NO12G01840, NO12G01840 (gene) Nannochloropsis oceanica

Overview
NameNO12G01840
Unique NameNO12G01840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1356
Alignment locationchr12:531483..532838 +

Link to JBrowse

Properties
Property NameValue
Descriptionsequence-specific DNA binding transcription factors;DNA binding;DNA binding
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:531483..532838 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006338chromatin remodeling
GO:0043486histone exchange
GO:0006355regulation of transcription, DNA-templated
GO:0043486histone exchange
GO:0006355regulation of transcription, DNA-templated
GO:0006338chromatin remodeling
Vocabulary: INTERPRO
TermDefinition
IPR008895Vps72/YL1
IPR013272Vps72/YL1_C
Homology
BLAST of NO12G01840 vs. NCBI_GenBank
Match: CBJ28847.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 98.6 bits (244), Expect = 5.300e-17
Identity = 55/164 (33.54%), Postives = 93/164 (56.71%), Query Frame = 0
Query:  240 QKTVATQEALAKMGKEEARKHVVKAPRVSKCMFTQEEMLAEACKTEQENTRWLLARKRMQNESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAIL-------KGGEGGKEERRKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLR 397
            +K++  +E  AK  + + ++   +  +  K  FTQ+++L EA +TEQEN RW+L ++R+++E+      PK+   L +R+ SRRG    I FP+   +P +L        GG+G  +++     ++    ++ R+C ITG PA Y DPLT   YAN  AF+ +R
Sbjct:  165 EKSLEVREGEAKAREAQLKRSTPQRKKAIKGQFTQKQLLLEAIQTEQENMRWILKQRRLEDEAKEDEGRPKQHKILASRYASRRGCVDTIFFPDAYYLPPVLCQAPFSAGGGDGADQDK----GSKTAKSSSDRRCKITGAPAPYRDPLTGYYYANGAAFREVR 324          
BLAST of NO12G01840 vs. NCBI_GenBank
Match: XP_005856108.1 (dna binding protein [Nannochloropsis gaditana CCMP526] >EKU20244.1 dna binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 91.3 bits (225), Expect = 8.400e-15
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0
Query:   69 VPLEASLAFGREKRATMGKRMGGLVGEELDKDETFWGDGKWNIDDAESEYSN 121
            V L+ SLAFGREKR TMGKRMG LVGEELDKDETFW D KW +DDAESEYSN
Sbjct:   69 VLLQDSLAFGREKRVTMGKRMGNLVGEELDKDETFWEDSKWKVDDAESEYSN 120          
BLAST of NO12G01840 vs. NCBI_GenBank
Match: XP_002178637.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50302.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 89.7 bits (221), Expect = 2.400e-14
Identity = 60/147 (40.82%), Postives = 81/147 (55.10%), Query Frame = 0
Query:  266 RVSKCMFTQEEMLAEAC-KTEQENTRWLLARKRMQNESDTTA----HAPKRQVKLVARFISRRGGYTVINFPEVDLMPAILKGGEGGKEERRKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLR---ADSQYMPQ 405
            R  K  FTQEE+L EA  +TE EN RWLL+R+R+Q++ D  A     + +R  +++  ++SRRG    I FPE+D +P IL        E R R+ T          CV+TG  A+Y DPLT   Y+N  AFK LR   A  +  PQ
Sbjct:  215 RQPKHNFTQEELLLEAALETEPENHRWLLSRQRIQDQQDRDAGPNDRSHRRGGRVIESYVSRRGAPNTITFPEMDYVPEILTQSSSAMLE-RLRIPT---------FCVVTGERAKYKDPLTGLEYSNAAAFKELRRRHASGELKPQ 351          
BLAST of NO12G01840 vs. NCBI_GenBank
Match: OEU18603.1 (hypothetical protein FRACYDRAFT_260466 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 76.6 bits (187), Expect = 2.100e-10
Identity = 51/136 (37.50%), Postives = 65/136 (47.79%), Query Frame = 0
Query:  283 KTEQENTRWLLARKRMQNESDTTAHAPK------RQVKLVARFISRRGGYTVINFPEVDLMPAIL---------KGGEGGKEERRKRLRTEDGS-------GTNIRKCVITGLPARYLDPLTRQPYANREAFKSLR 397
            +TE EN RWL  RKR Q++ D             R  K++ +F SRRG    + FPE+D +P IL            E   E R   + +   +       G+NI  CVITG P RY DP+T  PY N  AFK LR
Sbjct:  309 ETEPENQRWLFGRKRTQDQHDKDKDLNSGFRDKYRGRKVIQKFHSRRGCLNTLTFPEMDAVPEILTRRQPQXXXXXXEKNLESRPSNVASSSSAEPSQQQVGSNI--CVITGRPGRYKDPITNLPYHNLAAFKELR 442          
BLAST of NO12G01840 vs. NCBI_GenBank
Match: EJK69384.1 (hypothetical protein THAOC_09369 [Thalassiosira oceanica])

HSP 1 Score: 73.2 bits (178), Expect = 2.400e-9
Identity = 56/151 (37.09%), Postives = 77/151 (50.99%), Query Frame = 0
Query:  266 RVSKCMFTQEEMLAEACK-TEQENTRWLLARKRMQNESD------TTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAIL-KGGEGG---KEERRKRLRTEDGSGTN---IRK-----CVITGLPARYLDPLTRQPYANREAFKSLRA 398
            R  K  FTQE+M+ E+ K TE +N +WL +RKR ++E+        T        K V+RF SRRG    + F ++D +P IL K G GG   K   R R   +D   T    +R      CVITG  A+Y DP T   Y + E+F  L++
Sbjct:  284 RTIKRHFTQEQMILESIKTTEPDNNKWLSSRKRGKDEAAQFEKALVTGRGRSSNQKPVSRFHSRRGCTNTLTFMDMDRLPEILTKQGSGGLVKKSGSRTRKSEKDSQQTESVAVRTEGPLLCVITGKVAKYRDPKTLLGYHDLESFNELKS 434          
BLAST of NO12G01840 vs. NCBI_GenBank
Match: XP_002674669.1 (predicted protein [Naegleria gruberi] >EFC41925.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 71.6 bits (174), Expect = 6.900e-9
Identity = 52/130 (40.00%), Postives = 71/130 (54.62%), Query Frame = 0
Query:  273 TQEEMLAEACKTEQENTRWLLARKRMQNESDTTAHAPKRQVKLV------ARFISRRGGYTVINFPEVDLMPAILKGGEGGKEERRKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLR 397
            TQEE+L EA  T +EN + LL  K  Q E D    A   + K++       ++IS+  G  +I F    + P  +      +E +R  +  E+       KCVITGLPA+Y+DPLTR+PYAN EAFK LR
Sbjct:  188 TQEELLEEAKITTEENKKSLL--KLRQTEEDVKKKARDSKSKMIDPYEPRVKYISKM-GTNLIEFVNHGI-PQCINQKMPDEEVKRFNIPKEEKQ----LKCVITGLPAKYIDPLTRKPYANVEAFKELR 309          
BLAST of NO12G01840 vs. NCBI_GenBank
Match: GAX20813.1 (hypothetical protein FisN_7Hh126 [Fistulifera solaris])

HSP 1 Score: 71.6 bits (174), Expect = 6.900e-9
Identity = 51/127 (40.16%), Postives = 59/127 (46.46%), Query Frame = 0
Query:  281 ACKTEQENTRWLLARKRMQ-----NESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAILKGGEGGKEERRKRLRTEDGSGTNIRK---CVITGLPARYLDPLTRQPYANREAFKSLRADS 400
            A +TE EN RWLLARKR Q     NE            KL+ ++ SRRG    I FPE+D +P I              L  +D   T   K   CVITG  ARY DP T   Y +  AFK LR  S
Sbjct:  243 AHETEGENIRWLLARKRYQEEQKDNEGRMEGRGRGPAGKLIMQYTSRRGYLNTITFPEMDHVPEI--------------LTRQDSQATKYPKPTYCVITGQKARYKDPRTGLGYYDLAAFKELRRRS 355          
BLAST of NO12G01840 vs. NCBI_GenBank
Match: GAX11746.1 (hypothetical protein FisN_7Lh126 [Fistulifera solaris])

HSP 1 Score: 71.2 bits (173), Expect = 9.000e-9
Identity = 52/124 (41.94%), Postives = 61/124 (49.19%), Query Frame = 0
Query:  281 ACKTEQENTRWLLARKRMQ-----NESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAILKGGEGGKEERRKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLRADS 400
            A +TE E+ RWLLARKR Q     NE            KL+ ++ SRRG    I FPE+D +P IL         RR    T+    T    CVITGL ARY DP T   Y +  AFK LR  S
Sbjct:  246 AHETEGESIRWLLARKRYQEEQKDNEGRMEGRGRGPTGKLIMQYTSRRGYLNTITFPEMDHVPEIL--------TRRDSQTTKYPKPT---YCVITGLKARYKDPRTGLGYYDLAAFKELRRRS 358          
BLAST of NO12G01840 vs. NCBI_GenBank
Match: XP_023161644.1 (vacuolar protein sorting-associated protein 72 homolog [Drosophila hydei])

HSP 1 Score: 67.0 bits (162), Expect = 1.700e-7
Identity = 64/182 (35.16%), Postives = 88/182 (48.35%), Query Frame = 0
Query:  241 KTVATQEALAKMGKEEARKHVVKAPRVSKCMFTQEEMLAEACKTEQENTRWLLARKRMQNESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMP--AILKGGEGGKEER------------------RKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLRADSQYM 403
            KT AT+  L ++  ++ARK   K  RV   M TQEE+LAEA  TE+EN + L   ++M+ E   T   P ++V     FI     Y  +  P +  MP  A       G+ ER                  R +   +  SG     C IT LPARY DP+T+QPY + +AFK LR ++ YM
Sbjct:  140 KTQATKIRLKEL--DDARKRKKKKVRVEDYMPTQEELLAEAKLTEEENIKSLEKFQKMELEKKKT--RPTKRV-----FIGPTIRYHSLTMPVIRNMPTRAAQPNDSTGRCERTFVTFENDFNDKAFNAIFRPKRAPKHSSGI----CPITRLPARYFDPVTQQPYYSIQAFKILR-EAYYM 307          
BLAST of NO12G01840 vs. NCBI_GenBank
Match: XP_001632443.1 (predicted protein [Nematostella vectensis] >EDO40380.1 predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 65.5 bits (158), Expect = 4.900e-7
Identity = 49/151 (32.45%), Postives = 69/151 (45.70%), Query Frame = 0
Query:  273 TQEEMLAEACKTEQENTRWLLARKRMQNESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAILKGGEGGKEERRKRLRTEDGSGTNIRK---------------------------CVITGLPARYLDPLTRQPYANREAFKSLR 397
            TQEE+LAEA  TE+ENT  LLA +R + +   T          + RF S       ++ P +D+   I+   E  KEE  +  +  D +    R                            C +TGLPARYLDP+T+ PYAN +AF+ +R
Sbjct:    5 TQEELLAEARITEEENTASLLAYQRHEADKKKTKIQKVTHKGPIIRFCS-------LSMPVIDMNEPIVHVDEIDKEEETQTKQNIDPTKRCCRNFMIFTDAKNFPDAYFPTKKPKYPQRTYCPVTGLPARYLDPITQLPYANAQAFRYIR 148          
The following BLAST results are available for this feature:
BLAST of NO12G01840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
CBJ28847.15.300e-1733.54conserved unknown protein [Ectocarpus siliculosus][more]
XP_005856108.18.400e-1582.69dna binding protein [Nannochloropsis gaditana CCMP... [more]
XP_002178637.12.400e-1440.82predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU18603.12.100e-1037.50hypothetical protein FRACYDRAFT_260466 [Fragilario... [more]
EJK69384.12.400e-937.09hypothetical protein THAOC_09369 [Thalassiosira oc... [more]
XP_002674669.16.900e-940.00predicted protein [Naegleria gruberi] >EFC41925.1 ... [more]
GAX20813.16.900e-940.16hypothetical protein FisN_7Hh126 [Fistulifera sola... [more]
GAX11746.19.000e-941.94hypothetical protein FisN_7Lh126 [Fistulifera sola... [more]
XP_023161644.11.700e-735.16vacuolar protein sorting-associated protein 72 hom... [more]
XP_001632443.14.900e-732.45predicted protein [Nematostella vectensis] >EDO403... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010106NSK010106Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01840.1NO12G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592195gene_5340Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01840.1NO12G01840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01840 ID=NO12G01840|Name=NO12G01840|organism=Nannochloropsis oceanica|type=gene|length=1356bp
ATGGCGCGGGCCACAAGGGCCAGTCTGGGTATAAACTCGGATGTTGACGT
GGAAGGCCTGAATGGAGATGGGGAAGAAGTTGAGGAGGAAGGGGACAGTG
AAGGGGAAGAGAATGGCAGCGAGGAGGACGACGATGCTGATGACGACGAG
GAGGAGGAAGATGACGACGACTATGAGGAAGAAGACAACGAGGAGGACAA
TCAGGTACCGCTAGAAGCAAGCTTGGCGTTCGGGCGTGAAAAACGTGCCA
CGATGGGGAAGCGGATGGGGGGCCTAGTTGGGGAGGAGCTGGATAAGGAC
GAGACGTTTTGGGGTGACGGGAAGTGGAATATTGATGATGCCGAGTCGGA
GTACTCAAATGAATCCGAATCAGGTGATGAAGTGGACTCGGATTTCTCGG
TCAGCGAGGACGAGGCGGGGGCAGAAGGGGAGGACAAGGAGGACGAGGAA
GCGGAACGCAACCTGACCGCGCGGGAAAAGCGTCAGCAGCAGCAAGAGAT
CGGGGCCCGAAGCAAGTACAAGGAACCCAAGCGCAAAGCTCGCCTACCGC
CCAGGATTGCTGCTCTTGGGGCTGCGGCTGCGGAGGCGGCCTTGCTTTCC
AGCATGACCCCGGAGGAGGTAAAGAAGCTGAAGGAGGAACGGAAGGAGGC
CACGCGTCGCCGGCGGGAAGCAGCCTTGCTGGTTCCCGTAGACCGAGCGA
AACGTGCGACGACTCAGCAGAAAACAGTGGCAACACAAGAGGCTTTGGCC
AAGATGGGGAAGGAAGAAGCGAGGAAACACGTTGTGAAAGCACCAAGGGT
GAGTAAGTGTATGTTTACCCAGGAGGAAATGCTGGCCGAGGCGTGTAAGA
CCGAGCAGGAGAATACCCGATGGCTGCTTGCGAGGAAGAGGATGCAAAAC
GAAAGCGACACCACGGCGCATGCTCCCAAAAGGCAAGTCAAGCTGGTTGC
ACGCTTCATCTCAAGGAGGGGAGGATATACCGTAATAAACTTTCCAGAAG
TGGACCTGATGCCGGCGATTTTGAAAGGGGGGGAAGGAGGGAAGGAGGAG
AGACGGAAGCGATTGAGGACAGAGGACGGGAGTGGGACAAATATCAGAAA
GTGTGTGATTACGGGATTGCCTGCCCGGTATCTTGATCCTCTCACCAGAC
AGCCATATGCGAATCGGGAGGCGTTCAAGTCGTTAAGGGCCGATTCGCAA
TATATGCCCCAGGAAGAGGACGAGGGAGAGGGCGAGGACGAAGACGAGGA
TGAAGGGATGGGGGTGCCGGCTGATGATGAGGAGGGAGGGGTGAAGGAAG
AGTTGAGAAAGGGGTCGTCGATGAGTTCGTCTCTAACGAATGAATCTTTT
GGGTAG
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protein sequence of NO12G01840.1

>NO12G01840.1-protein ID=NO12G01840.1-protein|Name=NO12G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MARATRASLGINSDVDVEGLNGDGEEVEEEGDSEGEENGSEEDDDADDDE
EEEDDDDYEEEDNEEDNQVPLEASLAFGREKRATMGKRMGGLVGEELDKD
ETFWGDGKWNIDDAESEYSNESESGDEVDSDFSVSEDEAGAEGEDKEDEE
AERNLTAREKRQQQQEIGARSKYKEPKRKARLPPRIAALGAAAAEAALLS
SMTPEEVKKLKEERKEATRRRREAALLVPVDRAKRATTQQKTVATQEALA
KMGKEEARKHVVKAPRVSKCMFTQEEMLAEACKTEQENTRWLLARKRMQN
ESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAILKGGEGGKEE
RRKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLRADSQ
YMPQEEDEGEGEDEDEDEGMGVPADDEEGGVKEELRKGSSMSSSLTNESF
G*
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Synonyms
Publications