NO12G01560, NO12G01560 (gene) Nannochloropsis oceanica

Overview
NameNO12G01560
Unique NameNO12G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr12:474117..474740 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:474117..474740 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO12G01560 vs. NCBI_GenBank
Match: EWM25872.1 (hypothetical protein Naga_100054g17 [Nannochloropsis gaditana])

HSP 1 Score: 118.6 bits (296), Expect = 2.300e-23
Identity = 73/194 (37.63%), Postives = 113/194 (58.25%), Query Frame = 0 
Query:   21 RKSVVLRPEHKKLL-DRAEREDLHKALAEAMELVEQKNKNSFALEKLQEKLRLLEEKLAANDIALDELTDSFEESLRRHQQLTNAALSPIRSEIGLLKDRLNDLTVLLKASSAPTGCGGGKQRLHRQQEQRE------GNFLGVEAIKSNVSHLTTVATALGMRAAYADKMGTENMDAATPAYIISDWSELSSK 208
            RK     P  +KL+ D +EREDL + +A  M LV+      F L++L EK++ LE K+ AN +A++ELTD+ E++L RHQQ T   L+P+++++  LK+ L  L  LL  S   +        L  Q+  +E          G  A+++  SHLTTVATALG++  + +   +   + + P+YIISDWSELS++
Sbjct:   37 RKMAPWSPRRQKLVPDSSEREDLSRVIAGKMALVDDSEDRKF-LKRLYEKVQCLETKILANQVAMEELTDTLEDALSRHQQQTAVTLTPLQNDVLQLKESLAALAALLDTSKTASAIPERSSELSEQKRAKEQGDDGGSGIFGTGAMETQFSHLTTVATALGIKPRFMEGGRSGCAEGSFPSYIISDWSELSTR 229
The following BLAST results are available for this feature:
BLAST of NO12G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25872.12.300e-2337.63hypothetical protein Naga_100054g17 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010075NSK010075Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01560.1NO12G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100054g17gene4643Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01560.1NO12G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01560 ID=NO12G01560|Name=NO12G01560|organism=Nannochloropsis oceanica|type=gene|length=624bp
ATGGTTGTAACGACTTTGAGTATCTTGCTGCCGAGCAATTTGGGAAAGTG
TTTAAGCCGACGTAAATCTGTCGTCCTGAGACCCGAGCATAAGAAGCTAC
TCGACCGGGCGGAGCGCGAGGACCTGCACAAAGCCCTGGCCGAGGCTATG
GAGCTCGTGGAGCAAAAGAATAAGAATAGTTTTGCTTTGGAAAAACTGCA
GGAGAAGCTGCGATTGCTGGAGGAAAAGCTAGCGGCAAACGATATTGCCC
TGGACGAGCTCACAGATAGCTTTGAGGAGTCCTTGCGTCGGCACCAGCAG
CTGACGAACGCCGCTCTTTCGCCCATCAGGAGCGAGATCGGCCTGCTCAA
GGACCGGTTAAATGATCTCACAGTCTTGCTGAAGGCGAGCTCGGCACCGA
CCGGGTGCGGTGGAGGGAAACAGCGACTGCACCGGCAGCAGGAACAAAGG
GAGGGCAATTTTTTGGGAGTTGAGGCGATTAAAAGCAATGTTTCGCACCT
GACTACTGTGGCGACAGCTTTGGGGATGAGAGCTGCCTATGCAGATAAGA
TGGGGACAGAGAACATGGACGCGGCGACGCCTGCATACATAATTTCGGAT
TGGTCTGAGTTGTCCTCGAAATAA
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protein sequence of NO12G01560.1

>NO12G01560.1-protein ID=NO12G01560.1-protein|Name=NO12G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MVVTTLSILLPSNLGKCLSRRKSVVLRPEHKKLLDRAEREDLHKALAEAM
ELVEQKNKNSFALEKLQEKLRLLEEKLAANDIALDELTDSFEESLRRHQQ
LTNAALSPIRSEIGLLKDRLNDLTVLLKASSAPTGCGGGKQRLHRQQEQR
EGNFLGVEAIKSNVSHLTTVATALGMRAAYADKMGTENMDAATPAYIISD
WSELSSK*
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Synonyms
Publications