NO12G01770, NO12G01770 (gene) Nannochloropsis oceanica

Overview
NameNO12G01770
Unique NameNO12G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length420
Alignment locationchr12:521204..521623 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:521204..521623 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO12G01770 vs. NCBI_GenBank
Match: EWM25861.1 (hypothetical protein Naga_100054g36 [Nannochloropsis gaditana])

HSP 1 Score: 226.1 bits (575), Expect = 6.800e-56
Identity = 111/139 (79.86%), Postives = 125/139 (89.93%), Query Frame = 0 
Query:    1 MTSDWGMSVLKFGLASVVLTLFASMGSQPSYNFPIALLSIFVPHLPKPFLTSLLFVLLPISVLLDIIWASLYGPYLGSGAPLLALILMVLNLFLKLPWAYVAFELMNETGGSPIVLLTPELAIGGAGLGDASHERITDI 140
            M  DWGM+VLK  L SV LTL ASMGSQPSYNFPIALL ++VPH+PKPFLTSLLFVLLP+++LLDI+WASLYGPYL SGAPLLALIL VLNLFLK+PW+Y A+ELMNETGG+P+VL+ PELAIGGAGLGD SHERI DI
Sbjct:    1 MAGDWGMTVLKLSLLSVALTLLASMGSQPSYNFPIALLGVWVPHIPKPFLTSLLFVLLPVAMLLDILWASLYGPYLNSGAPLLALILTVLNLFLKVPWSYAAWELMNETGGNPMVLINPELAIGGAGLGDGSHERINDI 139
The following BLAST results are available for this feature:
BLAST of NO12G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25861.16.800e-5679.86hypothetical protein Naga_100054g36 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010101NSK010101Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01770.1NO12G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592177gene_5335Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100054g36gene4661Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01770.1NO12G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01770 ID=NO12G01770|Name=NO12G01770|organism=Nannochloropsis oceanica|type=gene|length=420bp
ATGACGAGCGACTGGGGCATGTCCGTGCTTAAGTTCGGCCTGGCCAGCGT
CGTCCTCACCCTATTTGCCAGCATGGGGTCTCAGCCATCATATAACTTTC
CCATTGCTTTGCTGAGTATTTTTGTACCCCATCTTCCCAAGCCCTTCTTG
ACCTCCTTGCTCTTTGTCCTTCTGCCCATCAGTGTACTGCTGGATATCAT
CTGGGCATCTCTCTATGGCCCCTACCTCGGCAGCGGTGCCCCCCTGCTCG
CGTTGATTTTGATGGTCCTAAACCTTTTCCTAAAGCTTCCATGGGCATAC
GTAGCTTTTGAGCTGATGAACGAGACAGGGGGGAGCCCTATCGTTCTGCT
CACACCGGAGCTGGCCATTGGAGGCGCGGGGTTGGGGGACGCATCGCATG
AGCGTATTACTGACATCTGA
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protein sequence of NO12G01770.1

>NO12G01770.1-protein ID=NO12G01770.1-protein|Name=NO12G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MTSDWGMSVLKFGLASVVLTLFASMGSQPSYNFPIALLSIFVPHLPKPFL
TSLLFVLLPISVLLDIIWASLYGPYLGSGAPLLALILMVLNLFLKLPWAY
VAFELMNETGGSPIVLLTPELAIGGAGLGDASHERITDI*
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Synonyms
Publications