NO12G01530, NO12G01530 (gene) Nannochloropsis oceanica

Overview
NameNO12G01530
Unique NameNO12G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1428
Alignment locationchr12:468051..469478 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:468051..469478 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01530.1NO12G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592095gene_5311Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01530.1NO12G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01530 ID=NO12G01530|Name=NO12G01530|organism=Nannochloropsis oceanica|type=gene|length=1428bp
ATGCAGAACCGTGTGCTCCCCGCGGCCTTGGCTCGCTTGGCAGCCTCCAC
GACTTCAGCCACCCTCCTTCTCGTCCCTGCTTCATTCCTTCTGCTGCTGC
TGTTGCAATTCTTTCTACCAATTGTCGCAGCCGATTCGACGCTTTTCCCG
CCCCTGCCGCTGCTTAATCAGAATGTCCTCGTTCAAGTCTCCCTCCTTCT
CTCCCCCTCTCCTACACCCATACACCCCATCCCGCTAGACATTCGCTTCA
CGTGCGCATCGACCTCAGCAGCCTTCACTCTCAACAGCACTTACACGCTC
ACTTCTCTCTTTACCTCTTCACTGGCGCACGTAGACGCGCTGTCTTCAAA
GCAAAAGCAGGCGCAGCCCGCATGGACATTCGCCGCCGACAGACACCAGC
TTCAAACACTGCAGCCATGCTGGGTCACGGCGCATACCATTGACACGCCT
CGCCAGCGTCTTGGCTCGAAAGTCGTGTATCCTCCAGgtatgaagctaca
cagagggaaatacgcatatgcttgatggcaggaaggaagaggacccatca
gctgtcgtttgtctaaccccctcccttcctcacattttcccttccattcc
caccacgcacacacaacagCAACTGCCATGCAGCTCTCCATCGTCCTTAG
GATCCATCTTCCCTCACACACTTTGGCCTCCTCCTCCACCTTCTTTTCCT
CCCCTTCCTCTTCTTCTTTCTCCTTTTCCACCTTTTATAACTCCTGGCTG
TCCAAAATCCGGCAACAAACCTACTATTCCCGTACGCGGCTTTTAGAAAT
TCTCATCACATATTACTGGGTGAAAATTACGGCTAAGGACGCCCTCGTCT
TCTTATCCTTTCTCGGTCTTTTCATACAATGCTGTCTTGTGATTGGAGGG
GTGATGTTAGCGTTGGTGCGGAGAACTAAGGAAGAGACCGAGGAGAACAA
ATCGCCTCATGGACAGGAAACGTGCACGTCATTGGCATCCTTCTTCTATT
CTCCACTTACCCTTGCCTCGCAAAAATGCACCGCGCTCACAACACATCCA
CGACGCGTCAGCAGCAACAACAGCAGCAGCAGCAACTACAGTCACAATAG
ACATCAACCTCCCTCCCTCACCGCCATCTCTAGCAACAAGAAGAGGGAAA
GTAATATTACTGTTAGCAAACTCGCAGGAGACTCCTCGTCATTCCTCTTC
CTTGATGTACCGTTTTCGAGTCAATGGCAATGCGTGACGCACGATTGTCG
GGCGGCGCCCACCCTTCTGCAAGACAGAGATTTAGACGCCGTGGCTGCTG
CTGGTGGCTCTGGTAGAAAATTAAAGGGGAGGCACCATCAGGTGATTCCA
ACACCGAAGGAGGTAATGGCACGGCTATTTGCCGACGATCGAAAGGTTAA
AGGTATGGTGTTGTCGGCCAAGTCTTGA
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protein sequence of NO12G01530.1

>NO12G01530.1-protein ID=NO12G01530.1-protein|Name=NO12G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MQNRVLPAALARLAASTTSATLLLVPASFLLLLLLQFFLPIVAADSTLFP
PLPLLNQNVLVQVSLLLSPSPTPIHPIPLDIRFTCASTSAAFTLNSTYTL
TSLFTSSLAHVDALSSKQKQAQPAWTFAADRHQLQTLQPCWVTAHTIDTP
RQRLGSKVVYPPATAMQLSIVLRIHLPSHTLASSSTFFSSPSSSSFSFST
FYNSWLSKIRQQTYYSRTRLLEILITYYWVKITAKDALVFLSFLGLFIQC
CLVIGGVMLALVRRTKEETEENKSPHGQETCTSLASFFYSPLTLASQKCT
ALTTHPRRVSSNNSSSSNYSHNRHQPPSLTAISSNKKRESNITVSKLAGD
SSSFLFLDVPFSSQWQCVTHDCRAAPTLLQDRDLDAVAAAGGSGRKLKGR
HHQVIPTPKEVMARLFADDRKVKGMVLSAKS*
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Synonyms
Publications