NO12G01670, NO12G01670 (gene) Nannochloropsis oceanica

Overview
NameNO12G01670
Unique NameNO12G01670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length864
Alignment locationchr12:500784..501647 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:500784..501647 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011051RmlC_Cupin
Homology
BLAST of NO12G01670 vs. NCBI_GenBank
Match: EWM25883.1 (hypothetical protein Naga_100054g26 [Nannochloropsis gaditana])

HSP 1 Score: 287.3 bits (734), Expect = 5.100e-74
Identity = 124/211 (58.77%), Postives = 157/211 (74.41%), Query Frame = 0
Query:   72 LVKHDGPMVCVNRGEAPFPEQGFDFFASIQGLETARHFLCQDKEAYSEYWLKEARARFQERKAEREWNAFLRNDGTCGGRRLYWAVMQLPPGRSFNLHVHPCLEVIHVIRGRLHERRMIGPPLSLIEEEGKLVEEMKPVDLSRMVPPPQFRDGVFLEGSLNANEMGSVHQSWTDGGEGCLLMCIWGGGHCNIEGRRLPEGFRMGGCCGQTM 283
            +V+HDGP+VC++RG++  PEQG+DF     G +     L   KE Y   WL+E R RFQER+ E+ W  FL N G CGGR  YWA++Q+P  RSF+LHVHPC EV+HV+RGRL+ERRM+GPPLSL EEEGK V EM PVDLS + PPP FRDGVF E ++N NEMGSVHQSWT G EGC+++ +W GGHC I+G  LP+G+  GGCC +++
Sbjct:   31 VVRHDGPLVCIDRGQSALPEQGYDFLMETLGCDLGSELLGSSKEEYGARWLREVRLRFQERRYEKTWETFLENGGKCGGRCTYWAILQVPSDRSFDLHVHPCFEVLHVLRGRLYERRMLGPPLSLAEEEGKPVREMAPVDLSGLCPPPDFRDGVFQEDTINVNEMGSVHQSWT-GEEGCIILLLWAGGHCFIDGACLPQGYEKGGCCTESV 240          
BLAST of NO12G01670 vs. NCBI_GenBank
Match: XP_002177169.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51632.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 88.2 bits (217), Expect = 4.500e-14
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 0
Query:  150 GRRLYWAVMQLPPGRSFNLHVHPCLEVIHVIRGRLHERRMIGPPLS-LIEEEGKLVEEMKPVDLSRMVPPPQFRDGVFLEGSLNANEMGSVHQSWT-DGGEGCLLMCIWGGGHCNI 264
            GR+L W+VM   PG  FNLH HP LE+ +  +G LHE RM G P++   ++      ++K   L+ +  P  F       G    NE+GS+H+S+T   GEGC+L+ +WGG H NI
Sbjct:  122 GRQLQWSVMDCAPGCQFNLHAHPNLELAYCAKGALHEIRMKGDPITKTFKKHPNKKCQLKGPTLTDLDRPWYF--STLSAGEWLVNEVGSIHKSFTATSGEGCILLVLWGGSHANI 235          
BLAST of NO12G01670 vs. NCBI_GenBank
Match: GAX20333.1 (hypothetical protein FisN_9Hh042 [Fistulifera solaris])

HSP 1 Score: 85.1 bits (209), Expect = 3.800e-13
Identity = 52/166 (31.33%), Postives = 80/166 (48.19%), Query Frame = 0
Query:   99 SIQGLETARHFLCQDKEAYSEYWLKEARARFQERKAEREWNAFLRNDGTCGGRRLYWAVMQLPPGRSFNLHVHPCLEVIHVIRGRLHERRMIGPPLSL-IEEEGKLVEEMKPVDLSRMVPPPQFRDGVFLEGSLNANEMGSVHQSWTDGGEGCLLMCIWGGGHCNI 264
            S Q L+         K  Y  +    AR R ++ +   E    L   G    R+L W +M   PG  F LH HP +E+++ + G LHE RM G P +   + +G     +    ++++  P  F  G   +G+   NE+GS+H+S+T    GC L+ +WGG H NI
Sbjct:   30 STQHLQQGARNALLGKYGYESWDFLIARTRDKKNETSDELIELL-TTGKSNQRQLQWTLMDCAPGCQFRLHAHPNIELVYCLEGALHEIRMEGLPFTTSFDSDGSGEGVLIGPSVTQLQRPWTF--GTLQQGTWLVNEVGSIHKSFTASNCGCKLLVLWGGSHANI 192          
BLAST of NO12G01670 vs. NCBI_GenBank
Match: GAX26775.1 (hypothetical protein FisN_9Lh042 [Fistulifera solaris])

HSP 1 Score: 82.4 bits (202), Expect = 2.500e-12
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 0
Query:  106 ARHFLCQDKEAYSEYWLKEARARFQERKAEREWNAFLRNDGTCGGRRLYWAVMQLPPGRSFNLHVHPCLEVIHVIRGRLHERRMIGPPLS-LIEEEGKLVEEMKPVDLSRMVPPPQFRDGVFLEGSLNANEMGSVHQSWTDGGEGCLLMCIWGGGHCNI 264
            AR+ L Q K  Y  +    +RA F ++K   +    L   G    R L WA+M   PG  F LH HP +E+++ + G LHE RM G P +   + +G     +    ++++  P +F  G   +G+   NE+GS+H+S+T    GC L+ +WGG H NI
Sbjct:   50 ARNALLQ-KYGYKSWESLISRA-FDKQKEVPDELIELLTTGKSNQRPLQWALMDCMPGCQFRLHAHPNIELVYCMEGALHEIRMDGLPFTKSFDSDGAGEGILIGPSVTQLQRPWKF--GTLQKGTWLVNEVGSIHKSFTASNCGCKLLVLWGGSHANI 204          
BLAST of NO12G01670 vs. NCBI_GenBank
Match: OEU14027.1 (TPP_enzyme_N-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 69.3 bits (168), Expect = 2.200e-8
Identity = 44/131 (33.59%), Postives = 63/131 (48.09%), Query Frame = 0
Query:  146 GTCGGRRLYWAVMQLPPGRSFNLHVHPCLEVIHVIRGRLHERRMIG---PPLSLIEEEGKLV------EEMKPVDLSRMVPPPQ---FRDGVFLEGSLNANEMGSVHQSWTDGGEGCLLMCIWGGGHCNIE 265
            GT     L    +  P G  F+LH HP +E+   I G+LHERR+IG    P +L + EG           + P  LS ++       F D     G +  N +GS+H+S+T    GCLL+ +W G H N +
Sbjct:  637 GTSNTHHLKMQFIACPKGFDFDLHGHPNIEICIPIVGKLHERRLIGAHIAPSALRQPEGDATFCDPRSSPLTPEHLSSIMDENDDLAFVDRSVKNGKVLFNPIGSIHKSYTRPEVGCLLLTLWSGIHSNFD 767          
BLAST of NO12G01670 vs. NCBI_GenBank
Match: OLP89366.1 (hypothetical protein AK812_SmicGene29192 [Symbiodinium microadriaticum])

HSP 1 Score: 64.7 bits (156), Expect = 5.400e-7
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 0
Query:  155 WAVMQLPPGRSFNLHVHPCLEVIHVIRGRLHERRMIGPPLSLIEEEGKLVEEMKPVDLSRMVPPPQFRDGVF---LEGSLNANEMGSVHQSWTDGGEGCLLMCIWGGGHCNIEGRRLPE 271
            +  + +PP  +F +H HP +E++ ++RG + E R+  PP   +  + K  E   P DL    P  +F    F    EG   ANE+GS+HQ++T+  E CL++ +W G +      +LPE
Sbjct:  117 FVALAIPPRTAFFVHQHPGIELVFLLRGSMSEVRLEDPP--HVHRDCK--EAKAPFDLRN--PEYRFARRTFHAGTEGRWLANEVGSIHQTFTE-DEECLMIAVWPGRYVIFSEEQLPE 228          
The following BLAST results are available for this feature:
BLAST of NO12G01670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM25883.15.100e-7458.77hypothetical protein Naga_100054g26 [Nannochlorops... [more]
XP_002177169.14.500e-1440.52predicted protein, partial [Phaeodactylum tricornu... [more]
GAX20333.13.800e-1331.33hypothetical protein FisN_9Hh042 [Fistulifera sola... [more]
GAX26775.12.500e-1233.96hypothetical protein FisN_9Lh042 [Fistulifera sola... [more]
OEU14027.12.200e-833.59TPP_enzyme_N-domain-containing protein [Fragilario... [more]
OLP89366.15.400e-732.77hypothetical protein AK812_SmicGene29192 [Symbiodi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010086NSK010086Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01670.1NO12G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592141gene_5324Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100054g26gene4651Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01670.1NO12G01670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01670 ID=NO12G01670|Name=NO12G01670|organism=Nannochloropsis oceanica|type=gene|length=864bp
ATGCCGGCTGAGGCACCTGAGCCGGCTGCCAAAGCCAAGGAGGAAGACGA
AACAAGCGAGAAAACGATGTTGGCGGCAGTGGTGGGGCGGGAGGTTGAGA
CTGAAACCCAACCACATACACCAGTGCCTTTACTAGATGAGAACGAGGAG
CAGAACCAGCTACATCACGAGTATCATTTACAGAAGAAGTGTTTCATTCC
CCGCGCTATGCAGCTTGTGAAACACGACGGCCCCATGGTCTGCGTCAACC
GCGGCGAGGCTCCCTTTCCCGAGCAGGGCTTTGACTTCTTTGCATCGATA
CAAGGTCTTGAGACAGCGCGGCATTTTCTTTGCCAGGATAAAGAGGCATA
CAGTGAGTACTGGCTGAAAGAGGCACGGGCTCGCTTTCAGGAGCGGAAGG
CAGAGAGGGAGTGGAATGCCTTTCTTAGAAATGATGGGACTTGTGGTGGG
CGTCGTCTGTATTGGGCCGTGATGCAGCTTCCCCCGGGACGGAGTTTCAA
TTTACACGTCCACCCCTGTTTGGAAGTGATTCATGTTATTCGTGGACGGT
TGCATGAGCGACGGATGATCGGTCCGCCTTTGTCGTTAATAGAGGAGGAG
GGGAAGCTGGTGGAAGAGATGAAACCTGTGGACTTATCACGCATGGTGCC
ACCTCCTCAGTTTCGGGATGGGGTCTTCTTGGAGGGGAGTTTGAATGCGA
ATGAAATGGGGAGTGTGCACCAGAGTTGGACGGATGGGGGCGAAGGGTGT
TTGTTGATGTGCATTTGGGGAGGGGGACATTGTAATATCGAAGGGAGGCG
GTTGCCTGAGGGGTTTCGGATGGGAGGTTGCTGTGGACAGACGATGGTGG
AGGAACACAGATAA
back to top

protein sequence of NO12G01670.1

>NO12G01670.1-protein ID=NO12G01670.1-protein|Name=NO12G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPAEAPEPAAKAKEEDETSEKTMLAAVVGREVETETQPHTPVPLLDENEE
QNQLHHEYHLQKKCFIPRAMQLVKHDGPMVCVNRGEAPFPEQGFDFFASI
QGLETARHFLCQDKEAYSEYWLKEARARFQERKAEREWNAFLRNDGTCGG
RRLYWAVMQLPPGRSFNLHVHPCLEVIHVIRGRLHERRMIGPPLSLIEEE
GKLVEEMKPVDLSRMVPPPQFRDGVFLEGSLNANEMGSVHQSWTDGGEGC
LLMCIWGGGHCNIEGRRLPEGFRMGGCCGQTMVEEHR*
back to top
Synonyms
Publications