NO12G01440, NO12G01440 (gene) Nannochloropsis oceanica

Overview
NameNO12G01440
Unique NameNO12G01440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length943
Alignment locationchr12:448397..449339 -

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Properties
Property NameValue
DescriptionDynein light chain 1, axonemal
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:448397..449339 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR025875Leu-rich_rpt_4
Homology
[Close]
BLAST of NO12G01440 vs. NCBI_GenBank
Match: XP_002291936.1 (leucine-rich repeat protein [Thalassiosira pseudonana CCMP1335] >EED90787.1 leucine-rich repeat protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 180.6 bits (457), Expect = 4.600e-42
Identity = 97/174 (55.75%), Postives = 130/174 (74.71%), Query Frame = 0 
Query:    5 KATQVKMCCQG--IVKLDSS-LNALSNCECLSLSTNQIDRMVPLTGMKKLRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLVTSLDGLASLNKLTTLFISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDGM-SKEEARLEVLRRLPFIKKIDGVLVTPLETEKALGASVAE 175
            +AT+V +C Q   I KLD+  LN L  C+ LSLSTN I+RM+ LTGM +L++LS+GRN +KKIEKLEDV  +L++LW+SYN ++SLDGLA +  LTTL+ SNN IK+++E+DKL A   LRDVL +GNP+Y  + +KEEAR+E+LR LP +KKIDG  V P E E A  A  ++
Sbjct:   23 EATEVSLCFQAPPITKLDAKVLNNLKKCQKLSLSTNMIERMISLTGMSELKILSIGRNNIKKIEKLEDVASSLQQLWISYNQISSLDGLACVTGLTTLYCSNNLIKSFSELDKLKANEQLRDVLFIGNPMYSEVATKEEARIEILRHLPNLKKIDGEFVKPSELEAAQQAVTSD 196
[Close]
BLAST of NO12G01440 vs. NCBI_GenBank
Match: XP_009034564.1 (hypothetical protein AURANDRAFT_58761 [Aureococcus anophagefferens] >EGB11004.1 hypothetical protein AURANDRAFT_58761 [Aureococcus anophagefferens])

HSP 1 Score: 180.3 bits (456), Expect = 6.000e-42
Identity = 94/179 (52.51%), Postives = 137/179 (76.54%), Query Frame = 0 
Query:    3 AAKATQVKMCCQ--GIVKLDSSLNALSNCE----CLSLSTNQIDRM-VPLTGMKKLRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLVTSLDGLASLNKLTTLFISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDGMSKEEARLEVLRRLPFIKKIDGVLVTPLETEKALGASVAE 175
            A+ A  VK+ CQ   I KLDSSLN L+ CE     L LSTN ID++ +  TG+K L++LSLGRN +KKIEKL+D+G++LEELW+SYN +++L+GL ++ KLTTL++SNN +K +AE++K+A +PNL+DVL VGNP+Y+G++  E+R+E+LRRLP + KIDG +V   + ++A  A+  E
Sbjct:   19 ASDAKIVKLYCQIPPIAKLDSSLNNLAACERAAAHLQLSTNNIDKIGLAFTGLKNLKILSLGRNVIKKIEKLDDLGDSLEELWISYNQISALEGLHAMTKLTTLYMSNNNLKNFAELEKIAGLPNLKDVLFVGNPMYEGLTAAESRIEILRRLPNLAKIDGSMVLQRDRDEAAAAAAEE 197
[Close]
BLAST of NO12G01440 vs. NCBI_GenBank
Match: CBJ48309.1 (Dynein light chain flagellar outer dynein arm light chain LC1 [Ectocarpus siliculosus])

HSP 1 Score: 174.5 bits (441), Expect = 3.300e-40
Identity = 93/173 (53.76%), Postives = 120/173 (69.36%), Query Frame = 0 
Query:    3 AAKATQVKMCCQ--GIVKLDSSLNALSNCECLSLSTNQIDRMVPLTGMKKLRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLVTSLDGLASLNKLTTLFISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDGMSKEEARLEVLRRLPFIKKIDGVLVTPLETEKALGASVA 174
            A +AT VK+ CQ   I KLD+SLN+L NCE LSLSTN IDR++PL GMK                KL+DV E+LEELW+SYN VT+LDGL++      L++SNN +K+WAE+DKL  +  L DVL +GNPIY+GMSKE+AR+EVLR +P + KIDG +V P E + A   +VA
Sbjct:   19 AEEATVVKLYCQMPPIAKLDNSLNSLKNCEQLSLSTNCIDRIIPLAGMKXXXXXXXXXXXXXXXXKLDDVAESLEELWISYNQVTTLDGLSNXXXXXRLYMSNNSVKSWAELDKLTGLEELTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPTERDAANPEAVA 191
[Close]
BLAST of NO12G01440 vs. NCBI_GenBank
Match: CDW82434.1 (dynein light chain [Stylonychia lemnae])

HSP 1 Score: 172.2 bits (435), Expect = 1.600e-39
Identity = 88/167 (52.69%), Postives = 122/167 (73.05%), Query Frame = 0 
Query:    3 AAKATQVKMCCQ--GIVKLDSSLNALSNCECLSLSTNQIDRMVPLTGMKKLRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLVTSLDGLASLNKLTTLFISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDGMSKEEARLEVLRRLPFIKKIDGVLVTPLETEKA 168
            AA+AT+VK+ CQ   I K+D SLN L  C+ LSLSTN I+RM+ L  +K LR+LSLGRN +K+I  LEDVG+TLEELWLSYN +  LDGL    KL TLFISNN++++W E+ K+  +P ++ +LLVGNPIY   SK++    +++R+P I+ IDG +V+P   ++A
Sbjct:   21 AAEATEVKLICQIPPIDKMDDSLNQLEMCQKLSLSTNAIERMIALPKLKNLRILSLGRNNIKRIMALEDVGQTLEELWLSYNQIEKLDGLQPCIKLHTLFISNNKVRSWDEVSKVGQLPEIKSILLVGNPIYGDKSKDDNAPYIVKRVPQIENIDGKMVSPAIRKQA 187
[Close]
BLAST of NO12G01440 vs. NCBI_GenBank
Match: XP_004040119.1 (hypothetical protein IMG5_001560 [Ichthyophthirius multifiliis] >EGR34815.1 hypothetical protein IMG5_001560 [Ichthyophthirius multifiliis])

HSP 1 Score: 147.9 bits (372), Expect = 3.300e-32
Identity = 78/159 (49.06%), Postives = 110/159 (69.18%), Query Frame = 0 
Query:    4 AKATQVKMCCQ--GIVKLDSS-LNALSNCECLSLSTNQIDRMVPLTGMKKLRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLVTSLDGLASLNKLTTLFISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDGMSKEEARLEVLRRLPFIKKIDGVLV 160
            A+A ++K+  Q   I K+D   LN L+ C+ LSLS+N ID+M+PL  ++ L +LSL RN +KKI  LED+G TL +LW+SYNL+  LDGL +   L TL+I NN+IK W E+DKL  +P L  VL  GNP+YD + KE+ +  VL++LP +K IDG ++
Sbjct:   23 AEAEEIKLIFQIPPIEKMDGPVLNTLTKCKKLSLSSNSIDKMIPLNMLRNLEILSLSRNVIKKISGLEDIGSTLRQLWISYNLIEKLDGLNNCVVLNTLYIGNNRIKNWEELDKLKELPELSVVLFYGNPMYD-LVKEDPKYYVLKKLPTLKNIDGTII 180
[Close]
BLAST of NO12G01440 vs. NCBI_GenBank
Match: XP_005846416.1 (hypothetical protein CHLNCDRAFT_135528 [Chlorella variabilis] >EFN54314.1 hypothetical protein CHLNCDRAFT_135528 [Chlorella variabilis])

HSP 1 Score: 145.6 bits (366), Expect = 1.600e-31
Identity = 82/171 (47.95%), Postives = 115/171 (67.25%), Query Frame = 0 
Query:    1 MVAAKATQVKM--CCQGIVKLDSSLNALSNCECLSLSTNQIDRMVPLTGMKKLRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLVTSLDGLASLNKLTTLFISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDGMSKEEA----RLEVLRRLPFIKKIDGVLVTPLETE 166
            + A +A +V++   C  I K+DSSL AL  C  L+LSTN +D++  LTG+++L VLSLGRN LKK+E LE V  TL++LWLSYN +  L G+   ++       NN+IK WAEID+L+A+P L D+LLVGNP+Y+   +  A    R+EVL+R+P +KK+DG  V   E E
Sbjct:   22 VAAGEAERVELTGLCPPIDKMDSSLAALHACRHLALSTNNLDKIGNLTGLERLEVLSLGRNCLKKLENLEAVAGTLQQLWLSYNQIDRLAGIEKCSQXXXXXXXNNRIKDWAEIDRLSALPELEDLLLVGNPLYNEWKENGALPQYRIEVLKRVPTLKKLDGQPVDVEERE 192
[Close]
BLAST of NO12G01440 vs. NCBI_GenBank
Match: OMJ70958.1 (hypothetical protein SteCoe_30953 [Stentor coeruleus])

HSP 1 Score: 142.5 bits (358), Expect = 1.400e-30
Identity = 72/160 (45.00%), Postives = 109/160 (68.12%), Query Frame = 0 
Query:    3 AAKATQVKMCCQG--IVKLDSSLNALSNCECLSLSTNQIDRMVPLTGMKKLRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLVTSLDGLASLNKLTTLFISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDGMSKEEARLEVLRRLPFIKKIDGVLVT 161
            A++AT++++C     I K+D  LN L++C  LSLSTN I              +SLGRN ++KI  L++VG TLE+LW+SYNL+  LDG+ S  +L TLFISNN+IK W E+ +L+ + +L+++LL GNPIY+G +KE+ + +V+RR   I  +DG +V+
Sbjct:   20 ASEATEIRLCAWNPPINKMDQGLNQLTSCTKLSLSTNSIXXXXXXXXXXXXXXISLGRNIIRKITGLDEVGATLEQLWISYNLIEKLDGIQSCVRLNTLFISNNKIKNWEEVSRLSQLSSLKNLLLAGNPIYEGFTKEDVKPQVIRRCGQIDVLDGTIVS 179
[Close]
BLAST of NO12G01440 vs. NCBI_GenBank
Match: OMJ77425.1 (hypothetical protein SteCoe_22984 [Stentor coeruleus])

HSP 1 Score: 142.5 bits (358), Expect = 1.400e-30
Identity = 72/160 (45.00%), Postives = 109/160 (68.12%), Query Frame = 0 
Query:    3 AAKATQVKMCCQG--IVKLDSSLNALSNCECLSLSTNQIDRMVPLTGMKKLRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLVTSLDGLASLNKLTTLFISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDGMSKEEARLEVLRRLPFIKKIDGVLVT 161
            A++AT++++C     I K+D  LN L++C  LSLSTN +D+             SLGRN ++KI  L++VG TLE+LW+SYNL+  LDG+ S  +L TLFISNN+IK W E+ +L  + +L+++LL GNPIY+G +KE+ + +V+RR   I  +DG +V+
Sbjct:   20 ASEATEIRLCAWNPPINKMDQGLNQLTSCTKLSLSTNSLDKXXXXXXXXXXXXXSLGRNIIRKITGLDEVGATLEQLWISYNLIEKLDGIQSCVRLNTLFISNNKIKNWEEVSRLNQLGSLKNLLLAGNPIYEGYTKEDVKPQVIRRCGQIDVLDGTIVS 179
[Close]
BLAST of NO12G01440 vs. NCBI_GenBank
Match: XP_002668575.1 (hypothetical protein NAEGRDRAFT_54720 [Naegleria gruberi] >XP_002670112.1 hypothetical protein NAEGRDRAFT_74922 [Naegleria gruberi] >EFC35831.1 hypothetical protein NAEGRDRAFT_54720 [Naegleria gruberi] >EFC37368.1 hypothetical protein NAEGRDRAFT_74922 [Naegleria gruberi])

HSP 1 Score: 140.6 bits (353), Expect = 5.200e-30
Identity = 73/153 (47.71%), Postives = 106/153 (69.28%), Query Frame = 0 
Query:   19 LDSSLNALSNCECLSLSTNQIDRMVPLTGMKKLRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLVTSLDGLASLNKLTTLFISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDGM--SKEEARLEVLRRLPFIKKIDGVLVTPLETEKALG 170
            +D++++ + NC+ L+LSTN IDR+  L G+  L +LSL RNQ+K++E L+ V  TLE+LWLSYN +TSL G+  L KL  L+  NN+I +W+EID+L  +P+L ++LL GNP+      + E  R+EVLRRLP +KK+DG      E E+A G
Sbjct:    1 MDTTVSQMKNCKRLALSTNCIDRIGGLQGLVSLEILSLARNQIKRLENLDAVAPTLEQLWLSYNNLTSLAGVEKLKKLKVLYCGNNKISSWSEIDRLKDLPDLEEILLTGNPLEKNTKDAGENWRIEVLRRLPSLKKLDGRPFDLAEREQAEG 153
[Close]
BLAST of NO12G01440 vs. NCBI_GenBank
Match: OMJ73407.1 (hypothetical protein SteCoe_27919 [Stentor coeruleus])

HSP 1 Score: 139.0 bits (349), Expect = 1.500e-29
Identity = 71/160 (44.38%), Postives = 107/160 (66.88%), Query Frame = 0 
Query:    3 AAKATQVKMCCQG--IVKLDSSLNALSNCECLSLSTNQIDRMVPLTGMKKLRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLVTSLDGLASLNKLTTLFISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDGMSKEEARLEVLRRLPFIKKIDGVLVT 161
            A++AT++++C     I K+D  LN L++C  LSLSTN                 SLGRN ++KI  L++VG TLE+LW+SYNL+  LDG+ S  +L TLFISNN+IK W E+ +L+ + +L+++LL GNPIY+G +KE+ + +V+RR   I  +DG +V+
Sbjct:   20 ASEATEIRLCAWNPPINKMDQGLNQLTSCTKLSLSTNXXXXXXXXXXXXXXXXXSLGRNIIRKITGLDEVGATLEQLWISYNLIEKLDGIQSCVRLNTLFISNNKIKNWEEVSRLSQLSSLKNLLLAGNPIYEGFTKEDVKPQVIRRCGQIDVLDGTIVS 179
The following BLAST results are available for this feature:
BLAST of NO12G01440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002291936.14.600e-4255.75leucine-rich repeat protein [Thalassiosira pseudon... [more]
XP_009034564.16.000e-4252.51hypothetical protein AURANDRAFT_58761 [Aureococcus... [more]
CBJ48309.13.300e-4053.76Dynein light chain flagellar outer dynein arm ligh... [more]
CDW82434.11.600e-3952.69dynein light chain [Stylonychia lemnae][more]
XP_004040119.13.300e-3249.06hypothetical protein IMG5_001560 [Ichthyophthirius... [more]
XP_005846416.11.600e-3147.95hypothetical protein CHLNCDRAFT_135528 [Chlorella ... [more]
OMJ70958.11.400e-3045.00hypothetical protein SteCoe_30953 [Stentor coerule... [more]
OMJ77425.11.400e-3045.00hypothetical protein SteCoe_22984 [Stentor coerule... [more]
XP_002668575.15.200e-3047.71hypothetical protein NAEGRDRAFT_54720 [Naegleria g... [more]
OMJ73407.11.500e-2944.38hypothetical protein SteCoe_27919 [Stentor coerule... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010067NSK010067Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01440.1NO12G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556310gene_5304Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01440.1NO12G01440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01440 ID=NO12G01440|Name=NO12G01440|organism=Nannochloropsis oceanica|type=gene|length=943bp
TCAAAAAGTCAGTCTGATGCCTCAGCCCCTTTTTTGACCTTGCTTTTTCC
ATACCAAAACTTACTGACGCCTTGTTTCAAATTCCCTGCCAGATCAACAG
GACCTGTTCCATCTTACAACTCGAGATCTTGTCCGCCTGTTCGTCAATCA
ACGAAATGGTGAGTTGTTGTTGTTGTCTCTCGAAAATGTGATGGGCCGTC
CCTCCTTTTTTTTTCCCACACCTCTTTTACCCCCACACGACAAACTACGA
ACCTTAAACTAAGACAAGCACCACCCAAGCTTTGAAATTCTGGGAAGCTA
AGACAAGCATGGTCGCAGCCAAGGCCACTCAGGTAAAAATGTGTTGCCAA
GGTATCGTCAAGCTCGATTCGTCGCTCAACGCCTTGAGCAACTGTGAGTG
CCTCTCCCTCTCCACCAACCAGATCGACCGAATGGTTCCACTAACGGGGA
TGAAAAAATTACGAGTTTTATCCTTGGGACGAAACCAGCTCAAGAAAATC
GAGAAGTTGGAGGACGTGGGCGAAACTTTGGAAGAGCTCTGGCTTTCGTA
CAATTTGGTCACTTCCCTCGATGGCCTGGCTTCCTTGAACAAGCTTACAA
CTCTCTTCATCTCTAATAATCAAATTAAAGCATGGGCAGAGATCGATAAA
TTGGCCGCCATGCCAAATCTGCGCGATGTGCTCTTGGTGGGAAATCCCAT
CTATGACGGCATGTCGAAGGAAGAAGCCCGTTTAGAGGTTTTGCGGCGCC
TTCCCTTTATCAAGAAAATCGATGGGGTTCTGGTCACACCCTTGGAGACG
GAAAAGGCTTTGGGGGCCAGCGTTGCAGAGGGATCAACCGGGGCCTCAAA
GGCGACGGCGGCGGGCGCCACGAGCAGTGTGGCACCAATAGAGTAATTAA
CAAATATGTTTGGTGAGAGCAGAAAGAAAAAAATATATGAAAG
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protein sequence of NO12G01440.1

>NO12G01440.1-protein ID=NO12G01440.1-protein|Name=NO12G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MVAAKATQVKMCCQGIVKLDSSLNALSNCECLSLSTNQIDRMVPLTGMKK
LRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLVTSLDGLASLNKLTTLF
ISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDGMSKEEARLEVLRRLPF
IKKIDGVLVTPLETEKALGASVAEGSTGASKATAAGATSSVAPIE*
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Synonyms
Publications