGCGQLKNELL +E+
Sbjct:    1 MSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGG-ERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTREL 315          
BLAST of NO12G01890 vs. NCBI_GenBank
Match: XP_005836654.1 (hypothetical protein GUITHDRAFT_85651 [Guillardia theta CCMP2712] >EKX49674.1 hypothetical protein GUITHDRAFT_85651 [Guillardia theta CCMP2712])

HSP 1 Score: 422.2 bits (1084), Expect = 2.300e-114
Identity = 220/361 (60.94%), Postives = 266/361 (73.68%), Query Frame = 0
Query:  103 MDIYTLTEKEIEDFLQTQLKQPRYRAKQVYAWLYQRGATSFEVMNDLPKALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAPRIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLL-------APLKGKCHVNVINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQLKNEL 457
            +++Y L +  +E+ L     +P++RAKQ++ W+  +GAT F+ M DLPK LRA LAE   LG LE+A EQVSKDGTIKRAY+L DGQ+IESVLMPY+DGRRTACISSQAGCAMGC FC TGQMGFARQLT  EI +Q   F  +L  +G  RLSNVV MG GEPL N   V  AVRR+N DL IGARHIT+STVGL PRIR LA+             QIKLAVSLHA +D ER AIMPVN RFP+ADLM  C++YV++T RRISFEWALI+GQND+P+VA++LG LL         L   CHVN+I +NPT GFDGKP   A  + F+ IL++ +G+ AT RVRRGIDI+AGCGQLK++L
Sbjct:   49 VNLYALNQTRMEELL-LDWGEPKFRAKQIWQWINVKGATDFDKMQDLPKGLRAKLAEKAVLGNLEIAVEQVSKDGTIKRAYKLKDGQMIESVLMPYDDGRRTACISSQAGCAMGCVFCATGQMGFARQLTSVEILEQVQRFHVELLSKG-ERLSNVVLMGMGEPLGNYNNVMEAVRRINQDLGIGARHITISTVGLVPRIRRLAEE----------NMQIKLAVSLHAASDEERNAIMPVNLRFPLADLMETCKFYVEKTGRRISFEWALIAGQNDTPEVANKLGHLLKWNDFNPQGLNKMCHVNLIPLNPTAGFDGKPTKAAECDIFIKILSK-YGVTATTRVRRGIDIDAGCGQLKSKL 396          
BLAST of NO12G01890 vs. NCBI_GenBank
Match: CBJ28680.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 409.1 bits (1050), Expect = 2.000e-110
Identity = 207/343 (60.35%), Postives = 260/343 (75.80%), Query Frame = 0
Query:  123 QPRYRAKQVYAWLYQRGATSFEVMNDLPKALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAPRIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVNVINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQLKNELLAKEILEGG 466
            +P++RAKQV  W+++ GA SFE M ++PK LRA LA+  ++G LE+A  QVSKDGT K AYRL+DGQ+IESVLMPY DGRRTACISSQAGCAMGC FC TGQMGF RQL+ AEIF+QA  FS++L K G  RLSNVVFMG GEPL N K V  AVRR+N++L IGARHIT+STVGL PRI  L+              Q+KLAVSLHA  DRER A++PVN+RFP+++LM AC+ YV  + RR++FEWALI G+NDS +VA ELG+LL PLKG CHVN+I +NPT G+ G P    ++ +F+ +L ++ G+PAT R+RRGIDI+AGCGQL  ++   E+L  G
Sbjct:    3 EPKFRAKQVLKWIFEGGAESFEDMANIPKTLRAKLAKVATVGALEVAARQVSKDGTKKLAYRLSDGQIIESVLMPYSDGRRTACISSQAGCAMGCVFCATGQMGFKRQLSAAEIFEQAYRFSQELQKRG-DRLSNVVFMGMGEPLANYKNVMEAVRRINTELGIGARHITISTVGLVPRILRLSQE----------NIQVKLAVSLHAANDRERGALLPVNRRFPLSELMDACREYVDVSGRRMTFEWALIQGENDSAEVASELGRLLRPLKGMCHVNIIPLNPTDGYKGGPSMADAVNQFVEVLAKN-GVPATPRIRRGIDIDAGCGQLTAKVSQDEVLGKG 333          
BLAST of NO12G01890 vs. NCBI_GenBank
Match: OQY84117.1 (23S rRNA (adenine(2503)-C(2))-methyltransferase [Anaerolineae bacterium UTCFX5])

HSP 1 Score: 401.7 bits (1031), Expect = 3.200e-108
Identity = 203/358 (56.70%), Postives = 267/358 (74.58%), Query Frame = 0
Query:  102 LMDIYTLTEKEIEDFLQTQLKQPRYRAKQVYAWLYQRGATSFEVMNDLPKALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAPRIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVNVINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQLKNELLAK 460
            ++++Y LT  E+ D L T  +QPR+RA QV++WLY + A  FE M DLP++LR  L++  +LG L +A E+ S DGT KR Y L DGQLIESVLMPY+D RRTACIS+QAGCAMGC FC TGQMGFAR L+ AEI +QA+ F+R L +EG  RLSNVV MG GEP +N +   +AVRRL +DL IGARHIT+STVGL P+IR  AD             Q++LA+SLHA TD ER+A++P+NKR+P+A+L+ AC+  V++T RR++FEWALI+G+NDSP+ A  LG LL+ L   CHVN+I +NPT G+ G+P   A++ RF++IL E + +PAT+RVRRGIDI+AGCGQLK  +L +
Sbjct:    2 MINLYELTRPEL-DSLLTSWQQPRFRAGQVWSWLYDKLAADFESMTDLPESLRRQLSDTCTLGVLHIAAERASSDGTAKRVYELPDGQLIESVLMPYDDDRRTACISTQAGCAMGCVFCATGQMGFARHLSAAEIVEQAIHFARQLHREG-ERLSNVVLMGMGEPFHNYEASLAAVRRLMADLGIGARHITISTVGLVPQIRRFADEA----------LQVRLAISLHAATDDERSALLPINKRYPLAELLDACREVVEKTGRRVTFEWALIAGENDSPEQAHALGSLLSDL--NCHVNLIPLNPTGGYAGRPSDPAAVRRFIDIL-ETYHVPATVRVRRGIDIDAGCGQLKAAVLRR 344          
BLAST of NO12G01890 vs. NCBI_GenBank
Match: KXK22906.1 (ribosomal RNA large subunit methyltransferase N [Chloroflexi bacterium OLB15])

HSP 1 Score: 394.4 bits (1012), Expect = 5.100e-106
Identity = 203/358 (56.70%), Postives = 257/358 (71.79%), Query Frame = 0
Query:  102 LMDIYTLTEKEIEDFLQTQLKQPRYRAKQVYAWLYQRGATSFEVMNDLPKALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAPRIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVNVINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQLKNELLAK 460
            ++D+YTL +  +E  L     +PR+RA Q++ WLY R   SF  M +LP  LR  L     LG L +  EQ S DGT+KR Y L DGQ IE+VLM Y+D RRTACIS+QAGCAMGC FC TGQMGFAR LT  EIF+QA+ ++RDLA  G  RLSNVV MG GEP +N      AVRRL SDL++GARHITVSTVGL P IR  AD       EG    Q+KLA+SLHA TD ER A++PVN+++P+ +L+SAC+YY  ++ RRISFEW LI G+ND+P+ A++LGQLL  L   CHVNVI +NPTTG+ G P  +  +++F+NIL E  GIPAT+R+RRGIDI+AGCGQLK+++L +
Sbjct:    1 MIDLYTLDKPALETLLAV-WDEPRFRADQLWNWLYDRRVASFAEMTNLPIRLRQRLEAETQLGSLVLEDEQSSHDGTVKRLYSLHDGQFIEAVLMEYDDDRRTACISTQAGCAMGCVFCATGQMGFARNLTADEIFEQAMLYARDLAARG-DRLSNVVLMGMGEPFHNYDNAIHAVRRLMSDLELGARHITVSTVGLVPMIRRFAD-------EG---LQVKLAISLHAATDEERGALLPVNRKYPLRELISACRYYTDKSGRRISFEWTLIQGENDTPEQAEKLGQLLRGL--NCHVNVIPLNPTTGYGGHPSAQGRIQQFINILGEH-GIPATVRIRRGIDIDAGCGQLKSKVLKR 343          
BLAST of NO12G01890 vs. NCBI_GenBank
Match: PJF31310.1 (23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Chloroflexi bacterium])

HSP 1 Score: 378.3 bits (970), Expect = 3.800e-101
Identity = 192/358 (53.63%), Postives = 256/358 (71.51%), Query Frame = 0
Query:  103 MDIYTLTEKEIEDFLQTQLKQPRYRAKQVYAWLYQRGATSFEVMNDLPKALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAPRIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVNVINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQLKNELLAKE 461
            +++Y L++ E+ DF+   L  P++RA QV+ WLY + AT FE M +LP +LR  LAE   +G L ++ +Q S DGT KR Y+L DGQLIESVLMPY+D RRTACIS+QAGCAMGC FC TGQMGFAR L+  EI +QA+ F+  L  +G  RLSNVV MG GEP +N +    AVR L  DL IGARHIT+STVGL P+IR  AD       EG    Q++LA+SLHA TD ER+A++P+NKR+ ++ LM AC+YY+Q+T RR++FEWALI+G+ D+P  A  LG+LL  +   CHVN I +NPT G+DG P   ++ + F +IL   +G+  T+RVRRGIDI+AGCGQLK+ ++ ++
Sbjct:    5 INLYALSKSELTDFI-VALGYPKFRASQVWDWLYTQYATDFEAMTNLPASLRQALAEKTRIGILTLSAQQSSHDGTTKRLYQLPDGQLIESVLMPYDDDRRTACISTQAGCAMGCVFCATGQMGFARHLSAHEIIEQAMRFAAMLHADG-ERLSNVVLMGMGEPFHNYEESIKAVRCLMDDLNIGARHITISTVGLVPQIRRFAD-------EG---LQVRLAISLHAATDDERSALLPINKRWNLSQLMDACRYYIQKTGRRVTFEWALINGKTDTPDQAHALGKLLRGM--LCHVNAIPLNPTAGYDGNPSHPSNAQEFAHIL-ASYGVEMTIRVRRGIDIDAGCGQLKSSIIKRQ 347          
BLAST of NO12G01890 vs. NCBI_GenBank
Match: PJF22838.1 (23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Chloroflexi bacterium])

HSP 1 Score: 374.0 bits (959), Expect = 7.100e-100
Identity = 195/357 (54.62%), Postives = 256/357 (71.71%), Query Frame = 0
Query:  102 LMDIYTLTEKEIEDFLQTQLKQPRYRAKQVYAWLYQRGATSFEVMNDLPKALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAPRIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVNVINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQLKNELLA 459
            ++++Y L++ E+ + L T   +P +RAKQV+AWLY +  +S ++M ++P +LR  L    +LG L +A EQVS+DGT+KR YRL DGQLIESVLM Y+D RRTACIS+QAGCAMGC FC TGQMGF R L+  EIF+QA++F++ L  EG  RLSNVV MG GEP +N     +A+RRL  DL IGARHITVSTVGL P+IR  AD       EG    Q++LA+SLHA TD ER+A++PVNKR+ +A LM AC+ Y+ +T RRI+FEWALI G+ D+   A  LG+LL+ +   CHVN I +NPT G+ G P    + ERF  IL E +G+  ++RVRRGIDI+AGCGQLK  ++A
Sbjct:    1 MINLYALSKDELTELL-TTWGEPPFRAKQVWAWLYDKRVSSMDMMQNIPASLRERLKAEATLGTLSLATEQVSRDGTVKRLYRLPDGQLIESVLMLYDDDRRTACISTQAGCAMGCVFCATGQMGFGRNLSATEIFEQAVYFAQLLQAEG-ERLSNVVLMGMGEPFHNYDASLTAIRRLMDDLGIGARHITVSTVGLVPQIRRFAD-------EG---LQVRLAISLHAATDEERSALLPVNKRWNLAALMQACREYIGKTGRRITFEWALIHGKTDTEAQAHALGKLLSGM--LCHVNAIPLNPTKGYLGAPSNLQAAERFQQIL-ESYGVSMSVRVRRGIDIDAGCGQLKASVIA 342          
BLAST of NO12G01890 vs. NCBI_GenBank
Match: PJF41995.1 (23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Chloroflexi bacterium])

HSP 1 Score: 372.1 bits (954), Expect = 2.700e-99
Identity = 198/360 (55.00%), Postives = 252/360 (70.00%), Query Frame = 0
Query:  103 MDIYTLTEKEIEDFLQTQLKQPRYRAKQVYAWLYQRGATSFEVMNDLPKALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGLYRLSNVVFMGEGEPLNNRKMVFSAVRRL--NSDLKIGARHITVSTVGLAPRIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVNVINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQLKNELLAKE 461
            M+ Y LT +++E  L T    PR+RAKQV+ W YQ+  + F+ M +LPK +RA L+E   LG L +  E+ S+DGTIKR YRL D Q IESVLM Y+DGRRTACIS+QAGCAMGC FC TGQMGFAR LT  EI +QAL F+R L  EG  RLSN+V MG GEPL+N +    A++R      L IG RHIT+S+VGL P IR  AD       EG    Q+ LA+SLHA  D +R+A++PVNKR+P+ DLM AC YYVQ+TNRR++FEWALI  Q D    A+ELGQLL  L   CHVNVI +NPT GF G+P     ++ F++ L+  +GI +++RVRRGIDI AGCGQLK ++L+++
Sbjct:    1 MNFYDLTYEQLEKLL-TAWGFPRFRAKQVWTWAYQQKVSDFQAMTNLPKNMRAQLSERMMLGNLTLVTERHSRDGTIKRLYRLPDDQYIESVLMVYDDGRRTACISTQAGCAMGCVFCATGQMGFARHLTAGEIVEQALHFARLLEAEG-ERLSNIVLMGMGEPLHNYEATLQAIKRFIATDGLGIGQRHITLSSVGLVPAIRRFAD-------EG---LQVGLAISLHAANDADRSALLPVNKRWPLQDLMDACTYYVQKTNRRVTFEWALIHEQTDHVHQAEELGQLLQGL--LCHVNVIPLNPTEGFAGQPSDPERVQAFIDTLSR-YGISSSVRVRRGIDIEAGCGQLKAKILSQQ 345          
BLAST of NO12G01890 vs. NCBI_GenBank
Match: CEM09761.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 371.3 bits (952), Expect = 4.600e-99
Identity = 190/340 (55.88%), Postives = 244/340 (71.76%), Query Frame = 0
Query:  124 PRYRAKQVYAWLYQRGATSFEVMNDLPKALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAPRIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGK---CHVNVINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQLKNELLAKE 461
            P YRAKQ++  LY+R A SF+ M +LPK +R  L    + G L +A E+VS+DGT+KRAY L DGQ+IESVLMPY+DGRRTACISSQAGCAMGC FC TGQMGFARQL+ AEI +QAL F+R+L + G  RLSNVV MG GEPL N      AV R+N DL +G RHITVSTVGL  RI+ +AD       EG    Q+ LAVSLHA +D++R+A++P+NK+ P+  +M AC YY  +T RRISFEWALI+G+ D+P+ AD+LG+LL+    +    HVN+I VNPT G+DG+P    ++  F++ L    G+ AT R+RRGIDI  GCGQLK E + ++
Sbjct:   14 PAYRAKQIWQHLYERRAGSFDAMTNLPKTMRDDLKASLTFGDLMVADERVSRDGTLKRAYVLRDGQVIESVLMPYKDGRRTACISSQAGCAMGCVFCATGQMGFARQLSSAEIVEQALIFARELHQRG-ERLSNVVLMGMGEPLANYDNAMEAVERINHDLGVGMRHITVSTVGLPERIKQIAD-------EG---RQVTLAVSLHAASDQQRSALIPINKKHPIQQVMQACVYYCGKTGRRISFEWALIAGETDTPQQADQLGRLLSRAMRQGLIGHVNLIPVNPTEGYDGRPSSPLAVSSFIDTLKRH-GVGATARLRRGIDIEGGCGQLKAETIKRQ 341          
The following BLAST results are available for this feature:
BLAST of NO12G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25811.12.500e-17771.49radical sam cfr family [Nannochloropsis gaditana][more]
XP_005856103.13.100e-15685.13radical sam cfr family [Nannochloropsis gaditana C... [more]
XP_005836654.12.300e-11460.94hypothetical protein GUITHDRAFT_85651 [Guillardia ... [more]
CBJ28680.12.000e-11060.35conserved unknown protein [Ectocarpus siliculosus][more]
OQY84117.13.200e-10856.7023S rRNA (adenine(2503)-C(2))-methyltransferase [A... [more]
KXK22906.15.100e-10656.70ribosomal RNA large subunit methyltransferase N [C... [more]
PJF31310.13.800e-10153.6323S rRNA (adenine(2503)-C(2))-methyltransferase Rl... [more]
PJF22838.17.100e-10054.6223S rRNA (adenine(2503)-C(2))-methyltransferase Rl... [more]
PJF41995.12.700e-9955.0023S rRNA (adenine(2503)-C(2))-methyltransferase Rl... [more]
CEM09761.14.600e-9955.88unnamed protein product [Vitrella brassicaformis C... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010111NSK010111Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01890.1NO12G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100021g6gene4670Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01890.1NO12G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01890 ID=NO12G01890|Name=NO12G01890|organism=Nannochloropsis oceanica|type=gene|length=1977bp
ACAGGCCTACGGGGACAGGCAGGCGGGGAACTGCTTCTTCTCTAGTGTTG
TCACCGGCCGCTCAATGGCTCCAGTGCAGGCAACACAGCAGCCAAGAAGA
AGAGCTGCGAGAGCGGGCATAGTAGCCATGTTAGTGGGCGTCCTCGGCCT
GGTATACCTGCGCCCTGTGGTGGCCTCGTTGTCAGGAACATCGCGGCGTG
GCAAGTTGGCCTTTTTTGGAGCCGGGTTTAGCGCTCTGCGCCGTCAGCAT
CGGCTCACCAAGGTTACAGGCCTGACCCCGACGACGGGCGCCGCGCTCGT
GCAAACGCAGGCAGCGGCCGTGATCGTCGCAGCAGAGGAAGCCAAAAACA
ATAGCCTTCCAAAGAAGCTGATGGACATTTACACGCTGACGGAGAAGGAG
ATTGAGGATTTTTTGCAGACGCAGCTGAAGCAGCCTCGATACCGAGCCAA
GCAAGTGTATGCGTGGCTGTATCAACGCGGGGCCACCTCGTTCGAGGTAA
TGAACGACTTGCCCAAGGCGTTGCGTGCAGGCCTCGCAGAGCATTTTTCT
TTGGGCTGCTTAGAGATGGCTTTTGAGCAGGTTAGCAAGGATGGGACAAT
TAAACGTGCATATCGCTTGGCGGACGGTCAGTTGATTGAGTCGGTTTTGA
TGCCTTATGAGGATGGACGACGCACGGCCTGCATTTCGAGCCAGGCGGGA
TGTGCGATGGGCTGTGCATTTTGTCAAACGGGGCAGATGGGTTTTGCACG
GCAGTTGACCGACGCAGAAATTTTTCAGCAGGCGCTGTTTTTCTCCCGGG
ACTTAGCGAAGGAAGGGTTGTATCGACTATCAAATGTGGTGTTTATGGGG
GAGGGAGAGCCTCTGAATAACAGAAAAATGGTTTTCAGTGCGGTGCGTCG
GTTGAATTCTGATTTGAAGATTGGGGCGAGGCATATCACTGTGTCGACGG
TGGGTTTGGCTCCGAGGATCAGGGACTTGGCGGATACAGTTGATGATCTT
CAGGGGGAGGGGGGGTTGCTCTCGCAGATAAAGTTGGCTGTATCTTTGCA
TGCCACCACGGATAGGGAGCGCACGGCGATTATGCCTGTAAATAAGCGAT
TTCCAGTCGCCGACTTGATGAGCGCGTGTCAGTATTATGTGCAGAGGACG
AATAGGAGGATTAGCTTCGAGTGGGCTTTGATTAGTGGCCAGAACGATAG
CCCCAAGGTGGCTGATGAGTTGGGGCAATTGCTGGCGCCGCTGAAAGGGA
AGTGTCACGTAAATGTGATAAATGTTAATCCAACGACGGGATTTGATGGG
AAGCCGGGGGGGAAGGCGTCGATGGAGCGATTCTTGAATATCTTGAATGA
AGATTGGGGGATTCCGGCGACCATGAGGgtaaggagaaaggtatatgcga
ggttcaaaccggggtcttactctctcccttttttgttcgtacttgtgcca
tacctgcgaggctttgttttccgtgagatatgtcggaataacttgaatga
ggattgggggggttctggcgaccaggagggtgaggaggaggagagggatt
tcctgggctcaatcttccctttcttgtatatgacatttctggcatctcta
tcattcacctctctattgaggaggccagtgatctttgtcggctatttctc
gtggccgccctgaattttttcattgtttcacgccctcctttcgacctcta
cacacatttcttcagGTGAGGCGCGGAATCGACATCAATGCCGGATGTGG
CCAGCTGAAGAATGAATTACTGGCCAAGGAGATCTTGGAGGGAGGGGGTA
GGGCGAACCCAGGTGTCCGGACAATATTGGGGAAAGTGGTGGTGATGGAA
AACAAGGGGTCGACGGAAGAAGAGTAAGGAGAAGGAGTGGGAGTACATGG
ATAGGCATAAGTATTGAAAGGAAATTGAAATAAAGACATTGAAGAGAGGG
GAACGAGATGAAGGCATTTGAACATGT
back to top

protein sequence of NO12G01890.1

>NO12G01890.1-protein ID=NO12G01890.1-protein|Name=NO12G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MAPVQATQQPRRRAARAGIVAMLVGVLGLVYLRPVVASLSGTSRRGKLAF
FGAGFSALRRQHRLTKVTGLTPTTGAALVQTQAAAVIVAAEEAKNNSLPK
KLMDIYTLTEKEIEDFLQTQLKQPRYRAKQVYAWLYQRGATSFEVMNDLP
KALRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYED
GRRTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKE
GLYRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAP
RIRDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVAD
LMSACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVN
VINVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCG
QLKNELLAKEILEGGGRANPGVRTILGKVVVMENKGSTEEE*
back to top
Synonyms
Publications