NO12G01260, NO12G01260 (gene) Nannochloropsis oceanica

Overview
NameNO12G01260
Unique NameNO12G01260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2023
Alignment locationchr12:396858..398880 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:396858..398880 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G01260 vs. NCBI_GenBank
Match: EWM25909.1 (hypothetical protein Naga_100048g24 [Nannochloropsis gaditana])

HSP 1 Score: 145.2 bits (365), Expect = 6.200e-31
Identity = 86/212 (40.57%), Postives = 114/212 (53.77%), Query Frame = 0 
Query:  283 DIRDMTSKERLAIVTHIIKRIESXXXXXXXXXXXXXXXXXXXXXXXISPSQPRLGYPRKWDGRIPRAVLELEGALYQYLKIGQALHPSLPLXXXXXXXXXXXXXXXXXXXXXXXXXXLHTLHFSARELLPLDLLNGEVSEAKVAKYHRRIRRAAGMWVAFRRHLRFLQCQNVLTSVEMRSVFGDALLGDMSKRERGEILRLRGKVDLLLESM 495
            DIR+MT++ER  +  ++I+ IE+                          + PR GYP  WDGRIP  VL+ E  +YQ LK        L                            LH L FS+RELLPL LL   V EAK++K+HR +R AAG+W+AF+ HLRFL  Q  +T  E+R +F +ALLGDMSKR +GE+LR+R K+ LLLES+
Sbjct:  240 DIRNMTAEERFTVAVNLIRLIEN---------------LSYAVASSTRAALPRSGYPAVWDGRIPSRVLKFEQRMYQDLKSN-----VLQENCSSILQSRSPGGASESFVTTCCLAFLHLLRFSSRELLPLHLLEEAVEEAKLSKHHRHVRHAAGLWMAFQDHLRFLLYQESMTPEEIRDIFAEALLGDMSKRGKGEVLRIRRKIMLLLESI 431
The following BLAST results are available for this feature:
BLAST of NO12G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25909.16.200e-3140.57hypothetical protein Naga_100048g24 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010046NSK010046Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01260.1NO12G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630937gene_5283Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100048g24gene4623Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01260.1NO12G01260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01260 ID=NO12G01260|Name=NO12G01260|organism=Nannochloropsis oceanica|type=gene|length=2023bp
ATGCTCGACGACAGCATCACCACTGGCCCATCCCACCGGCACGACCATCA
GCACTTTCATGGCGTCGTCGCAAGGTGGGAGAAGCTGGAAAGACGCCGAC
AAGAAATgtgagtgtgattctagccgagttcttggaggttccttgatttt
ggtttcccttcttggtcgtcatttattcgtcatccctccctcagcaggct
ctccaacacttggaggctccacggcactcaatgtatcccgtgcacacgaa
gataataaggctgattacaccacatttatttctcctctttattcattacc
tttcctcccccctgaccgaagTGCCGATCAGCGCCAAGCTCTTGAGGCCG
TCATGCATAAGCAGCACAGACACCAGCATCAAAGCCAGGACAATGgtgag
gaaagatcgcactcttacctacaaaagctcgagatcatgcgccatcgact
tcaaaaaatacaaactcgcaatcacaccattctccgcgaagTGGACGAGG
CCAAGGCTCTTGTCCAAGAGTATCGGGAGCAACAACATAACAACGCCCAT
AACAATAACGACGAGGACGACGACAATACGGACAGCAGCAACTGCCGCCA
GCGTCTGGTCGCGGCTAAGAAGTCTTTCATAAGGGTTGTGAAAGAAGACA
TGGGTATGTTGCCAGCGTTGTGCCCGGAGAAGATGCTGATGTGGTCAGTG
ACGGGTGCTGGCGTGGAGGAGAGGCAGCAGCAGCAGCAGCAGCAAGGAAG
ACGACAGTCACTCAATGAGAACGGGCTGTCACCGAACCAGGGTAATGAAA
CGGAAGAGCGGCCAGTAGCACATAGAAGTCCCCACGTTATGAGCAGCAAT
ATTCTTTGGAGCGAGGGAGGTGAAGAGGAGGAGGAGGAGGAGGAGGAGGA
TGAGGAGAAGGAGGAGAAGGAGGAGGTGCGATGGGATGATACCTCGTCAG
CCACGGCACCCTCTCCCCCGACATCTTGCCATGTACAGGGGTGTCAACAA
TTTCTTACCCCGGCTTCTGACTTCTACATCGCTAAAAAAGCTGCTACTAG
GCTGCAGCATGCACCGCAACAGCAGCGCAAGAGCTTGCTACTGCCGGAGT
GGGGGACACAACAGATTGCGAAGGAGAATGAGGGCGGCTTTATCACAATC
AGATACGATATTCGAGACATGACATCAAAGGAGCGCTTAGCAATAGTAAC
GCACATAATCAAGCGCATTGAGAGTCTCGCTGGTGGTGGTGGTAGTGGTG
GTAGTGGTGGTAGTGGTGTTGTCTTCTCCACCTCTACCTCCTCCATTTCT
CCCTCCCAACCTCGTCTAGGTTATCCCAGAAAATGGGATGGACGCATTCC
TCGAGCAGTTCTCGAGCTAGAAGGAGCCTTATACCAATACCTCAAAATAG
GCCAAGCCCTTCATCCCTCCTTACCATTACCAACACCACCACAGCAACAC
CAGCAGCCACAGCTGCAGCAAAAACAGCAGCAGCAACAATTACATTGCCT
CGCTCTTCTTCACACCCTCCATTTTTCTGCCCGGGAGCTCCTACCCCTCG
ATCTTTTGAACGGCGAAGTGAGCGAGGCTAAAGTTGCCAAATATCATCGA
AGAATTAGACGGGCTGCTGGCATGTGGGTCGCCTTCCGCCGGCACCTTCG
TTTCTTGCAGTGCCAGAACGTACTGACCTCTGTGGAGATGAGGTCAGTCT
TTGGAGATGCCTTGCTGGGGGATATGAGCAAAAGGGAACGGGGGGAGATT
TTGAGATTGCGTGGAAAGGTAGACTTGTTGCTGGAGAGTATGATGAAAGC
ATTTTCGGAAGAGTTGCAGGAGGAGCAGAGGGAGAGGGAGAAGGAGAAAA
ATAAGGAGAAGAGTATTGGTGCTGTGGATCAACATCTTGACGAGCAAGGG
ACAACGACAACAAGAAAGGGCATCAGCAGCACTAGCAGCAGCAGCAGCAG
CAGATCCAGTACGCTTGCTGCGGCCACCTGTCCGGGCAAGAAGAGCTTCT
TGAGTCGTGTCCTACGGTGGTAG
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protein sequence of NO12G01260.1

>NO12G01260.1-protein ID=NO12G01260.1-protein|Name=NO12G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=571bp
MLDDSITTGPSHRHDHQHFHGVVARWEKLERRRQEIADQRQALEAVMHKQ
HRHQHQSQDNVDEAKALVQEYREQQHNNAHNNNDEDDDNTDSSNCRQRLV
AAKKSFIRVVKEDMGMLPALCPEKMLMWSVTGAGVEERQQQQQQQGRRQS
LNENGLSPNQGNETEERPVAHRSPHVMSSNILWSEGGEEEEEEEEEDEEK
EEKEEVRWDDTSSATAPSPPTSCHVQGCQQFLTPASDFYIAKKAATRLQH
APQQQRKSLLLPEWGTQQIAKENEGGFITIRYDIRDMTSKERLAIVTHII
KRIESLAGGGGSGGSGGSGVVFSTSTSSISPSQPRLGYPRKWDGRIPRAV
LELEGALYQYLKIGQALHPSLPLPTPPQQHQQPQLQQKQQQQQLHCLALL
HTLHFSARELLPLDLLNGEVSEAKVAKYHRRIRRAAGMWVAFRRHLRFLQ
CQNVLTSVEMRSVFGDALLGDMSKRERGEILRLRGKVDLLLESMMKAFSE
ELQEEQREREKEKNKEKSIGAVDQHLDEQGTTTTRKGISSTSSSSSSRSS
TLAAATCPGKKSFLSRVLRW*
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Synonyms
Publications