|
|
Properties
| Property Name | Value |
|---|
| Description | Unknown protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr12 | genome | chr12:427746..432276 + |
Analyses
This gene is derived from or has results from the following analyses
Homology
BLAST of NO12G01380 vs. NCBI_GenBank
Match: EWM25914.1 (hypothetical protein Naga_100048g32 [Nannochloropsis gaditana]) HSP 1 Score: 246.5 bits (628), Expect = 1.400e-61 Identity = 164/334 (49.10%), Postives = 208/334 (62.28%), Query Frame = 0
Query: 75 MDTFDYRHVSKVQGLPVEGLPGLYSFPIDGSTISGEFVWQLQLKLSSSTEGVTTVDIHELRVVVESGGGPGISGAGEGSLATTTMLMGDLDLKKSNK------MSTTGEAIKMTTNEMHAPRSSLGGSSSMRTS--GRGMSISDSDANTNSTRKSTTRQPSWPSKGGKSSRTASTPSVSSSDGHATTAGKLSRSTALSAIAMGR---SGGPSPDMVVRGXXXXXXXXXXXXRLVSQSQQQSNALMQQETAAVASVLNAVCEKMVGVVSEKTKAYLAKAGRRTERRVLDKMTKLEQRIEMFDHVLEHATSSSREIERALLALDEDLSSASKPLPV 398
MDTFDYRHV+KVQG PVEGL GLYSF +D +TI E VWQ+QLKLSS+ + +T+VDIH+ V++++ G G G G L+ TT +GDL++ KSN+ M + A +N + RS + + T+ GRG+S +D DA +++ +T H A KLSRST LS+ AMGR SGG + ++V+RG V A+M+QET AVASVLNAVCEKMVGV+SEKTK YLAKAGR+TERRVL+KM KLE+RIE FD+VLEHAT SSREIE+ALLALDE+L S KP PV
Sbjct: 1 MDTFDYRHVTKVQGRPVEGLLGLYSFSVDANTIPREQVWQIQLKLSSNAQQITSVDIHDFSVIIDTLPGSGSVGIGGLPLSNTTTRLGDLNMNKSNRGATSTSMDLSDSARSQASNFYTSTRSMSASTRTAATTKVGRGLSTADRDATRSASHVNTGAPGGSXXXXXXXXXXXXXXXXXVPRAHGNKASKLSRSTELSSSAMGRTGGSGGKTGELVLRG-----GRGEGEREAVVPHTGHDAAVMRQETEAVASVLNAVCEKMVGVMSEKTKLYLAKAGRKTERRVLEKMAKLEERIEKFDNVLEHATLSSREIEQALLALDENLPSPRKPSPV 329
BLAST of NO12G01380 vs. NCBI_GenBank
Match: EWM27581.1 (hypothetical protein Naga_100015g23 [Nannochloropsis gaditana]) HSP 1 Score: 91.7 bits (226), Expect = 5.800e-15 Identity = 50/141 (35.46%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 1 MPFIKSNWTCEPELHENGAFNFGQELAIKDLSLHRGEQT-RPCFLHVSSEVECVVRFLHLVTSVELLDVYALVGPMDT-FDYRHVSKVQGLPVEGLPGLYSFPIDGSTISGEFVWQLQLKLSSSTEGVTTVDIHELRVVVE 140
MP++KSNW+ P L E G F FG+ I +++L + + T R C+LHV+ E + V+ L L+ + + V + G T Y +++ ++G E PGL++F ID S +S VWQLQ+K G ++ I ++ V+VE
Sbjct: 1 MPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQTDPTARACYLHVALEHQARVQELDLICAAPTIVVNLMRGKSTTGMSYTYLTTLKGQTSEEYPGLFAFRIDASLLSHVEVWQLQIKFLFPRVGEKSLLIKKVSVIVE 141
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G01380 ID=NO12G01380|Name=NO12G01380|organism=Nannochloropsis oceanica|type=gene|length=4531bp
CTTGGCAAGCCCCTTCTAGTCCGCACAGGGAGGAGGAAAGGCAACACTCG
AGACTTCTCTACTCAATGAGCACTACGTCGCTCTCTTTCTTTGCCTTGAC
CCGCCCCGCACAATTACAGTCTCTTTTGTCTCGCTCGACTTCGCCCGGCC
CCCTACGCCTTCCTTCCGGCGTCTGACTAACCATTCAGACATCTCTGTCG
ATTCTTACCACGGATAAACAAAAACATGAAATAGGACACAGCACAGTCAT
GCCTTTCATCAAGTCTAATTGGACGTGTGAGCCTGAGCTCCATGAAAATG
GCGCATTCAACTTTGGGCAGGAGTTAGCTATCAAGGACCTGAGCTTGCAC
CGCGGCGAGCAGACACGCCCTTGCTTTTTGCATGgtgagtaaatacggtg
gaacagtatttcttttttatgcgggcgcaggtataaacatgagtgtaatt
agcagcccagggatagagaagaggtctcttacttatcgcccatgcgcaag
agagaagtacgaacgggagcttgaccagcccatatcttaatgatacgctt
tttgacagccgctatgcgtaagcatacatttcgtcggtgatacgcagata
tacttacttcactctacacagtgcccagcctgtgccctccctgtcatcgg
ccttcctatgctatgccccatccctaccgaacaacaatctcattactaca
accccaacccaaaaacaaaacagTGTCCTCCGAAGTCGAATGCGTTGTGC
GATTCCTCCATCTTGTCACCTCCGTGGAGCTCTTAGATGTCTACGCTCTC
GTCGGACCCATGGACACATTTGACTATCGGCACGTCTCAAAAGTGCAAGG
CCTGCCTGTCGAGGGCCTCCCCGGCCTATATTCTTTCCCCATCGACGGAA
GCACGATCTCGGGAGAATTTGTGTGGCAGCTCCAGCTCAAGCTTTCGTCA
AGTACAGAGGGGGTAACGACGGTGGACATTCATGAGTTGCGCGTGGTGGT
TGAGTCGGGGGGTGGGCCTGGAATCTCAGGGGCAGGGGAGGGGTCCTTGG
CGACAACAACCATGTTGATGGGCGACTTAGATTTAAAGAAGAGCAATAAG
ATGTCCACCACGGGAGAGGCCATAAAGATGACGACAAATGAAATGCATGC
GCCGCGTTCGAGTTTGGGGGGGTCCAGTTCCATGCGGACCTCTGGGAGGG
GGATGAGCATCTCTGACTCCGATGCCAACACGAATAGCACCCGTAAAAGC
ACCACCCGACAGCCCAGCTGGCCTAGCAAGGGTGGAAAGAGTTCCAGAAC
AGCTTCCACACCCTCTGTGTCCTCGTCGGATGGGCATGCTACGACGGCGG
GCAAGCTTTCTCGGTCCACCGCACTGTCGGCCATTGCCATGGGTCGCTCG
GGGGGGCCTTCACCTGATATGGTCGTTCGCGGTAATGGGGGTCGCGGGAG
GGGAAGGGGACGGGACGACAGGTTGGTGTCACAGTCGCAGCAGCAGAGTA
ATGCTTTGATGCAACAGGAGACGGCGGCGGTGGCCTCGGTTTTGAATGCT
GTCTGCGAGAAAATGGTTGGGGTTGTCTCAGAGAAGACCAAGGCATACTT
GGCCAAGGCGGGGAGGAGGACGGAGAGAAGGGTGTTGGACAAAATGACGA
AGTTGGAGCAAAGGATTGAGATGTTTGACCATGTGCTTGAGCATGCTACT
AGTAGCTCTCGCGAGATCGAGCGGGCGTTGTTGGCTTTGGACGAGGACTT
GTCGTCTGCAAGCAAGCCGCTTCCCGTGGTGGCGGTGGATGGTGCCCCTT
GAGGCGGAGGGCTGGCAATTTGCGAGTCACTGCGCGCTGAGAGAGAGGAC
AGGAGATGAGAAGGGAGGGAAGAAGGGGGGGAGAAGAGGCGGAATAGGAA
TGTGGAGAAGGCGCATGAATATTACAGCGCGGGCAACGATGATGTGAAGA
CTACGGTACGTAGGAATAGAGCACCTCCCATTGGCCGAGAAAATGATTAG
CAAGAGATACGTCGACGAAAACACATACACGCAAATGTAAAGAAAAAAAT
ATTTAAATATCTCCCTGAATATTTTCTGTTCAATTCCCTGACCATCACAT
CGGTATATTCACTCAATGGCTTTCATCATTTCATTTCTCCTCCGTTTGTA
AACCCACTCTTTCCTTTACCGCCAGAACATGTGCCCCACCGCAAGCTACC
AGCATCCTTGCTGCCCCCTCCTCCTCCCGAGTAGGAAAGCCCAGCACCCT
AGTCCAAACTCCTCGGTCCTTCTTATCTCCCACCCCTAAATTTCCATGCT
CATTCCAGCCACACGCCCACACCGACCCGTCATCCCCCACCAGCGCACTA
CTTTCCGTCCCACATGCAATCTCCCGCACCCTCGCCCCATGAGGCAGGCA
TCCAGGCAATGGTAATAAACGGCGTGGAAACAAATTGCCTGCTGCTGCTG
CAGCAATTGCTGTATTCCTGGACTCCTGCGCCAACTGTCCAAACGTATTG
CGACCCCACCCCCAAACCTGCCCATCGCGGGTCTTGGCTAGTACATGCGA
CCATCCACACGCCACATCCTCCACCCACCTCCCCTCCCCCCCCTCATCTA
CTGCCGTAGGCCATTGGACCTGCTGCGGTAATCCCGCAACCTCGTCCTCC
CTCCCCATCTCCTCTTTCCACCCCCATCCCAACTGCCCATATTTATTCGC
CCCCATCGTCCACACCCGCCCTCGATCATCCAACACCACCGTGTGCTGCC
ATCCACAACACACCTTCACCACCCTCCCTCCATCTCCCGGCGCCCAGCTC
CTCACGGAAACCGGCAGCCCCTCTCCATATTTATTCGAACCCCATGTGAC
GAGCCGACCATCCTGCGTCACTCCCGCCGAGTGTCGAACGCCCGCCGCGC
ACCAACTGAAACGAAGCTGTTCCTTACCACCTCCAAAAGCACCTGAAAGG
GTCACCGGCACTCCACCTATCGCACGGCAAGTGCTGCTACAGCTGCTGCT
CCCTGTCGCTTCCTCTGCAGCGTTCGCCCCGATGCCATAAATCTTCCCCG
TGTCCTTCTCCAAGACCAACGTATGTGCGTGCCCCAATGCAACCATTGCC
ACGCGTCGAGGGAAGACACGCACACAACGGGTACCATCTAATATTGTGTG
CTTCCCTCCACCCACTTGCCCTTTTTCATTCCATCCCCAGAGGTACAATC
TGTCTTCGTCCGTGACGATCGCACTGTGTCCCCCGCCTGCCGCGAGCTGA
CGGATGGTGAGGTGGTGGTCGACCAGAGCTGTAGCGAGGGAGCCTCCCTG
GAAGGAGACAGTCCCGGCGACGTCTAAATCCACCGAAGTCGGTGACGGAC
AGGGCCATTCTTCATCTTCTTGCGTCTGCACCGCGCCATGCACCTGCCTT
CTTCCTAGCTGTCCATGTTGATTCGACCCCCACGCCAGAAGTCTCAGCTG
CTGCCATACTGCCCCACTTCCTCTCGCTGGCTCTCCTTTCCCTTCTCCTT
CTCCTTTCGCTGTCCCAACCAGGATCTGCCGGTGCCGTGCATCCAAACTT
CCCCTCCTGTCCAGCCCCTTCTCCAACACCTCCTTCACCCGTCTCGTCAG
CAGAAAGGTCTCCTCGCACTCCGCGCCGACCCGCCGCAAGTAAGCATCCA
CCTCGAATAAATACTCCTTGTTTTCGCCCGACGGTCCACGTGACCAGGCG
ACAATGTGTGCGGCTTCCTCTAACGTGGTGGGATGATGGAAATTGGGGTT
TTCGGCGTTGGCTGTGTATAACAAAGCTTTGATAGAGCCGCCGTTATTGC
CAGTGCTGGTGCTGCCGTTCGAATGAGTAGGAAGCACTTCCACCACCGCC
CGCGTATACCCACCCTTTTCCCGAAAATCCAGTTCGTCCAACACGTGAGC
CACCTGCTCGTCCGGAATGCGGTACGCGACACCATGCACGCGGGATGGTG
GGTCCGTCGCCTGCCGTAGATCCATACCTTCCAGCTCAGCGTCGCTCAAG
ACCGTCACAACGAGTCCGGGCATGTGCGGCTCCCCTCTATGATCACAACT
CCGCTGCGCCCATACCCGCCGCCAACCCTCCACCACGCCACCTACACGCT
CACAAGCGGCAAAGCTTTCTTGGGGCCGAAACATGAGCGAGCCGTACCCA
AAAATGTACAGTGGGTCTGGAATTTCATCCGCCTCGTCCGCCAGCGCTCG
CGAGCCAACCCACACACCTTGGGCCGCGTCCCATTGCCGTGAGGGTGTAC
TCGTGGATGTGGACATGACGGCGGAAGTGCACGAGGTGGGTGAAAACGGC
GGGTGAAGCCCTGGGGGCAAGGGGTACCGTGGACCTTCTGCTGCCTGACG
GAGAAAGAAAGCACATGCAGTGTTTTCCCCCCTACCGTATATAATCAAGG
ACAACAATAGAAGCGCCCATGGAGGACGGCAGTGTCGTGAAGAGCTAATT
TTCAACCTGTGCTGGTGTGATATGGTGGCGGTGGGAAAAAAAAAGGCACG
GCAGCAAATAACAGCGATTGTGACGAACACT back to topprotein sequence of NO12G01380.1 >NO12G01380.1-protein ID=NO12G01380.1-protein|Name=NO12G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MPFIKSNWTCEPELHENGAFNFGQELAIKDLSLHRGEQTRPCFLHVSSEV
ECVVRFLHLVTSVELLDVYALVGPMDTFDYRHVSKVQGLPVEGLPGLYSF
PIDGSTISGEFVWQLQLKLSSSTEGVTTVDIHELRVVVESGGGPGISGAG
EGSLATTTMLMGDLDLKKSNKMSTTGEAIKMTTNEMHAPRSSLGGSSSMR
TSGRGMSISDSDANTNSTRKSTTRQPSWPSKGGKSSRTASTPSVSSSDGH
ATTAGKLSRSTALSAIAMGRSGGPSPDMVVRGNGGRGRGRGRDDRLVSQS
QQQSNALMQQETAAVASVLNAVCEKMVGVVSEKTKAYLAKAGRRTERRVL
DKMTKLEQRIEMFDHVLEHATSSSREIERALLALDEDLSSASKPLPVVAV
DGAP* back to top
|