NO12G01520, NO12G01520 (gene) Nannochloropsis oceanica

Overview
NameNO12G01520
Unique NameNO12G01520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2528
Alignment locationchr12:465020..467547 -

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Properties
Property NameValue
DescriptionNucleic acid-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:465020..467547 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G01520 vs. NCBI_GenBank
Match: EWM25858.1 (Nucleic acid-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 315.1 bits (806), Expect = 2.400e-82
Identity = 174/274 (63.50%), Postives = 209/274 (76.28%), Query Frame = 0 
Query:    8 SAQVAALLVLLLVPTTPFLFK-PAPSTH------MARQ---HKRPLIKQYANDLEGEGAKPTTTIEIHPPLPAAV---QVEAEVEAARSKHAQSMTLLQDLRPGMRLHGGVVGVTDFAAFLDVKVVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDAPPGQARQQQPTPLETDPAVIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDKQKVVIARRQKRELSKKRNKVKKLEGVEEGLEKKAQVVKLLRTALLVDIGLPVPAFLPHSSIPESVPLE 269
            S  + ++L+LLL   + F FK P P+        MAR      R ++  YAND +G+G   +T      P+ AAV   + +A+ E +RSK +Q++TLLQ LRPGMRLHGGVVGVT+FAAFLDVKVVR+GPGGKLVRCNAMLHPHDVP G  L+RD+        QP PLETDP VIRRGIHV+VYVKDVFPNSGRFSVTLDP++DK KV+ AR+QKR L KKRNKVKKLEGVEEG EK+A+VVKLLRTALL+DIG+PVPAFLPH+ IP++VPLE
Sbjct:   11 STMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTN---ESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDS------HNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVKLLRTALLLDIGMPVPAFLPHNYIPDTVPLE 275
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BLAST of NO12G01520 vs. NCBI_GenBank
Match: XP_005856095.1 (UV excision repair protein RAD23, partial [Nannochloropsis gaditana CCMP526] >EKU20231.1 UV excision repair protein RAD23, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 265.4 bits (677), Expect = 2.200e-67
Identity = 150/244 (61.48%), Postives = 180/244 (73.77%), Query Frame = 0 
Query:    8 SAQVAALLVLLLVPTTPFLFK-PAPSTH------MARQ---HKRPLIKQYANDLEGEGAKPTTTIEIHPPLPAAV---QVEAEVEAARSKHAQSMTLLQDLRPGMRLHGGVVGVTDFAAFLDVKVVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDAPPGQARQQQPTPLETDPAVIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDKQKVVIARRQKRELSKKRNKVKKLEGVEEGLEKKAQVVK 239
            S  + ++L+LLL   + F FK P P+        MAR      R ++  YAND +G+G   +T      P+ AAV   + +A+ E +RSK +Q++TLLQ LRPGMRLHGGVVGVT+FAAFLDVKVVR+GPGGKLVRCNAMLHPHDVP G  L+RD+        QP PLETDP VIRRGIHV+VYVKDVFPNSGRFSVTLDP++DK KV+ AR+QKR L KKRNKVKKLEGVEEG EK+A+VVK
Sbjct:   11 STMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTN---ESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDS------HNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVK 245
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BLAST of NO12G01520 vs. NCBI_GenBank
Match: CBJ29160.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.2 bits (204), Expect = 1.500e-12
Identity = 61/182 (33.52%), Postives = 97/182 (53.30%), Query Frame = 0 
Query:   92 LQDLRPGMRLHGGVVGVTDFAAFLDVKVVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDAPPGQARQQQPTPLETDPAV------IRRGIHVTVYVKDVFPNSGRFSVTLDPTVDKQKVVIARRQKRELSK--KRNKV-KKLEGVEEGLEKKAQVVKLLRTALLVDIGLPVPAFLPHSSIPES 265
            +++L+ G ++ G V   T+FAAF+D  VVR+G   K+V     LH  D+                 ++P  LE  P V      +++GIH+T YVKDVFPN+GR +++LDP ++K KV+  R  KR+ S+  +R ++ KK      G   +  V ++  + LLVD+     + L  S+I  S
Sbjct:  121 IKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDI-----------------KRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNS 285
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BLAST of NO12G01520 vs. NCBI_GenBank
Match: CBJ31572.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.9 bits (167), Expect = 3.000e-8
Identity = 68/226 (30.09%), Postives = 99/226 (43.81%), Query Frame = 0 
Query:   41 RPLIKQYANDLEGEGAKPTTTIEIHPPLPAAVQVEAEVEAARSKHAQSMTLLQDLRPGMRLHGGVVGVTDFAAFLDVKVVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDAPPGQARQQQPTPLETDPAVIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDKQKVVIARRQKRELSKKRNKV---KKLEGVEEGLEKKAQVVKLLRTALLVDIGLPVPAFLPHSSIPE 264
            +P+    +  +E EG      + +  P P A  V+            ++  L DL+ G  L G V  VT FAAF+   V R  P  +  R    +   +V  G     D P   A   Q    +    +I  G  V V+VK+ FP +GRF VTLDP V  + +   RR K E+ KK++K    K+   + EG E    +V++L     VD+G      +  SSI E
Sbjct:  137 KPVTVYVSKVIEAEG---RLEVSLRAPKPLAPIVD----------TSTLKPLADLKHGEELTGVVKTVTQFAAFVQCGVGR--PTRRKRRDGKPMVMEEV-DGFLGKDDVPEDAALSAQLVKTQDQTNIISEGDRVKVFVKETFPGNGRFHVTLDPNVSAEDL---RRMKNEVQKKKSKFARRKETGDLVEGEEILGGIVRVLEFGFFVDVGAKANGLVHISSISE 343
The following BLAST results are available for this feature:
BLAST of NO12G01520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25858.12.400e-8263.50Nucleic acid-binding protein [Nannochloropsis gadi... [more]
XP_005856095.12.200e-6761.48UV excision repair protein RAD23, partial [Nannoch... [more]
CBJ29160.11.500e-1233.52expressed unknown protein [Ectocarpus siliculosus][more]
CBJ31572.13.000e-830.09conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010072NSK010072Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592091gene_5310Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100054g13gene4639Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01520.4NO12G01520.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G01520.3NO12G01520.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G01520.2NO12G01520.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G01520.1NO12G01520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01520.4NO12G01520.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G01520.3NO12G01520.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G01520.2NO12G01520.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G01520.1NO12G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01520 ID=NO12G01520|Name=NO12G01520|organism=Nannochloropsis oceanica|type=gene|length=2528bp
CTCAAGGCAGCTCTTCACCATACATTCTTTCTTTTGCTATCGCCTCACAT
TTTGTACACGCTCACAACATACACAAGCACAAGGCATCCATGCAGCAAAG
AAGACACACCTCTGCCCAAGTGGCAGCGCTGCTCGTCCTTCTCCTTGTTC
CTACCACCCCGTTCCTCTTCAAGCCTGCTCCGTCCACTCACATGGCCCGC
CAGCACAAACGTCCTCTGATAAAGCAATACGCAAATGATTTGGAAGGGGA
AGGCGCAAAACCCACCACCACGATCGAGATTCATCCTCCCCTCCCTGCTG
CTGTCCAGGTGGAGGCAGAAGTGGAAGCGGCAAGGTAAGAAGAGGACGAG
GACAGTATCCATTCCGAATCGCGCACCAATATTTGTGTCTCTATCGGTGG
CTAGCATGAGCAGGTGGTTCAGCCCTTCTCCCGTATCATTACCTCTGGCC
CCCTCCTTCACCAGCCGCAGCAGGCTTGAGCATCGGCCCCGTTCACTCCC
ATCTTATCTTATGACTCGAAAGCATAGGCCACTCCTGATACATACTCCTC
ATGACCAACCCTCCATTCCTCATTACTACCCTTTATTCCAGGTCCAAACA
CGCCCAGAGCATGACGCTCCTCCAGGATCTGCGGCCAGGCATGCGTCTTC
ATGGTGGGGTGGTGGGTGTGACAGATTTTGCTGCGTTCTTAGACGTGAAA
GTGGTGCGAAAAGGACCCGGTGGGAAGgtgagtgctgcagtgcatcggct
atggaaaaggagataggggaacggaaaatgaaggaaggagggggaaaaga
gacaattgtgtagagtaggcatgctggattatgcagctttttttgtggtg
gagggtgtgcggcatgggccaggagggaagcagagcgtcgatacaaagag
aaggaagaaatggagaaaagagaggaaaggggtatgagaatgtccatgag
cgaagcacccgcgctacagacaatgcatgcaatggatgcatgcagtctgg
cccgcaggttaccaatgccgtcagtcgctcaacctgcggtcgtatcaacg
ccagactctcatccaattaattaaaggcgggcctttctgcaagctcgagg
cgtgcagctacaacgccatccgcctgcaccatcgcttttccgctttttcc
ctctctccacgtttgggcctgtaacagatggtattatttaaagccgtgcg
tttacctcttcaccccccatcctccctcccaccctccctcccctccctgc
agCTGGTCCGCTGCAACGCCATGCTCCATCCCCACGACGTGCCCCCCGGC
ACCACTCTCATCCGTGACGCTCCCCCTGGCCAAGCCCGTCAACAGCAACC
CACGCCTCTCGAGACCGACCCCGCAGTCATCCGTCGCGGTATCCATGTCA
CCGTGTACGTCAAGGACGTTTTCCCCAACTCCGGGAGGTTCTCGGTCACG
CTCGACCCGACCGTGGACAAACAAAAGGTGGTGATCGCTCGAAGGCAGAA
GCGAGAATTGAGCAAGAAGAGGAACAAGGTTAAAAAGCTGGAGGGGGTCG
AGGAAGGATTGGAGAAGAAGGCGCAAGTTGTGAAGgtatgtggttgagag
ggaggaagggaaggagggaggggcacgttatggcttggttaaaagggggc
tgtgatgttattagacgagaacagcaatatgtcaaagaatataggggata
gggacggagggaggggtgaagggacggaggagggaatcgaatttctctat
tttccaatttgtagaagtccacaatttcttccattcattttcaccttttt
gttgacacgcaacaccaacaccgcacagCTTTTGCGGACAGCCTTGCTGG
TCGATATTGGTCTACCCGTGCCAGCCTTTCTTCCACATAGCAGCATCCCA
GAATCGGTGCCCTTGGAGgtgcgtctgtgtctgtgtggatttgtggatat
ctgggggggggtgcttgctcgtcgtcgtgtttctggctgttttttttttt
cctcccgggcatttcaccaggtatcatgatttgacaccaagagtcgaatc
agtgcacgacagttatatccacatgcttcatcatcatatttgcacttatt
tggacaacgcgactgacctcctgtcccccttccctttccttcctcttccc
cttttttcctcctgttgccccctctctcaaaaacaaagGACGTGCGTCAA
GTAGGCGTATTAATGACAGTGCGTTTAAGCGAAAAGACGGACAAGCAAAT
CAAATGTGAGATGATGAGGCTCTTACCCCCCACATCTACAGCGCCAGGCA
GGGTGGATGAGTGATGAGTGAAATAAGAAGTACCACATGTCACACAAAGG
ACGACGACGACGATGTTGTTTAGTGAAGATATCAAGGAAAAGGTGGTAGA
AAAAGCACACGCACGGTATCAAAATCGAAAGACAAGATACGTAAACCCTT
AAAGCAAGTGGAGAAGAAAAAGATATGAAGCCATGAACGAACAAACAAAC
ACAAAAACAAAAACAAAAACAACTTCCA
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protein sequence of NO12G01520.4

>NO12G01520.4-protein ID=NO12G01520.4-protein|Name=NO12G01520.4|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MTNPPFLITTLYSRSKHAQSMTLLQDLRPGMRLHGGVVGVTDFAAFLDVK
VVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDAPPGQARQQQPTPLETDPA
VIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDKQKVVIARRQKRELSKKRN
KVKKLEGVEEGLEKKAQVVKLLRTALLVDIGLPVPAFLPHSSIPESVPLE
DVRQVGVLMTVRLSEKTDKQIKCEMMRLLPPTSTAPGRVDE*
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protein sequence of NO12G01520.3

>NO12G01520.3-protein ID=NO12G01520.3-protein|Name=NO12G01520.3|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MQQRRHTSAQVAALLVLLLVPTTPFLFKPAPSTHMARQHKRPLIKQYAND
LEGEGAKPTTTIEIHPPLPAAVQVEAEVEAARSKHAQSMTLLQDLRPGMR
LHGGVVGVTDFAAFLDVKVVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDA
PPGQARQQQPTPLETDPAVIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDK
QKVVIARRQKRELSKKRNKVKKLEGVEEGLEKKAQVVKVCG*
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protein sequence of NO12G01520.2

>NO12G01520.2-protein ID=NO12G01520.2-protein|Name=NO12G01520.2|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MQQRRHTSAQVAALLVLLLVPTTPFLFKPAPSTHMARQHKRPLIKQYAND
LEGEGAKPTTTIEIHPPLPAAVQVEAEVEAARSKHAQSMTLLQDLRPGMR
LHGGVVGVTDFAAFLDVKVVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDA
PPGQARQQQPTPLETDPAVIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDK
QKVVIARRQKRELSKKRNKVKKLEGVEEGLEKKAQVVKLLRTALLVDIGL
PVPAFLPHSSIPESVPLEVRLCLCGFVDIWGGVLARRRVSGCFFFSSRAF
HQVS*
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protein sequence of NO12G01520.1

>NO12G01520.1-protein ID=NO12G01520.1-protein|Name=NO12G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MQQRRHTSAQVAALLVLLLVPTTPFLFKPAPSTHMARQHKRPLIKQYAND
LEGEGAKPTTTIEIHPPLPAAVQVEAEVEAARSKHAQSMTLLQDLRPGMR
LHGGVVGVTDFAAFLDVKVVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDA
PPGQARQQQPTPLETDPAVIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDK
QKVVIARRQKRELSKKRNKVKKLEGVEEGLEKKAQVVKLLRTALLVDIGL
PVPAFLPHSSIPESVPLEDVRQVGVLMTVRLSEKTDKQIKCEMMRLLPPT
STAPGRVDE*
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Synonyms
Publications