NO12G01460, NO12G01460 (gene) Nannochloropsis oceanica

Overview
NameNO12G01460
Unique NameNO12G01460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3930
Alignment locationchr12:452911..456840 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:452911..456840 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G01460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01460.1NO12G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556316gene_5307Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01460.1NO12G01460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01460 ID=NO12G01460|Name=NO12G01460|organism=Nannochloropsis oceanica|type=gene|length=3930bp
GACAAACCACAGGGGGCTCGGGGGGAGACAGCGTACCTGCCGCGCGTGCC
GAGGACGGAGATAGGGTGGTTCATACGACCCACACCATCAGACCAGCGGG
GCAAAGGGGGCTTGCGGGCGTAGGGTGGGTGGTGGGGGAAAACAAAGAAA
GGGAAGAAGTGAGCGAAGGGACGTGAGAGTGTCGCCATCCCACGCTCCAA
AAATTGGGCCGCGAATTGGAAAGGACGAAGAGAGCAGCTGAGTTGAGACG
GGTATGTTGTGGTAAAGGTCAAGACATAGCCGTGGCGCGGGCGTTTTGGT
GCGTCAGGAAAAAGAAAGCCGGCGGTAGCAGCAGAAGATAGAGTGATGGA
AGGCAGCAGCGAAAGCGGCAGGCGCCGTGCGAGTGCGGGGAGAGAGGAGA
GCGAGGACAGTGAGGCAAGCTCCATTCTCTCGGTATCGCAACAGCACTTG
CAGCAGCAGTATGAACGGCAGCTGGGTGGTAGTGGTTTAGGTGCTGGGGT
CAGCAAGGAGAGTGGAGGGGCAGGAGACGGGGGCGAGGGGAATgtaagta
gtgtgatgaaataataaagcaggaaaggacaggaaggggaacagcaattt
tacgcatttattcagaatcctcctgttcgaattttgatcttcaattacct
cagtcagacacagatgcaaatgtgaaatgagacggggaggggaagacgca
gagagacataaatttcctttcttatttcaataacgctcgcctaatctgta
atttctctctatcacatccattcatacccacagCTACAACTCAGCCCTTT
CCCCCAACTTCGGATCGACGATCATTTTTTGGCCGGCGCCGGGAGCGGGA
GTGGGGGTCGTGCAAGCGGCCTTGGTGCTTTCTCGTCCGTTTCCTCCTCC
TCCTCCTACATGGCGAACAGCAATGATTGTCTGCACGGTGGAAGGGTTCC
AACGGAAGCCGATTTGCAGCACCAGCAGCAATATCAGCATCAACATCACC
AACCACATCTCTCCTCTTTCCCTTCCTCCTCTTCCTTTTCGCTAACCGTG
GACGGCGGCGCCTCCTTCTCCTCACCCCTTAATCACCAGGATGCGAAAGG
GAGAGAAAGCGAGTTAAGTGTCCCTCCCGGCTTCATGCCTATCAGAAGTC
TGCAACAACCAGGCATGCTCCATTGCTCTTCCTCCTACCCTTTGGAGCCT
GAAGGCTCGCCGCAGACAAGGGCAAGAGTTCTCTGGGACCCGTACAAACC
CTTGGACGCCTCACAAAATCCTAGGGGAGAAGGAAGCGGGATCGGAGGCG
AAGAGAGCGGCGGGGCCAATGTGGATATGTTGTCTTTCTTCCAGCGGCAG
GCTTTGGGAGGGGCAGGAGCAGGAGCAGGAGCAGGAGCAGGGAGAAGTGG
AGGAGGGGGTAATTCGGCGCCGGGGCCGAAGAGTGGGGCGAGTCTGAGTG
ATCAGTCCTCTCCTTATTTTATAGGAGGAGACGGAGGGAGAGACATAGGG
AGAGAGGATGGTTTGGGTTCATCCCGCTCTTCCCCGTTACAGCCGCCGCA
TTCAGCGGGACGCGGAGGAGGGGGAAGAGGAAGGGAGGGAGGGGGGGAGG
GATTGTCGTTTATGAGTTTCGGTTTTTCCTTGGATGCGTTTTCACCGAAG
CTGAATTCACTGCCGCAGGTGCTGCAGCCACTGTCGCTCACCCACCAAAA
ATCGGAGGAGCAACAGCAGCACATTCAAAAGGCTTTGACTCCTTCCCATG
AACAGCAACATCGCCACCACCAGTGGCAGCAGCAGAAGCAGCAGCAGCAG
CAACAACAACAACAACATCAACAACAGTACCGGCTGCAGCAGTATCAACA
GAAGCACAGTGATTTTGGCTGCAGAAGTGTCAGCAGTAGTAGCAGCAATA
GCAACAGCAGCAGCAGTAGAAGTCTCTACAAACCCCTACCACCACTCTCC
ATCCCTTCTACACCTGATCAGACATCAGCAGCAGCAGCTGCGGCAGCAGA
AGCAGTGTCACTTCACTCCCCCCACTCCGTCCAAATAAGTCGCTTGCTCG
AATCACTATCCGTACACGGGGAGGAGGGCAAGAAGGAGGGCGTTAGGGAG
GGAGATGTGAAGAGTCAGGCGACCCACGTGCGGTCTTCAAGTGAATCTCA
AAGAGGGGGTTTGTCTTATCCTTCCTCGTATGAAGGGTATTCGATGGATG
GAGCAACAGCAGCCCCAGTCGGGGGAGCAGCTGGAGGAGTAGGAGAAGGA
GGAAGAGAAGTTGTAGAGGTTGACGTGACGTTGGATAAAAGGCCGTCGCA
TGTATTGCCGTTAGAAGGAGCAGCAGCAGCAGTGGGAGGAAGAGGAGGAG
GAAGAAGAGGTGACGGGGGAGAAGGAGGGATTGACCCCGGTGTCCTCGAG
TCTTTTGAATCGTTGCGGCAGCACGTAGGCCACGAGGAGGCTGTGCGTCT
CTTGCTCTTGCATTACCAGCAGCAGCAACAGCAGCAGTCGCTTGAACAAA
CTCGACAGGCCCAAACTCAGTTGAATGCGCAAAAGCGTACTCAGCAGCAG
CAGCAGCAGCAGCAACAACAACAACAACTACAGCAGCGGCAGCAGCTTCT
TGAGCACCAGCAGCTCCAAGAGCAAGACCACCACCAGCAGCAGCAGCAGC
AGCAACAACAACAACTACAGCAGCGGCAGCAGCTTCTTGAGCACCAGCAG
CTCCAAGAGCAAGACCACCACCAGCAGCAGCAGCAGCAGCGATTTCTCCA
GCAGCAGCTCCTACTCCAGCAGCTTCAACTTCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCGGACAAGCATCCCAACACCTCACCACCAC
GGCAGAAACCATCACAGCAACAGCAGTAGCTCATCTTTCGTGCAGCAGAA
TAATCATCATCATCAGCAGCAGCAGCAGCAAGAAATCTTCGCTGCCCACC
AGCAGTTGGCAGCCTTGGCACGGAGCCCGTCGTCCTCAGCATCGGTATCA
GCGGCAACCGTGGAAGCGCAACGTCTCTTCTTTGAAGCACAACAGCAGAA
AGAGCACCTGGAGCAGCTCTTGCTTCAGCAGCAGCATCAGCAGCAGCAGC
AGCAGCAAGCGGCATTCCGTTGGCAGAAACAACAGCAGAAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACAACAACATCAGCAACAACAGCAACG
AGAACGTTTAAACCACTTCCCTCCCCCCCACCTGAATCACCAGGGAGGGA
AGGAGGGAGCGGGGTTTTCGGGCACCTCTCCTCCCCATCACCAGCATTAC
CATAAGTCGTCGCACCAGCTGTCAATGCCTTCGAAAGCTGAGCGGTCATT
CAGTGAGAATGACATTGCTGCTGCTTCCTTCCTCTATTCCTCGGAGAAAC
AGAGAGAAATCCCACGCCATGCCCACCGTCAGTACCGTCAATTGCAGCAG
CAGCAATTCGGGCAATACGGGCAGCAGCCGCAGATCCCTACGCATCATCT
GCCTATCCATTTGCGTGGTAATAAGCAGCAGCAGCAGTATTTTGGTGGCG
GTGGTGGAGGGAGGGAAGGTGGGAGGGAGGTTGGGCACCACTACGGCATC
CCGCCCCACCACCACAAAGGCGGCAGCCTGCCTCGATCTCCCTATAATCT
GCCCGTGGACGTGCACCATCACCATAACCTAGGCCCACCCTCCTCCATTA
CTCCCCCCCTCAATCATCACTCCCACGGACACATTCCTTCCGTCCTTCCT
CCTCCTCCTTATCCTCCTCCTTCCTCACTACACCATTATTCTTCCTCTCT
ATCCCTCTCCTCCTCCTATTCCTCCTCCTCCTCTTTGTCTTCTTCCCTCG
CCTCATCCCTCCCTCCGGTCGTCACCACCTCCGTCCCCCCCCGGGGCTGC
TGGTACATAAGGCGGATGCCATGGCCGTGA
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protein sequence of NO12G01460.1

>NO12G01460.1-protein ID=NO12G01460.1-protein|Name=NO12G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1115bp
MEGSSESGRRRASAGREESEDSEASSILSVSQQHLQQQYERQLGGSGLGA
GVSKESGGAGDGGEGNLQLSPFPQLRIDDHFLAGAGSGSGGRASGLGAFS
SVSSSSSYMANSNDCLHGGRVPTEADLQHQQQYQHQHHQPHLSSFPSSSS
FSLTVDGGASFSSPLNHQDAKGRESELSVPPGFMPIRSLQQPGMLHCSSS
YPLEPEGSPQTRARVLWDPYKPLDASQNPRGEGSGIGGEESGGANVDMLS
FFQRQALGGAGAGAGAGAGRSGGGGNSAPGPKSGASLSDQSSPYFIGGDG
GRDIGREDGLGSSRSSPLQPPHSAGRGGGGRGREGGGEGLSFMSFGFSLD
AFSPKLNSLPQVLQPLSLTHQKSEEQQQHIQKALTPSHEQQHRHHQWQQQ
KQQQQQQQQQHQQQYRLQQYQQKHSDFGCRSVSSSSSNSNSSSSRSLYKP
LPPLSIPSTPDQTSAAAAAAAEAVSLHSPHSVQISRLLESLSVHGEEGKK
EGVREGDVKSQATHVRSSSESQRGGLSYPSSYEGYSMDGATAAPVGGAAG
GVGEGGREVVEVDVTLDKRPSHVLPLEGAAAAVGGRGGGRRGDGGEGGID
PGVLESFESLRQHVGHEEAVRLLLLHYQQQQQQQSLEQTRQAQTQLNAQK
RTQQQQQQQQQQQQLQQRQQLLEHQQLQEQDHHQQQQQQQQQQLQQRQQL
LEHQQLQEQDHHQQQQQQRFLQQQLLLQQLQLQQQQQQQQQQQQQRTSIP
TPHHHGRNHHSNSSSSSFVQQNNHHHQQQQQQEIFAAHQQLAALARSPSS
SASVSAATVEAQRLFFEAQQQKEHLEQLLLQQQHQQQQQQQAAFRWQKQQ
QKQQQQQQQQQQQQQHQQQQQRERLNHFPPPHLNHQGGKEGAGFSGTSPP
HHQHYHKSSHQLSMPSKAERSFSENDIAAASFLYSSEKQREIPRHAHRQY
RQLQQQQFGQYGQQPQIPTHHLPIHLRGNKQQQQYFGGGGGGREGGREVG
HHYGIPPHHHKGGSLPRSPYNLPVDVHHHHNLGPPSSITPPLNHHSHGHI
PSVLPPPPYPPPSSLHHYSSSLSLSSSYSSSSSLSSSLASSLPPVVTTSV
PPRGCWYIRRMPWP*
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Synonyms
Publications