NO12G01840, NO12G01840 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G01840 vs. NCBI_GenBank
Match: CBJ28847.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 98.6 bits (244), Expect = 5.300e-17 Identity = 55/164 (33.54%), Postives = 93/164 (56.71%), Query Frame = 0 Query: 240 QKTVATQEALAKMGKEEARKHVVKAPRVSKCMFTQEEMLAEACKTEQENTRWLLARKRMQNESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAIL-------KGGEGGKEERRKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLR 397 +K++ +E AK + + ++ + + K FTQ+++L EA +TEQEN RW+L ++R+++E+ PK+ L +R+ SRRG I FP+ +P +L GG+G +++ ++ ++ R+C ITG PA Y DPLT YAN AF+ +R Sbjct: 165 EKSLEVREGEAKAREAQLKRSTPQRKKAIKGQFTQKQLLLEAIQTEQENMRWILKQRRLEDEAKEDEGRPKQHKILASRYASRRGCVDTIFFPDAYYLPPVLCQAPFSAGGGDGADQDK----GSKTAKSSSDRRCKITGAPAPYRDPLTGYYYANGAAFREVR 324
BLAST of NO12G01840 vs. NCBI_GenBank
Match: XP_005856108.1 (dna binding protein [Nannochloropsis gaditana CCMP526] >EKU20244.1 dna binding protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 91.3 bits (225), Expect = 8.400e-15 Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0 Query: 69 VPLEASLAFGREKRATMGKRMGGLVGEELDKDETFWGDGKWNIDDAESEYSN 121 V L+ SLAFGREKR TMGKRMG LVGEELDKDETFW D KW +DDAESEYSN Sbjct: 69 VLLQDSLAFGREKRVTMGKRMGNLVGEELDKDETFWEDSKWKVDDAESEYSN 120
BLAST of NO12G01840 vs. NCBI_GenBank
Match: XP_002178637.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50302.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 89.7 bits (221), Expect = 2.400e-14 Identity = 60/147 (40.82%), Postives = 81/147 (55.10%), Query Frame = 0 Query: 266 RVSKCMFTQEEMLAEAC-KTEQENTRWLLARKRMQNESDTTA----HAPKRQVKLVARFISRRGGYTVINFPEVDLMPAILKGGEGGKEERRKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLR---ADSQYMPQ 405 R K FTQEE+L EA +TE EN RWLL+R+R+Q++ D A + +R +++ ++SRRG I FPE+D +P IL E R R+ T CV+TG A+Y DPLT Y+N AFK LR A + PQ Sbjct: 215 RQPKHNFTQEELLLEAALETEPENHRWLLSRQRIQDQQDRDAGPNDRSHRRGGRVIESYVSRRGAPNTITFPEMDYVPEILTQSSSAMLE-RLRIPT---------FCVVTGERAKYKDPLTGLEYSNAAAFKELRRRHASGELKPQ 351
BLAST of NO12G01840 vs. NCBI_GenBank
Match: OEU18603.1 (hypothetical protein FRACYDRAFT_260466 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 76.6 bits (187), Expect = 2.100e-10 Identity = 51/136 (37.50%), Postives = 65/136 (47.79%), Query Frame = 0 Query: 283 KTEQENTRWLLARKRMQNESDTTAHAPK------RQVKLVARFISRRGGYTVINFPEVDLMPAIL---------KGGEGGKEERRKRLRTEDGS-------GTNIRKCVITGLPARYLDPLTRQPYANREAFKSLR 397 +TE EN RWL RKR Q++ D R K++ +F SRRG + FPE+D +P IL E E R + + + G+NI CVITG P RY DP+T PY N AFK LR Sbjct: 309 ETEPENQRWLFGRKRTQDQHDKDKDLNSGFRDKYRGRKVIQKFHSRRGCLNTLTFPEMDAVPEILTRRQPQXXXXXXEKNLESRPSNVASSSSAEPSQQQVGSNI--CVITGRPGRYKDPITNLPYHNLAAFKELR 442
BLAST of NO12G01840 vs. NCBI_GenBank
Match: EJK69384.1 (hypothetical protein THAOC_09369 [Thalassiosira oceanica]) HSP 1 Score: 73.2 bits (178), Expect = 2.400e-9 Identity = 56/151 (37.09%), Postives = 77/151 (50.99%), Query Frame = 0 Query: 266 RVSKCMFTQEEMLAEACK-TEQENTRWLLARKRMQNESD------TTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAIL-KGGEGG---KEERRKRLRTEDGSGTN---IRK-----CVITGLPARYLDPLTRQPYANREAFKSLRA 398 R K FTQE+M+ E+ K TE +N +WL +RKR ++E+ T K V+RF SRRG + F ++D +P IL K G GG K R R +D T +R CVITG A+Y DP T Y + E+F L++ Sbjct: 284 RTIKRHFTQEQMILESIKTTEPDNNKWLSSRKRGKDEAAQFEKALVTGRGRSSNQKPVSRFHSRRGCTNTLTFMDMDRLPEILTKQGSGGLVKKSGSRTRKSEKDSQQTESVAVRTEGPLLCVITGKVAKYRDPKTLLGYHDLESFNELKS 434
BLAST of NO12G01840 vs. NCBI_GenBank
Match: XP_002674669.1 (predicted protein [Naegleria gruberi] >EFC41925.1 predicted protein [Naegleria gruberi]) HSP 1 Score: 71.6 bits (174), Expect = 6.900e-9 Identity = 52/130 (40.00%), Postives = 71/130 (54.62%), Query Frame = 0 Query: 273 TQEEMLAEACKTEQENTRWLLARKRMQNESDTTAHAPKRQVKLV------ARFISRRGGYTVINFPEVDLMPAILKGGEGGKEERRKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLR 397 TQEE+L EA T +EN + LL K Q E D A + K++ ++IS+ G +I F + P + +E +R + E+ KCVITGLPA+Y+DPLTR+PYAN EAFK LR Sbjct: 188 TQEELLEEAKITTEENKKSLL--KLRQTEEDVKKKARDSKSKMIDPYEPRVKYISKM-GTNLIEFVNHGI-PQCINQKMPDEEVKRFNIPKEEKQ----LKCVITGLPAKYIDPLTRKPYANVEAFKELR 309
BLAST of NO12G01840 vs. NCBI_GenBank
Match: GAX20813.1 (hypothetical protein FisN_7Hh126 [Fistulifera solaris]) HSP 1 Score: 71.6 bits (174), Expect = 6.900e-9 Identity = 51/127 (40.16%), Postives = 59/127 (46.46%), Query Frame = 0 Query: 281 ACKTEQENTRWLLARKRMQ-----NESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAILKGGEGGKEERRKRLRTEDGSGTNIRK---CVITGLPARYLDPLTRQPYANREAFKSLRADS 400 A +TE EN RWLLARKR Q NE KL+ ++ SRRG I FPE+D +P I L +D T K CVITG ARY DP T Y + AFK LR S Sbjct: 243 AHETEGENIRWLLARKRYQEEQKDNEGRMEGRGRGPAGKLIMQYTSRRGYLNTITFPEMDHVPEI--------------LTRQDSQATKYPKPTYCVITGQKARYKDPRTGLGYYDLAAFKELRRRS 355
BLAST of NO12G01840 vs. NCBI_GenBank
Match: GAX11746.1 (hypothetical protein FisN_7Lh126 [Fistulifera solaris]) HSP 1 Score: 71.2 bits (173), Expect = 9.000e-9 Identity = 52/124 (41.94%), Postives = 61/124 (49.19%), Query Frame = 0 Query: 281 ACKTEQENTRWLLARKRMQ-----NESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAILKGGEGGKEERRKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLRADS 400 A +TE E+ RWLLARKR Q NE KL+ ++ SRRG I FPE+D +P IL RR T+ T CVITGL ARY DP T Y + AFK LR S Sbjct: 246 AHETEGESIRWLLARKRYQEEQKDNEGRMEGRGRGPTGKLIMQYTSRRGYLNTITFPEMDHVPEIL--------TRRDSQTTKYPKPT---YCVITGLKARYKDPRTGLGYYDLAAFKELRRRS 358
BLAST of NO12G01840 vs. NCBI_GenBank
Match: XP_023161644.1 (vacuolar protein sorting-associated protein 72 homolog [Drosophila hydei]) HSP 1 Score: 67.0 bits (162), Expect = 1.700e-7 Identity = 64/182 (35.16%), Postives = 88/182 (48.35%), Query Frame = 0 Query: 241 KTVATQEALAKMGKEEARKHVVKAPRVSKCMFTQEEMLAEACKTEQENTRWLLARKRMQNESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMP--AILKGGEGGKEER------------------RKRLRTEDGSGTNIRKCVITGLPARYLDPLTRQPYANREAFKSLRADSQYM 403 KT AT+ L ++ ++ARK K RV M TQEE+LAEA TE+EN + L ++M+ E T P ++V FI Y + P + MP A G+ ER R + + SG C IT LPARY DP+T+QPY + +AFK LR ++ YM Sbjct: 140 KTQATKIRLKEL--DDARKRKKKKVRVEDYMPTQEELLAEAKLTEEENIKSLEKFQKMELEKKKT--RPTKRV-----FIGPTIRYHSLTMPVIRNMPTRAAQPNDSTGRCERTFVTFENDFNDKAFNAIFRPKRAPKHSSGI----CPITRLPARYFDPVTQQPYYSIQAFKILR-EAYYM 307
BLAST of NO12G01840 vs. NCBI_GenBank
Match: XP_001632443.1 (predicted protein [Nematostella vectensis] >EDO40380.1 predicted protein, partial [Nematostella vectensis]) HSP 1 Score: 65.5 bits (158), Expect = 4.900e-7 Identity = 49/151 (32.45%), Postives = 69/151 (45.70%), Query Frame = 0 Query: 273 TQEEMLAEACKTEQENTRWLLARKRMQNESDTTAHAPKRQVKLVARFISRRGGYTVINFPEVDLMPAILKGGEGGKEERRKRLRTEDGSGTNIRK---------------------------CVITGLPARYLDPLTRQPYANREAFKSLR 397 TQEE+LAEA TE+ENT LLA +R + + T + RF S ++ P +D+ I+ E KEE + + D + R C +TGLPARYLDP+T+ PYAN +AF+ +R Sbjct: 5 TQEELLAEARITEEENTASLLAYQRHEADKKKTKIQKVTHKGPIIRFCS-------LSMPVIDMNEPIVHVDEIDKEEETQTKQNIDPTKRCCRNFMIFTDAKNFPDAYFPTKKPKYPQRTYCPVTGLPARYLDPITQLPYANAQAFRYIR 148 The following BLAST results are available for this feature:
BLAST of NO12G01840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 11
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G01840 ID=NO12G01840|Name=NO12G01840|organism=Nannochloropsis oceanica|type=gene|length=1356bpback to top protein sequence of NO12G01840.1 >NO12G01840.1-protein ID=NO12G01840.1-protein|Name=NO12G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bpback to top Synonyms
Publications
|