NO12G01880, NO12G01880 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G01880 vs. NCBI_GenBank
Match: EWM25799.1 (Mitochodrial transcription termination factor [Nannochloropsis gaditana]) HSP 1 Score: 688.3 bits (1775), Expect = 2.200e-194 Identity = 386/500 (77.20%), Postives = 428/500 (85.60%), Query Frame = 0 Query: 1 MPAAEAFAGLPRSRGKRSAHQQHQLQQERSVAVGPVMAGWMSAAGYDEGFG-SKGQDEDDEAKLVERVVEQLVVQRGLGARGVMQVVRKTNPSDLALRWKGWRRSCDCLLSLGFSAQNVTTILQRSGAFLHELDPEADIRRVVFYLWEDLGFEKWGKIGSGLSSWQRHKFKVVTQAPDVLRRKPEGGVEDTVATLEQVGMPTKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPWLLHPRTVEQLRPVVAFLKEGLGVQRVHVVLRGYPQVVLRSVSEDLQPRVVLLQSLGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKAFVKRLPPVMGYPVDWELRKKWGLFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVSTEDVVLLRVGMAGGDAAFAKEFVGVEPETYDDFMLEYKTRTKQERMARTRA 500 +P A AF+G SR H RSVA+ +AGWMS AGYD+G+G ++ D D+ A L V+++L +RGL GV QV+RKT P DLA RW+GWRRSCDCLLSLGFSAQNVT+ILQ S AFLHELDPEADIRRVVFYLWEDLGF WGKIG GL SWQRHK+KVVT AP+VLRRKPEGGVE+TVATLEQVGMPTKY+LDASFRFPSLLNVPPSLIF VSAYLSSTDVGF+PRDLG LYRRNPWLLHPRTVEQLRPVVAFL+E L VQR+HVVLRGYPQVVL+SV+ DLQPRVVLLQSLGIP QIGCMVEAFPLLLSLPLEEQMLPVL+FFQA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+K F+KRLPPV+GYPVDWELRKKW LFQELGL + D A FPG+ SYSLHDRLIPRL+FCR+QGV +DVV LRV MAGGDAAFAKEF+GV+PE Y++F+L+YK R K+ R A+TRA Sbjct: 91 VPGAHAFSGPTPSRSSTLGSHHH----PRSVALESTIAGWMSVAGYDQGYGDNRENDRDERASLYALVMDELAHRRGLSVSGVRQVIRKTKPQDLAARWRGWRRSCDCLLSLGFSAQNVTSILQGSSAFLHELDPEADIRRVVFYLWEDLGFNSWGKIGLGLGSWQRHKYKVVTTAPEVLRRKPEGGVEETVATLEQVGMPTKYILDASFRFPSLLNVPPSLIFCVSAYLSSTDVGFRPRDLGALYRRNPWLLHPRTVEQLRPVVAFLREELQVQRMHVVLRGYPQVVLKSVNADLQPRVVLLQSLGIPSQQIGCMVEAFPLLLSLPLEEQMLPVLFFFQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDVKEFIKRLPPVLGYPVDWELRKKWALFQELGLDASDFAGFPGFVSYSLHDRLIPRLDFCRRQGVLAQDVVALRVVMAGGDAAFAKEFIGVDPEAYEEFLLDYKVRRKEARAAQTRA 586
BLAST of NO12G01880 vs. NCBI_GenBank
Match: CBJ32380.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 156.4 bits (394), Expect = 3.000e-34 Identity = 141/391 (36.06%), Postives = 207/391 (52.94%), Query Frame = 0 Query: 98 WKGWRRSCDCLLSLGFSAQNVTTILQRSGAFLHELDPEADIRRVVFYLWEDLGFEKWGKIGSGLSSWQRHKFKVVTQAPDVLRRKPEGG-VEDTVATLEQVGMPTKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPWLLHPRTVEQLRPVVAFLKEGLGVQRVHVVLRGYPQVVLRSVSEDLQPRVVLLQS-LGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKAFVKRLPPVMGYPVDWELRKKWG-LFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVSTEDVVLLRVGMAGGDAAFAKEFVGVEPETYDDFMLEY 486 WK WR++ D L S GFS +V +L L LD E + + E ++G + +R V+ +AP+VL +P+G + V L +G+ +++ + R+P LL VPP F ++A+L+S +VG K ++G+L R+ PWL+ Q+ PVV FL+ GV V VLR YP+V+ S+ +L PRV L S +G+ + +++ FPL+ +LPL + + XXXXXXXXXXXXXXXXXXXXXXX ++ FV RLPPV+GY V+ L K L +++GL D+ FP +FSY L + PR EF +G +V L + + GDA FA++ V+P Y DF Y Sbjct: 235 WKRWRQNLDGLRSKGFSGTDVCNMLALCPQLL-ALDFEGQVVPTM---------ELLRQLGMRPTDVRR----VIRKAPEVLAPRPDGSTAAEAVDVLRTLGLRRRHLKMEAMRWPQLLAVPPGSFFQLAAFLASEEVGIKSTNIGSLIRQAPWLVLQPIDGQMLPVVRFLRIA-GVVDVERVLRAYPKVLCASIRGELAPRVRFLWSDVGVSEEDLPRVLQTFPLVFALPLSR--MKDVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERHMAGVVRYLKRLGVQNVGRFVSRLPPVLGYDVETNLAPKMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIRG-RPITLVGLNIALHQGDADFARKVARVQPRVYQDFKKAY 607
BLAST of NO12G01880 vs. NCBI_GenBank
Match: XP_009035352.1 (hypothetical protein AURANDRAFT_62430 [Aureococcus anophagefferens] >EGB10571.1 hypothetical protein AURANDRAFT_62430 [Aureococcus anophagefferens]) HSP 1 Score: 129.0 bits (323), Expect = 5.100e-26 Identity = 119/295 (40.34%), Postives = 161/295 (54.58%), Query Frame = 0 Query: 187 VEDTVATLEQVGMPTKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPWLLHPRTVEQLRPVVAFLKEGLGVQRVHVVLRGYPQVVLRSVSEDLQPRVVLLQSLGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKAFVKRLPPVMGYPVDWELRKKWGLFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVSTEDVVLLRVGMAGGDAAFAKEFVGVEPETYDDF 482 + DTV L VG+ TK+V + R+P LL++ + V+ Y++S +GF+ R +G+LYR NPWLL V +R L++ +GV V V+R YP+ +L L+P VL + G+ + +VEAFPLL L++ M PVL F+ XXXXXXXXXXXXXXXXXXXXXXXXX + FV RLPPV+ Y VD +LR K + L D+ FP +FSY L + PR F +Q GV L + GD FA +GV+P+ Y F Sbjct: 191 ISDTVLLLTSVGVRTKHVKEMVVRWPQLLSIEMPQMLAVTDYINS--LGFE-RSIGSLYRANPWLL-AAPVATVRDAATVLRDEVGVTNVENVVRAYPRALLSDRESLLRPLDVLRERAGVDEADLASLVEAFPLLFG--LDDAMGPVLDFWL--XXXXXXXXXXXXXXXXXXXXXXXXXATMRANVKFLEGIGVVNTARFVTRLPPVLAYDVDRDLRPKMAELVKCALSVYDVVRFPAYFSYPLDGVIKPRTAFLKQLGVPITTFPLQAL-FTPGDKEFASRVLGVDPKRYAAF 476
BLAST of NO12G01880 vs. NCBI_GenBank
Match: XP_005712849.1 (unnamed protein product [Chondrus crispus] >CDF33046.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 86.3 bits (212), Expect = 3.800e-13 Identity = 139/425 (32.71%), Postives = 201/425 (47.29%), Query Frame = 0 Query: 79 ARGVMQVVRKTNPSDLALRWKGWRRSCDCLLSLGFSAQNVTTILQRSGA-FLHELDPEADIRRVVFYLWEDLGFEKWGKIGSGLSSWQRHKFKVVTQAPDVLRRKPEGGVEDTVATLEQVGMPTKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPWLLHPRTVEQLRPVVAFLKEGLGVQR---VHVVLRGYPQVVLRSVSEDLQPRVVLLQS--LGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKAFVKRLPPVMGYPVDWELRKKWG-LFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVS-TEDVVLLRVGMAGGDAAFAKEFVGVEPETYDDFMLEYKTRTKQERMA 496 A + V T + + L W D L S + ++ I +R G L L+P A + V+ YL + + + +V+ + PD+L + PE + V LE G+ K + R+P LL + I V+A+L + VGF +L +L RR PW+L ++ P +++LK L + V +R P +L S D +V S +G+ + + +FP L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ VKRLPP++GY +D + K + QELGL S D+ FPG+FSYS + PR +F + +G S TE + + +G+ D F V Y F + K E+ A Sbjct: 68 AADLAYVSLSTGTATVELASPTWSMLMDTLASHDINGSVLSCIAERLGVPELLRLEP-AHVVSVLHYL------------STYVQLADAERNRVIIRRPDIL-KSPE-HLRKAVEALETSGLRLKDIKTVVQRWPGLLLLDARKINRVTAFLQTPAVGFSLPNLRSLLRRAPWVLVYDIGSEMIPAISYLKRVLDLPNRAPVDQFIRARP--LLLGTSPDAMQKVTDFMSDVVGLTPTMLSVALRSFP-PLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGIINVGRIVKRLPPILGYDLDTNIIPKMEYIEQELGLSSYDILTFPGYFSYSFEKCIEPRTKFLQAKGRSVTESGLNMALGLK--DEDFCVRVAKVPISQYYAFKAAFLLGRKNEKAA 472 The following BLAST results are available for this feature:
BLAST of NO12G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G01880 ID=NO12G01880|Name=NO12G01880|organism=Nannochloropsis oceanica|type=gene|length=1983bpback to top protein sequence of NO12G01880.1 >NO12G01880.1-protein ID=NO12G01880.1-protein|Name=NO12G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bpback to top Synonyms
Publications
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