NO12G01740, NO12G01740 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G01740 vs. NCBI_GenBank
Match: XP_005856100.1 (hypothetical protein NGA_0332000 [Nannochloropsis gaditana CCMP526] >EKU20236.1 hypothetical protein NGA_0332000 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 209.1 bits (531), Expect = 1.400e-50 Identity = 92/126 (73.02%), Postives = 110/126 (87.30%), Query Frame = 0 Query: 97 RFVRRKPGVAAPSQAAEIDFGKVTGALFDRVEAGVAGMQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCPQI 223 RFVRRKPG AP + ++DFG+ TGALFDR+E GVAGMQELND F++NRQ++ ELV+DLGPGKGAFTLQRDWA NQLVY+SPVSGCNKY Y+ RWLS+A+D+HDL GI+TRDLIRMCVGCP++ Sbjct: 80 RFVRRKPGQVAP-ETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL 204
BLAST of NO12G01740 vs. NCBI_GenBank
Match: EWM25875.1 (hypothetical protein Naga_100054g32 [Nannochloropsis gaditana]) HSP 1 Score: 194.9 bits (494), Expect = 2.700e-46 Identity = 85/119 (71.43%), Postives = 103/119 (86.55%), Query Frame = 0 Query: 104 GVAAPSQAAEIDFGKVTGALFDRVEAGVAGMQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCPQI 223 G AP + ++DFG+ TGALFDR+E GVAGMQELND F++NRQ++ ELV+DLGPGKGAFTLQRDWA NQLVY+SPVSGCNKY Y+ RWLS+A+D+HDL GI+TRDLIRMCVGCP++ Sbjct: 49 GQVAP-ETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL 166
BLAST of NO12G01740 vs. NCBI_GenBank
Match: CBJ30485.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 80.5 bits (197), Expect = 7.400e-12 Identity = 42/124 (33.87%), Postives = 71/124 (57.26%), Query Frame = 0 Query: 105 VAAPSQAAEIDFGKVTGALF--------DRVEAGVAGMQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221 ++A +Q A +FG+++ D+VE + M+ ND F + R++ E+ +LGP G + ++ D + Q+ MSP SG ++Y +D G GRW+ A D+HD G++TRD+I+ G P Sbjct: 112 MSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEV-RREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEA-DKHDFQGMLTRDIIQSACGIP 233
BLAST of NO12G01740 vs. NCBI_GenBank
Match: GBG25447.1 (Hypothetical Protein FCC1311_016652 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 66.2 bits (160), Expect = 1.400e-7 Identity = 36/116 (31.03%), Postives = 55/116 (47.41%), Query Frame = 0 Query: 105 VAAPSQAAEIDFGKVTGALFDRVEAGVAGMQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221 VA S DF ++V G + +Q N +N + E+ + L F +Q D+ +N+L+++SP SG Y D GRW D H G++TRD++R C G P Sbjct: 22 VADRSAVLGEDFRAGAKDALEKVRRGFSELQADNPSLQLNSPSDWEIEVHLANTDNRFLVQIDFDKNELIFVSPESGGRTYFLDAESGRWRD-RTDGHGFDGLLTRDVMRHCYGVP 136
BLAST of NO12G01740 vs. NCBI_GenBank
Match: GAX95870.1 (Hypothetical protein PINS_003744 [Pythium insidiosum]) HSP 1 Score: 65.9 bits (159), Expect = 1.900e-7 Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 0 Query: 116 FGKVTGALFDRVEAGVAG-MQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221 F +T FDRV+A VA + N F ++R L+L + F L+ + QL SP+SG KY ++ RW D HDL G++TRDL+R+C G P Sbjct: 6 FDSLTTEFFDRVDAAVAPLLPPANAVFEVDRSTPGMLLLRTATKE--FELKIINNKQQLHLQSPISGLRKYEWNAKTXRW-EDETDAHDLEGLLTRDLMRLCTGIP 108
BLAST of NO12G01740 vs. NCBI_GenBank
Match: ETI52035.1 (hypothetical protein F443_04751, partial [Phytophthora parasitica P1569] >ETM51625.1 hypothetical protein L914_04587, partial [Phytophthora parasitica]) HSP 1 Score: 64.3 bits (155), Expect = 5.500e-7 Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 0 Query: 116 FGKVTGALFDRVEAGVAGMQ-ELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221 F ++ DRV+A V + +ND F + R ELV+ + F ++ ++ Q+ ++SPVSG Y ++ RW D HD+ G++TRDL+R C G P Sbjct: 27 FTTLSTEFLDRVQAAVEPLHPPINDDFQLQRDGNGELVIRTNSKE--FVIKVLSSKQQIEFLSPVSGLRTYQWNLMTKRWEDETDS-HDIEGLLTRDLMRFCAGIP 129
BLAST of NO12G01740 vs. NCBI_GenBank
Match: XP_008902115.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETK91880.1 hypothetical protein, variant [Phytophthora parasitica] >ETL98461.1 hypothetical protein, variant [Phytophthora parasitica] >ETN12099.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO80766.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP49685.1 hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 64.3 bits (155), Expect = 5.500e-7 Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 0 Query: 116 FGKVTGALFDRVEAGVAGMQ-ELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221 F ++ DRV+A V + +ND F + R ELV+ + F ++ ++ Q+ ++SPVSG Y ++ RW D HD+ G++TRDL+R C G P Sbjct: 48 FTTLSTEFLDRVQAAVEPLHPPINDDFQLQRDGNGELVIRTNSKE--FVIKVLSSKQQIEFLSPVSGLRTYQWNLMTKRWEDETDS-HDIEGLLTRDLMRFCAGIP 150
BLAST of NO12G01740 vs. NCBI_GenBank
Match: KUF64492.1 (hypothetical protein AM587_10017222 [Phytophthora nicotianae]) HSP 1 Score: 64.3 bits (155), Expect = 5.500e-7 Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 0 Query: 116 FGKVTGALFDRVEAGVAGMQ-ELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221 F ++ DRV+A V + +ND F + R ELV+ + F ++ ++ Q+ ++SPVSG Y ++ RW D HD+ G++TRDL+R C G P Sbjct: 315 FTTLSTEFLDRVQAAVEPLHPPINDDFQLQRDGNGELVIRTNSKE--FVIKVLSSKQQIEFLSPVSGLRTYQWNLMTKRWEDETDS-HDIEGLLTRDLMRFCAGIP 417 The following BLAST results are available for this feature:
BLAST of NO12G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 8
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G01740 ID=NO12G01740|Name=NO12G01740|organism=Nannochloropsis oceanica|type=gene|length=672bpback to top protein sequence of NO12G01740.1 >NO12G01740.1-protein ID=NO12G01740.1-protein|Name=NO12G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bpback to top Synonyms
Publications
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