NO12G01370, NO12G01370 (gene) Nannochloropsis oceanica

Overview
NameNO12G01370
Unique NameNO12G01370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1984
Alignment locationchr12:425168..427151 +

Link to JBrowse

Properties
Property NameValue
DescriptionGDP-L-fucose synthetase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:425168..427151 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0050662coenzyme binding
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR001509Epimerase_deHydtase_N
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Homology
[Close]
BLAST of NO12G01370 vs. NCBI_GenBank
Match: EWM25919.1 (GDP-L-fucose synthetase [Nannochloropsis gaditana])

HSP 1 Score: 622.5 bits (1604), Expect = 7.500e-175
Identity = 294/321 (91.59%), Postives = 311/321 (96.88%), Query Frame = 0 
Query:    1 MSKNNKKVVLVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRDKAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEACKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQAGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEVSIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTTIEEGLAQTCAWFKENYATARK 322
            MSKNNKKVVL+TGGTGLVGKGIEDF S+DPIA E+E+Y+FLSSKDGDLRDKAQTYAIFEK+RPA V+HLAALVGGLFRNM +KVEFYREN+LINDNVMEACKD KVEKLVSCLSTC+FPDKTTYPIDE+MIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFN+QDGHVIPGL+HKCY AEQAGTDFTIWGSGKPLRQFIYSRDLAELI+WTMREYHSADPLILSVGEEDEVSIGTLA+TVAKAMEFKG VVFDT KADGQYKKTASN KLRSLRPDFRFT+IEEGL +TCAWFKENYATARK
Sbjct:  276 MSKNNKKVVLITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
[Close]
BLAST of NO12G01370 vs. NCBI_GenBank
Match: AUN86413.1 (GDP-fucose pyrophosphorylase [Saccharina japonica])

HSP 1 Score: 489.6 bits (1259), Expect = 7.600e-135
Identity = 223/316 (70.57%), Postives = 264/316 (83.54%), Query Frame = 0 
Query:    6 KKVVLVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRDKAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEACKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQAGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEVSIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTTIEEGLAQTCAWFKENYATARK 322
            KKVV+VTGGTGLVG GI++F  +D  A E E YIFLSSKDGD+R+  +T  IFEKY+P  VIHLAA VGGLF N+K KVEF+REN+LINDNVME C+ +KVEKLVSCLSTC+FPDKTTYPIDE+M+HNGPPH SNEGYAYAKRM+DV++RCYKEEYGCNFTS+IPTNIYG  DNF++ +GHV+PGLIHKCY A+QAG D  +WG+G PLRQFIY+ DL  L++WTMR YH  DP+ILSVGEEDEVSI   A+ +A AM+F+G VVFDTDK+DGQ+KKTA N  L+   PDF+FT ++EGL Q C WF ENY TARK
Sbjct:   12 KKVVMVTGGTGLVGCGIKEFVESDAEAKEKEEYIFLSSKDGDIRNMEETKLIFEKYKPTHVIHLAARVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHVSNEGYAYAKRMIDVLNRCYKEEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMIWTMRNYHEVDPIILSVGEEDEVSIADAAKMIASAMDFEGNVVFDTDKSDGQFKKTACNDLLKQKNPDFKFTPMKEGLKQACEWFCENYETARK 327
[Close]
BLAST of NO12G01370 vs. NCBI_GenBank
Match: CBJ25547.1 (GDP-4-keto-6-deoxy-D-mannose epimerase-reductase [Ectocarpus siliculosus])

HSP 1 Score: 483.8 bits (1244), Expect = 4.100e-133
Identity = 220/312 (70.51%), Postives = 259/312 (83.01%), Query Frame = 0 
Query:   10 LVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRDKAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEACKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQAGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEVSIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTTIEEGLAQTCAWFKENYATARK 322
            +VTGGTGLVG GI++F  TDP A + E YIFLSSKDGDLRD   T AIFEKY+P  VIHLAA VGGLF N+K KVEF+REN+LINDNVME C+ +KVEKLVSCLSTC+FPDKTTYPIDE+M+HNGPPH SNEGYAYAKRM+DV++RCYK EYGCNFTS+IPTNIYG  DNF++ +GHV+PGLIHKCY A+QAG D  +WG+G PLRQFIY+ DL  L++WTMR YH  DP+ILSVGEEDEVSI   A+ +A AM F+G VVFDTDK+DGQ+KKTA N  L+   PDF+FT++++GL   C WF ENY TARK
Sbjct:    1 MVTGGTGLVGCGIKEFVDTDPEAQKNEEYIFLSSKDGDLRDMESTKAIFEKYKPTHVIHLAARVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKGEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMIWTMRNYHEVDPIILSVGEEDEVSIADAAKMIASAMNFEGNVVFDTDKSDGQFKKTACNDLLKKKNPDFKFTSMQDGLKAACDWFCENYETARK 312
[Close]
BLAST of NO12G01370 vs. NCBI_GenBank
Match: XP_002295077.1 (gdp-fucose synthetase [Thalassiosira pseudonana CCMP1335] >EED87857.1 gdp-fucose synthetase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 474.2 bits (1219), Expect = 3.300e-130
Identity = 219/321 (68.22%), Postives = 267/321 (83.18%), Query Frame = 0 
Query:    1 MSKNNKKVVLVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRDKAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEACKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQAGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEVSIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTTIEEGLAQTCAWFKENYATARK 322
            + +  K  ++VTGG+GLVG+ I+ +T  +P+    ET+IFLSSKDGDLRD+ +T AIF++ +P  VIHLAA VGGLF NMK+KVEFYREN LINDN+ME C+ H V KLVS LSTC+FPDKTTYPIDE+M+H+GPPH SNEGYAYAKR++D M+R Y EEYGCNFTSIIPTNIYGP+DNF++++GHVIPGLIHKCY A++ GTDFTIWGSG PLRQFIYS DLAEL VW MR+YHS DP+ LSV E  EV+I  +A  VAKAM+F+GKVVFDT KADGQ+KKTA N KLR LRPD++FT++E+G+ ++  WF ENY TARK
Sbjct:    6 VGRTTKSTIMVTGGSGLVGQAIKTYTLANPL--PNETWIFLSSKDGDLRDRKETDAIFDRVKPTHVIHLAAKVGGLFANMKQKVEFYRENTLINDNIMENCRIHNVTKLVSMLSTCIFPDKTTYPIDETMLHDGPPHPSNEGYAYAKRLIDTMNRAYAEEYGCNFTSIIPTNIYGPNDNFSIENGHVIPGLIHKCYKAKKDGTDFTIWGSGTPLRQFIYSGDLAELTVWVMRDYHSPDPITLSVDESAEVAIKDVAYAVAKAMKFEGKVVFDTSKADGQFKKTACNKKLRGLRPDYQFTSMEDGIQKSVDWFLENYETARK 324
[Close]
BLAST of NO12G01370 vs. NCBI_GenBank
Match: XP_009037431.1 (hypothetical protein AURANDRAFT_53743 [Aureococcus anophagefferens] >EGB08073.1 hypothetical protein AURANDRAFT_53743 [Aureococcus anophagefferens])

HSP 1 Score: 466.1 bits (1198), Expect = 9.000e-128
Identity = 217/321 (67.60%), Postives = 262/321 (81.62%), Query Frame = 0 
Query:    1 MSKNNKKVVLVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRDKAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEACKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQAGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEVSIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTTIEEGLAQTCAWFKENYATARK 322
            M+   K+V +VTGGTGL G  I+ +      + +  T++FLSSKDGDLRD+AQT AIFE+ +P  V+HLAA+VGGLF NM +KVEFYREN+L+NDNVME C+ +KVEKLVSCLSTC+FPDKT+YPIDESM+H+G PH+SNEGYAYAKRM++VM+RCY EEYGC FT++IPTNIYGPHDNF+V  GHV+PGLIHKCY A++ GT FT+WGSG PLRQFIYS DLA L VW MR Y SAD +ILSVGEEDEVSI  +A  +  AM+F+G+V+FDTDKADGQYKKTASN KL+ LRPDF+FT + EGL +   WF  NY T RK
Sbjct:    1 MAAMAKQVCMVTGGTGLYGSAIKTYVE-QTASEQGATWVFLSSKDGDLRDRAQTEAIFERVKPTHVVHLAAMVGGLFANMAKKVEFYRENMLMNDNVMECCRIYKVEKLVSCLSTCIFPDKTSYPIDESMVHDGAPHSSNEGYAYAKRMIEVMNRCYAEEYGCKFTAVIPTNIYGPHDNFSVNGGHVVPGLIHKCYVAKRDGTPFTVWGSGTPLRQFIYSVDLAALTVWVMRSYDSADSIILSVGEEDEVSIKDVALMIRDAMKFEGEVIFDTDKADGQYKKTASNDKLKGLRPDFKFTPMREGLQKAVDWFVANYDTCRK 320
[Close]
BLAST of NO12G01370 vs. NCBI_GenBank
Match: GAX19507.1 (GDP-L-fucose synthase [Fistulifera solaris])

HSP 1 Score: 461.5 bits (1186), Expect = 2.200e-126
Identity = 216/318 (67.92%), Postives = 255/318 (80.19%), Query Frame = 0 
Query:    4 NNKKVVLVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRDKAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEACKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQAGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEVSIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTTIEEGLAQTCAWFKENYATARK 322
            N K V++VTGG+GLVG GI+ F        E E ++FLSSKDGD+R +     IFEKY+P  VIHLAA VGGLF NM  KVEF+REN+LINDNVME C+ +KV+KLVS LSTC+FPDKTTYPIDE+M+H+GPPH SNEGYAYAKR++D M+R Y EEYGCNFTSIIPTNIYGPHDNF++Q GHVIPGLIHKCY A+Q  T FTIWGSG PLRQF+YS DLAEL VW +REYH   P+ LSV EEDEVSI  +A  VAKAM+F+G+++FDT KADGQ+KKTA N KLR   PD++FT+IEEG+ Q+  WF ENY  ARK
Sbjct:    6 NEKNVIMVTGGSGLVGMGIKTFIENGN-QVEGEEWVFLSSKDGDMRKRDDCEKIFEKYKPTHVIHLAAKVGGLFANMAAKVEFFRENILINDNVMECCRIYKVKKLVSFLSTCIFPDKTTYPIDETMLHDGPPHPSNEGYAYAKRLIDTMNRAYAEEYGCNFTSIIPTNIYGPHDNFSIQSGHVIPGLIHKCYLAKQDNTPFTIWGSGTPLRQFVYSIDLAELTVWVLREYHDPTPITLSVDEEDEVSIKDVALAVAKAMKFEGEIIFDTSKADGQFKKTAGNKKLRKYLPDYKFTSIEEGIQQSVDWFVENYEVARK 322
[Close]
BLAST of NO12G01370 vs. NCBI_GenBank
Match: GAX09622.1 (GDP-L-fucose synthase [Fistulifera solaris])

HSP 1 Score: 457.6 bits (1176), Expect = 3.200e-125
Identity = 215/318 (67.61%), Postives = 254/318 (79.87%), Query Frame = 0 
Query:    4 NNKKVVLVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRDKAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEACKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQAGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEVSIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTTIEEGLAQTCAWFKENYATARK 322
            N K V++VTGG+GLVG GI+ F        E E ++FLSSKDGD+R +     IFEKY+P  VIHLAA VGGLF NM  KVEF+REN+LINDNVME C+ + V+KLVS LSTC+FPDKTTYPIDE+M+H+GPPH SNEGYAYAKR++D M+R Y EEYGCNFTSIIPTNIYGPHDNF++Q GHVIPGLIHKCY A+Q  T FTIWGSG PLRQF+YS DLAEL VW +REYH   P+ LSV EEDEVSI  +A  VAKAM+F+G++VFDT KADGQ+KKTA N KLR   PD++FT+IEEG+ ++  WF ENY  ARK
Sbjct:    6 NEKNVIMVTGGSGLVGMGIKTFIENGN-QVEGEEWVFLSSKDGDMRKRDDCEKIFEKYKPTHVIHLAAKVGGLFANMAAKVEFFRENILINDNVMECCRIYNVKKLVSFLSTCIFPDKTTYPIDETMLHDGPPHPSNEGYAYAKRLIDTMNRAYAEEYGCNFTSIIPTNIYGPHDNFSIQSGHVIPGLIHKCYLAKQDQTPFTIWGSGTPLRQFVYSIDLAELTVWVLREYHDPTPITLSVDEEDEVSIKDVALAVAKAMKFEGEIVFDTSKADGQFKKTAGNKKLRKYLPDYKFTSIEEGIQKSVDWFVENYEVARK 322
[Close]
BLAST of NO12G01370 vs. NCBI_GenBank
Match: CAB61336.1 (GDP-4-keto-6-deoxy-D-mannose epimerase-reductase, partial [Laminaria digitata])

HSP 1 Score: 454.9 bits (1169), Expect = 2.100e-124
Identity = 205/306 (66.99%), Postives = 247/306 (80.72%), Query Frame = 0 
Query:   16 GLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRDKAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEACKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQAGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEVSIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTTIEEGLAQTCAWFKENYATARK 322
            GLVG GI++F S+D  A E E YIFLSSKDGDLR   +T AIFEKY+P  VIHLAA VGGLF N+K KVEF+REN+LINDNVME C+ +KVEKLVSCLSTC+FPDKTTYPIDE+M+HNGPPH SNEGYAYAKRM+DV++RCYK+EYGCNFTS+IPTNIYG  DNF++ +GHV+PGLIHKCY A+QAG D  +WG+G PLRQFIY+ DL  L++W MR YH  DP+ILSVG     SI   A+ +A +M+F+G VVFDTDK DGQ+KKTA    L+   PDF+FT +++GL + C WF EN+ TARK
Sbjct:    1 GLVGSGIKEFVSSDAEAKEKEEYIFLSSKDGDLRSMDETKAIFEKYKPTHVIHLAARVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMIWAMRHYHEVDPIILSVGRRTRSSIAERAKMIASSMDFEGNVVFDTDKPDGQFKKTACQHLLKKKNPDFKFTPMKDGLKEACEWFCENFETARK 306
[Close]
BLAST of NO12G01370 vs. NCBI_GenBank
Match: OEU10199.1 (putative GDP-fucose synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 450.3 bits (1157), Expect = 5.100e-123
Identity = 213/316 (67.41%), Postives = 255/316 (80.70%), Query Frame = 0 
Query:    8 VVLVTGGTGLVGKGIEDF-TSTDPIAT-ETETYIFLSSKDGDLRDKAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEACKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQAGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEVSIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTTIEEGLAQTCAWFKENYATARK 322
            VV+VTGG+GLVG+ I+++ T  D   T   ET+IFLSSKDGDLRD+  T A+FEK++P  VIHLAA VGGLF NM EKVEFYREN+L+NDN+ME  + +KV+KLV  LSTC+FPDKTTYPIDE+MIHNGPPH SNEGYAYAKRM+D M+R Y EEY CNFTSIIPTNIYG  DNF+++ GHVIPGLIHKCY A+Q GT F IWGSG PLRQF+YSRDLAEL VW  REY+ ADP+ILSV E+DEV+I  +A  VAKA  F+GK+ FDT K+DGQYKKTA N KLR  RPD++FT++ +G+ ++  WF  NY T RK
Sbjct:   13 VVMVTGGSGLVGQAIKEYVTENDNENTLSGETWIFLSSKDGDLRDRKATEAVFEKFKPTHVIHLAAKVGGLFANMAEKVEFYRENILMNDNIMECSRIYKVQKLVGMLSTCIFPDKTTYPIDETMIHNGPPHHSNEGYAYAKRMIDTMNRAYNEEYNCNFTSIIPTNIYGKSDNFSIETGHVIPGLIHKCYKAKQDGTPFCIWGSGTPLRQFVYSRDLAELTVWVTREYNEADPIILSVDEDDEVTIKDVALAVAKAHNFEGKIEFDTSKSDGQYKKTACNMKLRKYRPDYKFTSMPDGIQKSVDWFVANYETCRK 328
[Close]
BLAST of NO12G01370 vs. NCBI_GenBank
Match: XP_002183034.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45252.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 446.8 bits (1148), Expect = 5.600e-122
Identity = 208/312 (66.67%), Postives = 254/312 (81.41%), Query Frame = 0 
Query:   10 LVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRDKAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEACKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQAGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEVSIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTTIEEGLAQTCAWFKENYATARK 322
            +VTGG+GLVG  I ++      A E E++I+L+SK+GDLR++A T  IF KY+P  VIHLAA VGGLF NM +KVEF+REN+LINDN+ME  + +KVEKLVS LSTC+FPDKTTYPIDE+M+H+GPPH SNEGYAYAKR++D M+R Y EEYGCNFTSIIPTNIYGPHDNF++Q+GHVIPGLIHKCY A++  T FTIWGSG PLRQF+YSRDLAEL VW MREYH   P+ LSV EE+EVSI  +A  VAKAM+F G++VFDT KADGQ+KKTA N KLRSL+ D+ FT++ +G+ Q+  WF  NY + RK
Sbjct:    1 MVTGGSGLVGAAIREYVEGTG-ALENESWIYLNSKEGDLRNRADTEKIFAKYQPTHVIHLAAKVGGLFANMAQKVEFFRENILINDNIMECSRIYKVEKLVSFLSTCIFPDKTTYPIDETMLHDGPPHPSNEGYAYAKRLIDTMNRAYAEEYGCNFTSIIPTNIYGPHDNFSIQNGHVIPGLIHKCYLAKKDNTPFTIWGSGTPLRQFVYSRDLAELTVWVMREYHDPTPITLSVDEEEEVSIKDVALAVAKAMQFDGQIVFDTSKADGQFKKTACNKKLRSLKADYEFTSMPDGIQQSVDWFVANYDSCRK 311
The following BLAST results are available for this feature:
BLAST of NO12G01370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25919.17.500e-17591.59GDP-L-fucose synthetase [Nannochloropsis gaditana][more]
AUN86413.17.600e-13570.57GDP-fucose pyrophosphorylase [Saccharina japonica][more]
CBJ25547.14.100e-13370.51GDP-4-keto-6-deoxy-D-mannose epimerase-reductase [... [more]
XP_002295077.13.300e-13068.22gdp-fucose synthetase [Thalassiosira pseudonana CC... [more]
XP_009037431.19.000e-12867.60hypothetical protein AURANDRAFT_53743 [Aureococcus... [more]
GAX19507.12.200e-12667.92GDP-L-fucose synthase [Fistulifera solaris][more]
GAX09622.13.200e-12567.61GDP-L-fucose synthase [Fistulifera solaris][more]
CAB61336.12.100e-12466.99GDP-4-keto-6-deoxy-D-mannose epimerase-reductase, ... [more]
OEU10199.15.100e-12367.41putative GDP-fucose synthetase [Fragilariopsis cyl... [more]
XP_002183034.15.600e-12266.67predicted protein [Phaeodactylum tricornutum CCAP ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01370.1NO12G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592043gene_5295Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01370.1NO12G01370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01370 ID=NO12G01370|Name=NO12G01370|organism=Nannochloropsis oceanica|type=gene|length=1984bp
ATGTCCAAGAACAACAAAAAGGTGGTACTGGTCACGGGAGGGACGGGCCT
GGTAGGCAAGGGAATCGAAGATTTCACCTCGACTGgtaagttggggacgg
agtatataaagggcgtcgagaaagcgttgacgtgaatctggaggagtggt
ggcgtcaccccaagccttaaaaagcgcatgcaaatgaatctagcggtacc
acctgaatcaagtgatggtttttgactcccttcgcctgtggcctatgtct
cctgcttttccacacgatgcttaacacgatttcctccttgccttcctccc
tccctccctttcctcttttcattcctcattcgtagACCCCATCGCCACCG
AGACGGAGACATATATCTTCCTCAGCTCCAAGGATGGAGATTTGCGCGAT
AAGGCGCAGACGTATGCCATTTTTGAGAAGTACCGCCCGGCGATGGTCAT
TCACTTGGCGGCGTTGGTCGGGGGATTGTTTCGTAACATGAAGGAGAAGG
TGGAGTTTTACCGCGAGAATGTGTTGATCAACGATAACGTGATGGAGGCC
TGCAAGGATCATAAGGTGGAGAAACTGGTTTCGTGCTTGTCGACGTGTGT
GTTCCCCGATAAGACGACGTACCCGATCGATGAGAGCATGATTCATAATG
GGCCGCCCCATGCCTCTAATGAGGgtaagcgaaggagggaaggagcgaag
gaggaaggagggaaggagtgcagggagaactgattcgaggcggcaacatt
ctgtaagcgtggcaaccgtcctgacatttgatttatcctccctccctccc
tccctctctccctccttatcagGGTACGCGTATGCCAAACGCATGCTCGA
CGTCATGTCTCGCTGCTACAAGGAAGAATACGGCTGCAACTTCACCTCCA
TCATTCCTACAAACATCTATGGTCCCCATGATAACTTCAATGTCCAAgta
cgaaattgtcgtcccgtcctctttttccttctctccatgccgtcctgcag
attttatcaaaatactcgcttgatggaagcgactcaccctcttcttccct
ccgtccctccctccctccctccgtccctccttccctccccccctcccatt
agGACGGACACGTCATCCCCGGTCTTATTCACAAGTGCTACAACGCCGAG
CAGGCGGGCACAGATTTCACCATTTGGGGATCTGGCAAACCTCTGCGTCA
GTTCATTTACTCCCGGGATTTGGCAGAGTTGATCGTGTGGACCATGCGCG
AGTATCACgtgagtgggcgagggagggagggaggggggagggaggaaggg
gggggggggggggcgaggtttgagaagcggccgtgtcagtcgatgcatgc
attgtctcgtggaggttggccgagttgatgaaatgtgaaccatgcacgag
tgtgtgggtgacaaaaattagagtaccgtcttgagaaaggagctctctgg
aaaagaaggatgaataaaggaaaggaaggatagtagaatacactataccg
cacactcacatagatgatttcttacatcaactcgcctcctccctccttcc
tcctttccctccttcctcctttccctccttcctccttcccctccttccct
tcctagTCCGCGGATCCCCTCATTCTCTCGGTCGGCGAGGAGGATGAGGT
GTCCATCGGGACCCTGGCTCAGACCGTGGCCAAGGCCATGGAGTTCAAGG
GCAAGGTGGTGgtaagtcttgagaaaaggattgaagggaaagggagagta
atggtatcgcgtcgctctatcaaaagctatgacaacttactcacttcgct
ctctcccttcttctctccgtatgtctagTTCGACACCGACAAGGCCGATG
GCCAGTACAAGAAGACTGCCAGCAACGCCAAGCTCCGTTCCCTCCGTCCA
GACTTCCGCTTCACGACCATAGAGGAGGGACTTGCCCAGACCTGTGCTTG
GTTCAAGGAGAATTACGCGACTGCCCGAAAGTAA
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protein sequence of NO12G01370.1

>NO12G01370.1-protein ID=NO12G01370.1-protein|Name=NO12G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MSKNNKKVVLVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRD
KAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEA
CKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRML
DVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQ
AGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEV
SIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTT
IEEGLAQTCAWFKENYATARK*
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Synonyms
Publications