NO12G01390, NO12G01390 (gene) Nannochloropsis oceanica

Overview
NameNO12G01390
Unique NameNO12G01390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2136
Alignment locationchr12:429876..432011 -

Link to JBrowse

Properties
Property NameValue
DescriptionRetinitis pigmentosa gtpase regulator
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:429876..432011 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003839gamma-glutamylcyclotransferase activity
GO:0003839gamma-glutamylcyclotransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006751glutathione catabolic process
GO:0006751glutathione catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036568GGCT-like_sf
IPR009091RCC1/BLIP-II
IPR006840ChaC
IPR000408Reg_chr_condens
Homology
BLAST of NO12G01390 vs. NCBI_GenBank
Match: EWM25894.1 (retinitis pigmentosa gtpase regulator [Nannochloropsis gaditana])

HSP 1 Score: 744.6 bits (1921), Expect = 2.900e-211
Identity = 394/631 (62.44%), Postives = 442/631 (70.05%), Query Frame = 0
Query:   82 MPGLVVTVLSDAELEGMDLRQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLP-THSNGSTSTGNNGGSIKALLYTANAENPNFHHPTTLEEAAHIVAWSRGPSGENKEYLFEVDAYLRRVGAECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILVGTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQLGRR---------QVHGAVQTQEDEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAIVTDEDRLYLWGWNEKGQVGGGKHTILDGTRCVRVFPRRVAMVALGHAHTLVLEKDTGKIYGIGANAAEEATG-SSSCSSTCRAIGGVPVTLSGAFGGGKEQLRFSWCAAGVRHSAGVTQ-DGRLVTWGSNKYGEGLPVSVRSWAPGDGGRVVKVCCGXXXXXXXXXXXXXXXXXXXXXXQLGWGWKEEMGREDEVAGLPQQVQWPTAVDEGGEGRWVEDVACGWSHVLAKTRDGQVWGWGRNTFGQLAQESRNTAIAAAAAGNLFPRRLLPLPGCLPHGARVREIACGTESSALVGDDGSVWACGWNEHGNLGVGDKKDRGVWTRVLGFPTREEEGAARMLVACGGAHVLAV 701
            MPGLVVTVLSD+ELE M +R+ATDPPSRVHGVAYRIPDE VA VLDELDFREKGGYTRAVVEV P T S G T        I+ALLYTANA+NPNFHHP+TLEEAAHIVAWSRGPSGEN+EYLFE++AYLRR GAEC ETF LT RV+EVLE+GLDRRGSLDAR R+ LV  +  +  G  E   G  AVWQ+LRL AWGSNQHGQLG+R          +   V+T +D+EWP P PT V++DVA TVS Q GS A A  +H L +RQLAAGGGHSAIVT EDRLYLWGWNE GQVGG K+  LDGT  V VFPRRVAMVALGHAHTLVLEKDTGK+YG+G NAA EATG        CRA+GG  VTL     GG + +RFSWC AGVRHSAGVT+ DGRLVTWG  + G  LP SVR WAP DG +V KV CG                      QLG        R  +  GLP+ V+WP      GEG  VE+VACGWSHVL KT DG++WGWGRNTFGQL  E+   A       +  PR LL     LPHG +V ++ CG+ESS LVG DGS+W CGWNEHGNLGVGD KDR  WT V G       G  +MLVACGGAH LA+
Sbjct:    1 MPGLVVTVLSDSELETMGMREATDPPSRVHGVAYRIPDENVARVLDELDFREKGGYTRAVVEVKPTTSSTGGTDKSGRQEVIRALLYTANADNPNFHHPSTLEEAAHIVAWSRGPSGENREYLFEIEAYLRRAGAECPETFALTTRVEEVLERGLDRRGSLDARFRRDLVVVSGTQARGGTE---GIWAVWQRLRLHAWGSNQHGQLGKRAEAVGDGAFDLDMGVKTDKDDEWPLPQPTVVEVDVATTVSLQSGSRAQAADEHRLLVRQLAAGGGHSAIVTGEDRLYLWGWNEAGQVGGSKYATLDGTHRVHVFPRRVAMVALGHAHTLVLEKDTGKLYGVGGNAAGEATGVVMEQRKQCRAVGGGLVTLD----GGSDPIRFSWCDAGVRHSAGVTRDDGRLVTWGVGRSGACLPASVRGWAPVDGAKVRKVWCGWQHTVVLDDRGRVWTLGANKYGQLG-------RRGSQNDGLPELVEWPEGAGREGEGVRVEEVACGWSHVLVKTHDGEIWGWGRNTFGQLGSEA--VAEPETIGRDYLPRPLLKDKDRLPHGVQVDKVTCGSESSMLVGKDGSLWVCGWNEHGNLGVGDGKDRKSWTLVPGLSA--GSGGGKMLVACGGAHTLAM 613          
BLAST of NO12G01390 vs. NCBI_GenBank
Match: GAX15070.1 (hypothetical protein FisN_12Lh233 [Fistulifera solaris])

HSP 1 Score: 300.8 bits (769), Expect = 1.100e-77
Identity = 256/737 (34.74%), Postives = 350/737 (47.49%), Query Frame = 0
Query:    1 MSTSTSTPSRQ--------WDAAQGVWVGS-----RALADEADEIPDPLYIFGYGSLMFRPQESFAACERV---GGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAELEGMDLRQAT-DPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSNGSTSTGNNGGSIKALLYTANAENPNFHHPTT--LEEAAHIVAWSRGPSGENKEYLFEVDAYLR--RVGAECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILVGTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQLGRRQVHGAVQTQEDEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAIVTDEDRLYLWGWNEKGQVGGGKHTILDGTRCVRVFPRR------VAMVALGHAHTLVLEKDTGKIYGIGANAAEEATGSSSCSSTCRAIGGVPVTLSGAFGGGKEQLRFSWCAAGVRHSAGVTQDGRLVTWGSNKYGEGLPVSVRSWAPGDGGRVVKVCCGXXXXXXXXXXXXXXXXXXXXXXQLGWGWKEEMGREDEVAGLPQQVQWPTAVDEGGEGRW-VEDVACGWSH--VLAKTRDGQ--VWGWGRNTFGQLAQESRNTAIAAAAAGNLFPRRLLPLPGCLPHGARVREIACGTESSALVGDDGSVWACGWNEHGNLGVGDKKDRGVWTRVLG----FPTREEEGAARMLVACGGAHVLAVK 702
            +ST+TS P +         WD    ++VG       A+ +  ++    L +FGYGSL + P     A   V        G+RR WAQ+S DHRG P  PG+V T+L D E+    LR    D P+   G+ Y +P E V   L ELDFREKGGY R V++V+   +         G  ++ALLY    +NP         L  AA I++ + GPSG N EYL ++D +L      ++ E+ F  T  +   + K   R  +L                                   +A GSNQH QL  +   G +   ED      S   V          +   +AT +           AGGGHSA++T E +LYLWGWNE GQ+G G + + D +  + + P R      V  VALG +HTLVLE+ TGK++G G N+  +  G        +AI     T    +    + + F   AAG+ HSA VT+DG+L+T+G  K+G+ L  S  SW P D  +V++V CG    XXXXXXXXXXXXXXXX  QLG   ++ + R D           P  VD   +  W V+ + CGWSH  VLA+  D Q  VWGWGRN  GQL                L     +  P  L     V  + CG+ES+ LV  +  +W+CGWNEHGNL  G  +D    TR +G          E  +R+ VA GGAHV+A++
Sbjct:   31 LSTTTSRPMQLNIEEGTPIWDPVAQIYVGGIVPEHAAVQELIEQNHGCLRLFGYGSLCWNPGSGVLAHPSVHHRPAKARGYRRCWAQKSTDHRGVPSFPGIVCTLLKDDEVR--QLRSLDYDSPTFTEGLVYEVPSELVDECLAELDFREKGGYARDVIDVIDDQT---------GQVLQALLYRGTLDNPAIWPRVLRYLPFAAAIMSVAVGPSGANHEYLHQLDDFLESSTTASQMEQLFDDT-YILSSMTKSFQRDATL--------------------------------FFFVAAGSNQHNQLLLKDAVGNLHQGEDAHVMTESVLCVS---------RRSDVATGIY----------AGGGHSALLTQEGQLYLWGWNEHGQLGRGDNVVSDSS--LPIHPIRPLAQIVVDQVALGFSHTLVLERGTGKLFGFGDNSRGQVNGQIE----RKAISIFEPTEVALY----KDVIFKEVAAGLFHSACVTKDGQLITFGCRKFGQCLEGS--SWTPSD-SKVIQVACGRRHTXXXXXXXXXXXXXXXXYGQLG---RQSVDRSDPT---------PRLVDV--DSTWTVQAIHCGWSHTVVLAQNADNQTIVWGWGRNDKGQL---------------GLADTSCVTRPRLLFKDHSVVSLDCGSESTILVDAEDRIWSCGWNEHGNLADGSTEDAHQLTRAIGASVPLTPGTPEDTSRLRVAAGGAHVIAMR 662          
BLAST of NO12G01390 vs. NCBI_GenBank
Match: GAX23659.1 (hypothetical protein FisN_12Hh233 [Fistulifera solaris])

HSP 1 Score: 286.6 bits (732), Expect = 2.100e-73
Identity = 248/715 (34.69%), Postives = 337/715 (47.13%), Query Frame = 0
Query:   12 WDAAQGVWVGS-----RALADEADEIPDPLYIFGYGSLMFRPQE---SFAACERVGGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAELEGMDLRQAT-DPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSNGSTSTGNNGGSIKALLYTANAENPNFHHPTTLEE---AAHIVAWSRGPSGENKEYLFEVDAYLRRVGAECE-ETFLLTRRVKEVLEKGLDRRGSLDARHRQILVGTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQLGRRQVHGAVQTQEDEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAIVTDEDRLYLWGWNEKGQVG---GGKHTILDGTRCVRVFPRRVAMVALGHAHTLVLEKDTGKIYGIGANAAEEATGSSSCSSTCRAIGGVPVTLSGAFGGGKEQLRFSWCAAGVRHSAGVTQDGRLVTWGSNKYGEGLPVSVRSWAPGDGGRVVKVCCGXXXXXXXXXXXXXXXXXXXXXXQLGWGWKEEMGREDEVAGLPQQVQWPTAVDEGGEGRWVEDVACGWSH--VLAKTRDGQ--VWGWGRNTFGQLAQESRNTAIAAAAAGNLFPRRLLPLPGCLPHGARVREIACGTESSALVGDDGSVWACGWNEHGNLGVGDKKDRGVWTRVLG-----FPTREEEGAARMLVACGGAHVLAVK 702
            WD    ++VG       A+ +  ++    L +FGYGSL + P     + A+         G+RR WAQ+S DHRG P  PG+V T+L D E+    LR    D P+   G+ Y +P E V   L ELDFREKGGY R V++V+   +         G  ++ALLY    +NP    P  L +   AA +++ + GPSG N EYL ++DA+L    A  + E       +   + K   R  +L                                   +A GSNQH QL  +   G +   ED  +   S   +          +    +T +           AGGGHSA++T E RLYLWGWNE GQ+G   G   + L       +    V  VALG +HTLVLE+ TGK++  G N+  +  G     S       + +  +      K  + F   AAG+ HSA VT+DG+L+T+G  K+G+ L  S  SW P D   +++V CG   XXXXXXXXXXXXXXXXXX QLG   +E   + D   GL         V+ G   R V+ + CGWSH  VLA+  D Q  VWGWGRN  GQL     +            P  L        H A +  + CG+ES+ LV     +W CGWNEHGNL  G   D    T+ LG      P   E+  +R+ VA GGAHV+A++
Sbjct:   52 WDPVAQIYVGGIVPEHAAVQELIEQNQGCLRLFGYGSLCWNPGAGALAHASVHHRPAKARGYRRCWAQKSTDHRGVPSFPGIVCTLLKDQEVR--QLRSLDYDSPTFTEGLVYEVPSELVDECLAELDFREKGGYARDVIDVIDDQT---------GDVLQALLYRGTLDNPAI-WPRVLRDLPFAAAVLSVAVGPSGTNHEYLHQLDAFLESSTAASQMEQLFDDTYILSSMTKTFQRDATL--------------------------------FFFVAAGSNQHNQLLLKDAVGDLHQGEDVYFMTESVLCIS---------RRSDPSTGIY----------AGGGHSALLTQEGRLYLWGWNEHGQLGMTPGVSDSPLPIRPIQPLAQIVVDKVALGFSHTLVLERGTGKLFAFGDNSRGQVNGQIDKKS-------LSIFEAKEIALYKNDM-FKEVAAGLFHSACVTKDGQLITFGCRKFGQCLEGS--SWTPSDSS-ILQVVCGRRHXXXXXXXXXXXXXXXXXXGQLG---RETRNKADPSPGL---------VEMGSTWR-VQTIHCGWSHTVVLAQNDDNQTVVWGWGRNDKGQLGLADTSCVTR--------PTYLFQ-----DHSAAIESLDCGSESTVLVDAKDRIWGCGWNEHGNLANGSTDDAHQLTQALGALVPLIPGYPED-ISRLRVAAGGAHVIAMR 665          
BLAST of NO12G01390 vs. NCBI_GenBank
Match: XP_002181288.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47211.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 283.1 bits (723), Expect = 2.400e-72
Identity = 226/727 (31.09%), Postives = 329/727 (45.25%), Query Frame = 0
Query:   12 WDAAQGVWVG-----SRALADEADEIPDPLYIFGYGSLMFRPQESFAACERV---GGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAELEGMDLRQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSNGSTSTGNNGGSIKALLYTANAENPNFHHPTTL--------EEAAHIVAWSRGPSGENKEYLFEVDAYLRRVGA-----ECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILVGTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQLGRRQVHGAVQTQEDEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAIVTDEDRLYLWGWNEKGQVGGGKHT----ILDGTRCVRVFPRRVAMVALGHAHTLVLEKDTGKIYGIGANAAEEATGSSSCSSTCRAIGGVPVTLSGAFGGGKEQLRFSWCAAGVRHSAGVTQDGRLVTWGSNKYGEGLPVSVR-----SWAPGDGGRVVKVCCGXXXXXXXXXXXXXXXXXXXXXXQLGWGWKEEMGREDEVAGLPQQVQWPTAVDEGGEGRWVEDVACGWSHVLAKTRDGQ----VWGWGRNTFGQLAQESRNTAIAAAAAGNLFPRRLLPLPGCLPHGARVREIACGTESSALVGDDGSVWACGWNEHGNLGVGDKKDRGVWTRVLGFPTREEEG---AARMLVACGGAHVLAVK 702
            WD  Q ++ G     +  + D   E    L +FGYGSL + P     A   V    G   G+RR WAQ+S DHRG P  PG+V T+L D E     L    D  +   G+ + +P   V   L ELDFREKGGY R ++EV+   S         G  ++ALLY    +NP F  P  L        E    I+A + GPSGEN+ YL  +D +L +V +     + ++T +L    K++  + L             + G+                           GSNQ  QL  +  + A     +E+        +  D             T  ++ +  +  L AGGGHSAI+    RL+L+G NE  Q+G    T     L    C+R     ++  +LG +H+LV+EK+TG++Y  G NA  +A    +C+ST      +P+         KE +   +  AGV HSA V++DG L+TWG  ++G+ LPV VR      W P DG RV+ V CG                      QLG   K E     + + +P  V      D G +   V  V CGWSH + +  +G+    ++GWGRN  GQL   + +            P RL P         ++R +ACG+ES+A+V  DG +W+CGWNEHGNLG+G   D    T++ G P     G    + + +A GGAH++A++
Sbjct:   11 WDPIQQIYTGGVLPQTVEIQDLIAENNGTLRLFGYGSLCWNPGTGALADPSVRYAPGQARGYRRCWAQKSTDHRGLPCFPGIVCTLLKDQEFREF-LSSGVDEETLTEGLIFEVPPPLVEECLAELDFREKGGYARDIIEVVEDKS---------GKVVQALLYRGTPQNPAF-WPRALRDLPFAAGESLQTIMATAIGPSGENEVYLSRLDHFLGKVASGSTLKKYDDTLVLASMTKQLRNQNL-----------HFMFGS---------------------------GSNQRNQLLLQTENNAAALFNNEDAHEMKEIVLCAD------------QTDKIEVNEKVISLFAGGGHSAILMQSGRLFLFGSNEHSQLGASGITQSSFPLPILTCLR--DLFISYCSLGFSHSLVVEKETGRVYSFGDNARGQA-DPDNCASTIPLPTALPL---------KEHIVAVF--AGVFHSAAVSEDGELITWGCGRFGQCLPV-VRHRLYGHWKPDDGSRVLGVACGRRHTVTFDDRGRVWSFGENKYGQLGRDLKGE-----KYSRVPSLVDG----DWGLDSLSVTGVHCGWSHTILQLENGKGELILFGWGRNDKGQLGVGTSSIVFN--------PVRLYP-------SHKIRLVACGSESTAIVDTDGEIWSCGWNEHGNLGLGHDFDAFELTKIKGAPITLTPGYSEKSSLGLALGGAHMIAMR 637          
BLAST of NO12G01390 vs. NCBI_GenBank
Match: EJK65722.1 (hypothetical protein THAOC_13394 [Thalassiosira oceanica])

HSP 1 Score: 275.8 bits (704), Expect = 3.800e-70
Identity = 235/750 (31.33%), Postives = 322/750 (42.93%), Query Frame = 0
Query:   12 WDAAQGVWVG----SRALADEADEI----PDPLYIFGYGSLMFRP-------------QESFAACERV----GGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAE---LEGMDLRQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSNGSTSTGNNGGSIKALLYTANAENPNFHHPTTLEE--AAHIVAWSRGPSGENKEYLFEVDAYLRRVGAECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILVGTAKGEGEGKGEPARGSGAVWQQLR---LLAWGSNQHGQLGRRQVHGAVQTQEDEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAIVTDEDRLYLWGWNEKGQVGGGKHTI---LDGTR----CVRVFPRRVAMVALGHAHTLVLEKDTGKIYGIGANAAEEATGSSSCSSTCRAIGGVPVTLSGAFGGGKEQLRFSWCAAGVRHSAGVTQDGRLVTWGSNKYGEGLPVS----------VRSWAPGDGGRVVKVCCGXXXXXXXXXXXXXXXXXXXXXXQLGWGWKEEMGREDEVAGLPQQVQWPTAVDEGGEGRWVEDVACGWSHVLAKTRDG-----QVWGWGRNTFGQLAQESRNTAIAAAAAGNLFPRRLLPLPGCLPHG-ARVREIACGTESSALVGDDGSVWACGWNEHGNLGVG--DKKDRGVWTRVLGFPTREEEGAA----RMLVACGGAHVLA 700
            WD     + G    SR  A   D++       L IFGYGSL + P             Q+       V    G    G+RR WAQRS DHRG P   G+V T+LSD E   L+G D      P S   G+ Y +        L ELDFREKGGY R V++V+             G +++ALLY    +NP F     L+   AA +++ + GPSG N  YL  +D             FL         + G +  G                  +  GE AR  G++    R   L   GSN+HGQL    V G      D+     +  + ++     V+ +         D       L AGGGHSA++T   RL+LWGWN  GQ+G     +    D TR     V     +VA   LGH+HT+V+E+DTG+++  G +   + +G+++ SST       P T  G      E   F   AAG+ H+AGVT+ G LVTWG  ++G+ L  S          V  W P DG  + KV CG                       LG     ++GR  +  G P +   P     G  G    +V CGWSH +A  RDG     +V GWGR   GQL  E  + ++ +       P RL   P     G A VR   CG ES+ +   +G V++ GWNEHGNLG+G  + +    W R  G        +A     +L+A GGAH ++
Sbjct:   66 WDPETQTYAGGVVPSRDAAASIDDLLAENGGRLRIFGYGSLCWHPGSEGVLSLAGRKTQQGEEGRPMVTTAPGPGPVGYRRCWAQRSADHRGTPSFNGIVCTLLSDGEVRKLQGGDPADGKHPVSSTEGLIYTVDPSLANRCLSELDFREKGGYARDVIDVV---------EDGTGETVRALLYRGTPDNPAFWRRALLDMPLAAAVMSVAEGPSGRNDAYLLSLD------------EFLTAHNQPRGSDGGPNHSGD-----------------DATGELARMVGSLQTDFRPYFLFGAGSNEHGQLLLNGVPG------DDNGSESTKEAHEVSEVLLVTPRDDK------DEDHEASSLHAGGGHSALLTGGGRLHLWGWNGAGQLGREGAFLEEEADDTRSLFDVVPPLGMKVAAADLGHSHTVVIERDTGRVFCFGDDGRGQVSGATNSSSTPLPAQSAPRTPVGL-----ESEFFVDVAAGLFHTAGVTRGGELVTWGCGRFGQCLVPSESDDRAASSTVGRWRPPDGVGLEKVACG--------RRHTIALDVEGRVWSLGDNRHGQLGRRSDGGG-PSREPSPVDGPLGQAGSGCFEVHCGWSHAVALVRDGIAGSVEVHGWGRADRGQLGFECEDGSVPS-------PTRLAAGPSGSDGGVAAVRSACCGAESTHVADSNGVVYSTGWNEHGNLGIGRAEAEHCMTWRRTSGAKAVSPPSSASKDWEILIAAGGAHFIS 744          
BLAST of NO12G01390 vs. NCBI_GenBank
Match: OEU15155.1 (RCC1/BLIP-II protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 239.2 bits (609), Expect = 3.900e-59
Identity = 229/759 (30.17%), Postives = 309/759 (40.71%), Query Frame = 0
Query:    1 MSTSTSTPSRQ-WDAAQGVWVGS-------RALADEADEIPDPLYIFGYGSLMFRPQESFAACERVG-----GVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAE-----------LEGMDLRQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSNGSTSTGNNGGSIKALLYTANAENPNFHHPTTLE--EAAHIVAWSRGPSGENKEYLFEVDAYLRRVGAECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILVGTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQ-LGRRQVHGAVQTQEDEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAIVTDEDRLYLWGWNEKGQVGGGKHTILDGTRCVRVFP-------RRVAMVALGHAHTLVLEKDTGKIYGIGANAAEEATGSSSCSSTCRAIGGVPVTLSGAFGGGKEQLRFSWCAAGVRHSAGVTQDGRLVTWGSNKYG---------------EGLPVSVRSWAPGDGGRVVKVCCGXXXXXXXXXXXXXXXXXXXXXXQLGWGWKEEMGREDEVAGLPQQVQWPTAVDEGGEGRWVEDVACGWSHVLAKTRD-----GQVWGWGRNTFGQLAQESRNTAIAAAAAGNLFPRRLLPLPGCLPHGARVREIACGTESSALVGDDGSVWACGWNEHGNLGVGDKKDRGVWTRVLGF-------PTREEEGAARMLVACGGAHVL 699
            MST  +T     W     ++VG        R L +E+D     L IFGYGSL + P  +  A  + G     G   G++R WAQRS DHRG P  PG+V T+L+  E            +    R+  D      GV + +P E V   L+ELDFREKGGY R V EV+   S           S KALLY    ENP F     L+   +A I++ S GPSG N  YL  ++ +L    A   ET  LT  ++   E+                                     +Q   L   GSNQH Q L  R  + A    ED         S  L      +  G     + VD       + AGGGHSAI+T   RL+LWGWNE  Q  G K T+  G +  ++ P         V  V+LG +HTLV+EK+TG++Y  G N   + TG       C+A     ++ S    G           AG+ HSA +T  G L+T+G N++G               E L    R W P +  RV  V  G                      QLG   +E       +          T  D  G+   V  V CG+SH + + R       + +G+GRN  GQL   S N  +        FP +L            +R I CG+ES+ ++  +G ++ CGWNEHGN G G ++     T  L         P  EE   A   +A GGAH +
Sbjct:    1 MSTGVTTSEGPIWCEKNQIYVGGVPENEEVRKLIEESD---GHLRIFGYGSLCWSPGAA-GALSKTGVTTSLGFCMGYKRTWAQRSTDHRGTPKFPGIVCTLLTKQEHASVVASAESFSKSSSDRETADSLCLTEGVIFNVPPELVQETLEELDFREKGGYARDVCEVVEEESK---------KSYKALLYRGTPENPAFSSRALLDLPFSAAIMSVSVGPSGANDIYLNNLNKFLSETYA--TETKTLTDMLRSFQEE-------------------------------------YQLYFLSGGGSNQHNQLLLNRPNNSAFLVGEDAHTRKEIVLSTSLH-----TDDGPKQLCSPVD-------VFAGGGHSAILTKNGRLFLWGWNEDLQC-GSKSTVSLGNKNDQLLPFIEPLSNISVEKVSLGFSHTLVVEKETGRLYAFGNNERGQVTG-------CQAASVRDISTSPMTPGFLIDEEIDIVEAGMFHSAVITTRGELITFGCNRFGQSNFLEEGGNVLDAPESLTYKYRRWKPPNADRVFDVALGRRHTVVVDSLNRIWTFGENKHGQLGRKTRESKCCTPSIV---------TMEDTVGKDDTV-SVHCGFSHTIIQVRSREGNRNRFYGFGRNDQGQLGNGS-NVQVN-------FPIQLF-------SDNNIRTIQCGSESTMVIDTEGQLYGCGWNEHGNCGTGAQETENCLTLSLTRGSKCYTPPDMEESDIA---LAVGGAHFI 659          
BLAST of NO12G01390 vs. NCBI_GenBank
Match: CBJ30967.1 (ChaC-like protein [Ectocarpus siliculosus])

HSP 1 Score: 229.6 bits (584), Expect = 3.100e-56
Identity = 114/208 (54.81%), Postives = 140/208 (67.31%), Query Frame = 0
Query:   12 WDAAQGVWVGSRALADEADEIPDPLYIFGYGSLMFRPQESFAACERVGGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAELEGMDLRQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSNG-----STSTGNNGGSIKALLYTANAENPNFHHPTTLEEAAHIVAWSRGPSGENKEYLFEVDAYLRRVG 215
            WDA  GVWVG RA   E   +P PL+IFGYGSL +RP+ SFA  ER  G V GW+R++AQ+S DHRG P  PGLV T++SDA+LE +  R A+DPPSR HGVAY IP+ +   VL  LDFREKGGYTRA V+VLP    G     +TS+ +      ALLYT    NPNFH P +++EAA  +A + GPSG N EYLF +  YL +VG
Sbjct:   31 WDADAGVWVGDRAAGQEG-SVPSPLWIFGYGSLCWRPEASFAGFERFNGEVVGWKRLFAQKSMDHRGTPEFPGLVATLVSDADLEALGQRSASDPPSRTHGVAYLIPENKAEEVLAGLDFREKGGYTRATVDVLPAGGEGGQKEDTTSSEDTAVPTPALLYTGTTSNPNFHVP-SIDEAADTIALAVGPSGPNYEYLFSLSQYLEKVG 236          
BLAST of NO12G01390 vs. NCBI_GenBank
Match: XP_002291639.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91746.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 190.7 bits (483), Expect = 1.600e-44
Identity = 180/643 (27.99%), Postives = 252/643 (39.19%), Query Frame = 0
Query:   36 LYIFGYGSLMFRPQE----SFAACER------------------VGGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAEL-----EGMDLRQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSNGSTSTGNNGGSIKALLYTANAENPNFHHPTTLEEAAHIVAWSRGPSGENKEYLFEVDAYLRRVGAECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILVGTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQLGRRQVHGAVQTQEDEEWPCPSPTSVDLDVAGTVSFQGGSLAT-ALVDHHLTIRQLAAGGGHSAIVTDEDRLYLWGWNEKGQVGGGKHTILDGTRCVRVFPR---RVAMVALGHAHTLVLEKDTGKIYGIGANAAEEATGSSSCSSTCRAIGGVPVTLSGAFGGGKEQLRFSWCAAGVRHSAGVTQDGRLVTWGSNKYGEGLP-----VSVRSWAPGDGGRVVKVCCGXXXXXXXXXXXXXXXXXXXXXXQLGWGWK-------EEMGREDEV-AGLPQQVQWPTAVDEGGEGRWVEDVACGWSHVLA--KTRDGQV-WGWGRNTFGQLAQESRNTAIAAAAAGNLFPRRLLPLPGCLPHGARVR 632
            L IFGYGSL + P      S    E                     G   G++R WAQRS DHRG P   G+V T+LSD E+     +G   +Q T  PS   G+ Y I  E V   L ELDFREKGGY R V++V+   +         G ++KALLY    ENP F              W R                                                                            V+  L   A GSN+H QL                   PS T  + +V          L T  L D    +  L AGGGHSA++T    ++ WGWN+ GQ+G   +   D    +   P    ++A+  LGH HTLV+EKDTG+++G G N   +  G  + ++   ++   P T SG         +F   AAG+ HSA +T DG LVT+G +++ + LP      S+  W P DG ++V+V CG                       LG  W         ++GR   + +  PQ V  P      G       +  GWSH+LA  + +DG V +GWGRN  GQL +++    IA          +++ +P C+ +   V+
Sbjct:   62 LRIFGYGSLCWHPGSEGVLSLGNIEEDEHDHEVHNTKPKKKVTTTPGRAIGYQRCWAQRSADHRGTPSFNGIVCTLLSDEEVWELHHKGSHSKQ-TLRPSMTEGLIYTIDKELVDDCLAELDFREKGGYARDVIDVVEDET---------GNTVKALLYRGTPENPAF--------------WKR----------------------------------------------------------------------------VFMDLTYAA-GSNEHNQL----------------LLSPSETDNNSEVNEVHELTEMLLVTLRLQDEADELVSLHAGGGHSALLTKSGAMHTWGWNDAGQLGRLNNPQEDSVSSLANVPPLSIKIAVADLGHTHTLVIEKDTGRLFGFGENGRGQVDGLVNSNAVTTSM-HTPTTPSGLI-----DEQFVEVAAGLFHSAAITVDGDLVTFGCSRFRQSLPPDNDTSSIGRWRPSDGSKLVQVTCG--------------RRHTVMLDDLGRVWTLGLENKYGQLGRSKSLDSPTPQLVDGPLGQPNSG----CVVLTSGWSHILALIRKKDGTVLYGWGRNDKGQLGKQNETDFIATP--------QVIDVPSCIANSFSVQ 555          
BLAST of NO12G01390 vs. NCBI_GenBank
Match: CEM01875.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 167.5 bits (423), Expect = 1.500e-37
Identity = 91/222 (40.99%), Postives = 128/222 (57.66%), Query Frame = 0
Query:   12 WDAAQGVWVGSRALADEADEIPDPLYIFGYGSLMFRPQESFAACERVGGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAELEGMDLRQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSNGSTSTGNNGGSIKALLYTANAENPNF-----HHPTTLEEAAHIVAWSRGPSGENKEYLFEVDAYLRRVGAECEETFLLTRRVK 229
            WD+  GVWVGSRA AD++  +P PL++FGYGSL ++    +   E+  G ++G+ R + Q S DHRG P  PG VVT++  A    + L +A      VHGVAYRIPDE+V  VLD LD+REKGGY+R +++V    ++G       G  + AL Y  N  NP +          L++AAH +  S GPSG N+EYL+ +  +L  +         L RRV+
Sbjct:   15 WDSTLGVWVGSRARADDSFVVPSPLWLFGYGSLCWKADVPYE--EQFVGFIQGYERKFFQASMDHRGTPASPGRVVTLVKHAHPASVPLSEA---EGLVHGVAYRIPDERVEEVLDALDYREKGGYSRLLLDVTEWCADGK----EGGRRVTALAYCGNETNPAYDAFDDESDEGLQQAAHRIFSSTGPSGPNREYLYRLGDFLEAIKVHDRHVAELVRRVR 227          
BLAST of NO12G01390 vs. NCBI_GenBank
Match: XP_009040467.1 (hypothetical protein AURANDRAFT_31828 [Aureococcus anophagefferens] >EGB04911.1 hypothetical protein AURANDRAFT_31828 [Aureococcus anophagefferens])

HSP 1 Score: 160.2 bits (404), Expect = 2.300e-35
Identity = 91/222 (40.99%), Postives = 127/222 (57.21%), Query Frame = 0
Query:   11 QWDAAQGVWVGSRALADEADEIPDPLYIFGYGSLMFRPQESFAACERVGGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAELEGMDLRQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSNGSTSTGNNGGSIKALLYTANAENPNF------HHPTTLEEAAHIVAWSRGPSGENKEYLFEV-------DAYLRRVGAECEE 220
            +WDAA GV+  +RA +  + E+P+PL+IFGYGSL++RP+E ++  +     V GWRR +AQ S DHRG P  PGLV T+L DA            P +   GVAYR+PD     VLD+LDFREKGGYTR +  V+           ++G ++ AL+Y+A  +NPNF           +++AA I+A + GPSG+N  YL  +       D YL  + A   E
Sbjct:    4 EWDAAAGVYKNARAAS--SCEVPNPLWIFGYGSLVWRPEERWSDYDARPCAVRGWRRYFAQLSTDHRGVPGAPGLVCTLLEDA------------PEATTRGVAYRVPDADADAVLDDLDFREKGGYTRKIARVV----------FDDGEAVDALVYSATRDNPNFVQGLDSDDAAAVDKAARIIATAVGPSGDNAAYLLNLADALEGTDPYLAALKARVVE 201          
The following BLAST results are available for this feature:
BLAST of NO12G01390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25894.12.900e-21162.44retinitis pigmentosa gtpase regulator [Nannochloro... [more]
GAX15070.11.100e-7734.74hypothetical protein FisN_12Lh233 [Fistulifera sol... [more]
GAX23659.12.100e-7334.69hypothetical protein FisN_12Hh233 [Fistulifera sol... [more]
XP_002181288.12.400e-7231.09predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK65722.13.800e-7031.33hypothetical protein THAOC_13394 [Thalassiosira oc... [more]
OEU15155.13.900e-5930.17RCC1/BLIP-II protein [Fragilariopsis cylindrus CCM... [more]
CBJ30967.13.100e-5654.81ChaC-like protein [Ectocarpus siliculosus][more]
XP_002291639.11.600e-4427.99predicted protein [Thalassiosira pseudonana CCMP13... [more]
CEM01875.11.500e-3740.99unnamed protein product [Vitrella brassicaformis C... [more]
XP_009040467.12.300e-3540.99hypothetical protein AURANDRAFT_31828 [Aureococcus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01390.1NO12G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592049gene_5297Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01390.1NO12G01390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01390 ID=NO12G01390|Name=NO12G01390|organism=Nannochloropsis oceanica|type=gene|length=2136bp
ATGTCCACATCCACGAGTACACCCTCACGGCAATGGGACGCGGCCCAAGG
TGTGTGGGTTGGCTCGCGAGCGCTGGCGGACGAGGCGGATGAAATTCCAG
ACCCACTGTACATTTTTGGGTACGGCTCGCTCATGTTTCGGCCCCAAGAA
AGCTTTGCCGCTTGTGAGCGTGTAGGTGGCGTGGTGGAGGGTTGGCGGCG
GGTATGGGCGCAGCGGAGTTGTGATCATAGAGGGGAGCCGCACATGCCCG
GACTCGTTGTGACGGTCTTGAGCGACGCTGAGCTGGAAGGTATGGATCTA
CGGCAGGCGACGGACCCACCATCCCGCGTGCATGGTGTCGCGTACCGCAT
TCCGGACGAGCAGGTGGCTCACGTGTTGGACGAACTGGATTTTCGGGAAA
AGGGTGGGTATACGCGGGCGGTGGTGGAAGTGCTTCCTACTCATTCGAAC
GGCAGCACCAGCACTGGCAATAACGGCGGCTCTATCAAAGCTTTGTTATA
CACAGCCAACGCCGAAAACCCCAATTTCCATCATCCCACCACGTTAGAGG
AAGCCGCACACATTGTCGCCTGGTCACGTGGACCGTCGGGCGAAAACAAG
GAGTATTTATTCGAGGTGGATGCTTACTTGCGGCGGGTCGGCGCGGAGTG
CGAGGAGACCTTTCTGCTGACGAGACGGGTGAAGGAGGTGTTGGAGAAGG
GGCTGGACAGGAGGGGAAGTTTGGATGCACGGCACCGGCAGATCCTGGTT
GGGACAGCGAAAGGAGAAGGAGAAGGGAAAGGAGAGCCAGCGAGAGGAAG
TGGGGCAGTATGGCAGCAGCTGAGACTTCTGGCGTGGGGGTCGAATCAAC
ATGGACAGCTAGGAAGAAGGCAGGTGCATGGCGCGGTGCAGACGCAAGAA
GATGAAGAATGGCCCTGTCCGTCACCGACTTCGGTGGATTTAGACGTCGC
CGGGACTGTCTCCTTCCAGGGAGGCTCCCTCGCTACAGCTCTGGTCGACC
ACCACCTCACCATCCGTCAGCTCGCGGCAGGCGGGGGACACAGTGCGATC
GTCACGGACGAAGACAGATTGTACCTCTGGGGATGGAATGAAAAAGGGCA
AGTGGGTGGAGGGAAGCACACAATATTAGATGGTACCCGTTGTGTGCGTG
TCTTCCCTCGACGCGTGGCAATGGTTGCATTGGGGCACGCACATACGTTG
GTCTTGGAGAAGGACACGGGGAAGATTTATGGCATCGGGGCGAACGCTGC
AGAGGAAGCGACAGGGAGCAGCAGCTGTAGCAGCACTTGCCGTGCGATAG
GTGGAGTGCCGGTGACCCTTTCAGGTGCTTTTGGAGGTGGTAAGGAACAG
CTTCGTTTCAGTTGGTGCGCGGCGGGCGTTCGACACTCGGCGGGAGTGAC
GCAGGATGGTCGGCTCGTCACATGGGGTTCGAATAAATATGGAGAGGGGC
TGCCGGTTTCCGTGAGGAGCTGGGCGCCGGGAGATGGAGGGAGGGTGGTG
AAGGTGTGTTGTGGATGGCAGCACACGGTGGTGTTGGATGATCGAGGGCG
GGTGTGGACGATGGGGGCGAATAAATATGGGCAGTTGGGATGGGGGTGGA
AAGAGGAGATGGGGAGGGAGGACGAGGTTGCGGGATTACCGCAGCAGGTC
CAATGGCCTACGGCAGTAGATGAGGGGGGGGAGGGGAGGTGGGTGGAGGA
TGTGGCGTGTGGATGGTCGCATGTACTAGCCAAGACCCGCGATGGGCAGG
TTTGGGGGTGGGGTCGCAATACGTTTGGACAGTTGGCGCAGGAGTCCAGG
AATACAGCAATTGCTGCAGCAGCAGCAGGCAATTTGTTTCCACGCCGTTT
ATTACCATTGCCTGGATGCCTGCCTCATGGGGCGAGGGTGCGGGAGATTG
CATGTGGGACGGAAAGTAGTGCGCTGGTGGGGGATGACGGGTCGGTGTGG
GCGTGTGGCTGGAATGAGCATGGAAATTTAGGGGTGGGAGATAAGAAGGA
CCGAGGAGTTTGGACTAGGGTGCTGGGCTTTCCTACTCGGGAGGAGGAGG
GGGCAGCAAGGATGCTGGTAGCTTGCGGTGGGGCACATGTTCTGGCGGTA
AAGGAAAGAGTGGGTTTACAAACGGAGGAGAAATGA
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protein sequence of NO12G01390.1

>NO12G01390.1-protein ID=NO12G01390.1-protein|Name=NO12G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp
MSTSTSTPSRQWDAAQGVWVGSRALADEADEIPDPLYIFGYGSLMFRPQE
SFAACERVGGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAELEGMDL
RQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSN
GSTSTGNNGGSIKALLYTANAENPNFHHPTTLEEAAHIVAWSRGPSGENK
EYLFEVDAYLRRVGAECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILV
GTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQLGRRQVHGAVQTQE
DEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAI
VTDEDRLYLWGWNEKGQVGGGKHTILDGTRCVRVFPRRVAMVALGHAHTL
VLEKDTGKIYGIGANAAEEATGSSSCSSTCRAIGGVPVTLSGAFGGGKEQ
LRFSWCAAGVRHSAGVTQDGRLVTWGSNKYGEGLPVSVRSWAPGDGGRVV
KVCCGWQHTVVLDDRGRVWTMGANKYGQLGWGWKEEMGREDEVAGLPQQV
QWPTAVDEGGEGRWVEDVACGWSHVLAKTRDGQVWGWGRNTFGQLAQESR
NTAIAAAAAGNLFPRRLLPLPGCLPHGARVREIACGTESSALVGDDGSVW
ACGWNEHGNLGVGDKKDRGVWTRVLGFPTREEEGAARMLVACGGAHVLAV
KERVGLQTEEK*
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Synonyms
Publications