NO12G01480, NO12G01480 (gene) Nannochloropsis oceanica

Overview
NameNO12G01480
Unique NameNO12G01480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length447
Alignment locationchr12:458933..459379 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:458933..459379 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0000398mRNA splicing, via spliceosome
Homology
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BLAST of NO12G01480 vs. NCBI_GenBank
Match: EWM25890.1 (hypothetical protein Naga_100054g11 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 5.100e-17
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 0 
Query:   37 SEGISREGASVTTSSSSNSCSRVQLLDRKHKQAVARAEEARARRMEKEMEKAMRDEPEVSPVVLDREGRQIWMEGGDFVTGLVGLNRIASRVGELSDEEKRKILFGSDQLVP 149
            SE    +G    T+  S++   VQ    +  +A  R EEA AR  E++++KAM+ EP V+P+  D EGR+I ++ GDF+TGLVGLNR+A+  G LS+EEKR++LFGSDQLVP
Sbjct: 1368 SEERKNDGKLADTNMDSSTFVAVQRKAWRLNKARIREEEAIAREWERDIQKAMQAEPRVAPMAWDPEGREIVLKPGDFMTGLVGLNRMATDTGSLSNEEKRRLLFGSDQLVP 1479
The following BLAST results are available for this feature:
BLAST of NO12G01480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25890.15.100e-1749.11hypothetical protein Naga_100054g11 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01480.1NO12G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01480.1NO12G01480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01480 ID=NO12G01480|Name=NO12G01480|organism=Nannochloropsis oceanica|type=gene|length=447bp
ATGACAATCTCCAAGAGCGGTGAATCGGGAGCAGCTGTGGGCATCGCAAC
CAAGAAGCTGAAGGAAGGAGGGAGAGAACAATGGGAAGGAGAGAAGGAGG
GGTTCAAGTCTGAGGGAATCAGTAGGGAAGGCGCTTCGGTCACCACAAGC
AGCAGCAGTAATAGTTGTAGTAGGGTGCAGCTCCTCGACCGTAAGCACAA
GCAGGCCGTGGCCCGCGCGGAGGAGGCCAGGGCGCGACGAATGGAGAAGG
AGATGGAAAAGGCAATGAGGGATGAGCCGGAAGTCTCACCTGTGGTCTTG
GACCGCGAGGGGAGACAAATATGGATGGAGGGAGGGGACTTTGTGACGGG
CTTGGTGGGGCTGAATCGGATTGCGTCCAGGGTGGGTGAGTTGTCGGACG
AGGAGAAGAGAAAGATTTTGTTTGGCTCGGATCAGCTGGTGCCTTGA
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protein sequence of NO12G01480.1

>NO12G01480.1-protein ID=NO12G01480.1-protein|Name=NO12G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MTISKSGESGAAVGIATKKLKEGGREQWEGEKEGFKSEGISREGASVTTS
SSSNSCSRVQLLDRKHKQAVARAEEARARRMEKEMEKAMRDEPEVSPVVL
DREGRQIWMEGGDFVTGLVGLNRIASRVGELSDEEKRKILFGSDQLVP*
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Synonyms
Publications