NO12G01200, NO12G01200 (gene) Nannochloropsis oceanica

Overview
NameNO12G01200
Unique NameNO12G01200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length489
Alignment locationchr12:375700..376188 -

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Properties
Property NameValue
DescriptionUbiquitin-conjugating enzyme
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:375700..376188 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
[Close]
BLAST of NO12G01200 vs. NCBI_GenBank
Match: EWM25895.1 (ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 279.6 bits (714), Expect = 6.000e-72
Identity = 132/162 (81.48%), Postives = 142/162 (87.65%), Query Frame = 0 
Query:    1 MWPGRGSNSASRTVAAAPSGGAAQEVIIVPRNFKLLEELDHAEKGHDPTISLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVRFVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQANRRLPQPPEGSRF 163
            MWPGR  +S +RT AA P+ G+ Q+ IIVPRNFKLLEELD AEKG DPTISLGLQNQ+DIFLVAWNGSIFGPPGTTFEGRLFELK+ECGDRYP  PP VRFVSRVNLPCVD +TGVV P KL ILS+WDR FTMERVLNELRREMM Q +RRLPQPPEGSRF
Sbjct:    1 MWPGRAMSSPNRTAAAPPASGSQQDEIIVPRNFKLLEELDQAEKGQDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
[Close]
BLAST of NO12G01200 vs. NCBI_GenBank
Match: XP_008868550.1 (hypothetical protein H310_05583 [Aphanomyces invadans] >ETW03166.1 hypothetical protein H310_05583 [Aphanomyces invadans])

HSP 1 Score: 177.6 bits (449), Expect = 3.200e-41
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 0 
Query:   22 AAQEVIIVPRNFKLLEELDHAEKGH-DPTISLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVRFVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQANRRLPQPPEGSRF 163
            A  EV+IVPRNFKLLEEL+ AEKGH D +IS GL+  DDIFL +W G+I GP GTT +GR++ LK+ CG+ YP  PP V F SR+N+ CVD T G V P  L +L++W R + +E+VL  LR EM +  N+RLPQ PEGS F
Sbjct:    4 AGAEVVIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTTHDGRIYSLKIHCGENYPNAPPEVLFTSRINMSCVDQTNGRVNPRGLGVLASWQRTYGIEQVLVALRNEMASATNKRLPQHPEGSSF 145
[Close]
BLAST of NO12G01200 vs. NCBI_GenBank
Match: XP_009835736.1 (hypothetical protein H257_10779 [Aphanomyces astaci] >ETV74649.1 hypothetical protein H257_10779 [Aphanomyces astaci])

HSP 1 Score: 176.0 bits (445), Expect = 9.400e-41
Identity = 79/142 (55.63%), Postives = 104/142 (73.24%), Query Frame = 0 
Query:   22 AAQEVIIVPRNFKLLEELDHAEKGH-DPTISLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVRFVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQANRRLPQPPEGSRF 163
            A  EV+IVPRNFKLLEEL+ AEKGH D +IS GL+  DDIFL +W G+I GP GT+ +GR++ LK+ CG+ YP  PP V F SR+N+ CVD + G V P  L +L++W R++ +E+VL  LR EM + AN+RLPQ PEG+ F
Sbjct:    4 AGAEVVIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTSHDGRIYSLKIHCGENYPNAPPEVLFTSRINMSCVDQSNGRVNPRSLGVLASWQRSYGIEQVLVALRNEMASTANKRLPQHPEGASF 145
[Close]
BLAST of NO12G01200 vs. NCBI_GenBank
Match: OWZ23796.1 (DNA topoisomerase [Phytophthora megakarya])

HSP 1 Score: 176.0 bits (445), Expect = 9.400e-41
Identity = 79/139 (56.83%), Postives = 101/139 (72.66%), Query Frame = 0 
Query:   25 EVIIVPRNFKLLEELDHAEKGH-DPTISLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVRFVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQANRRLPQPPEGSRF 163
            EV+IVPRNFKLLEEL+++EKGH D +IS GL+  DDIFL  W G+I GP GT  +GR++ L++ C D+YP +PP V F SR+N+ CVDP +G V P +LS L NW R   +E VL  +R EM +  NRRLPQPPEG+ F
Sbjct: 1148 EVVIVPRNFKLLEELENSEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLRIHCSDQYPHVPPEVHFTSRINMSCVDPQSGRVDPRRLSALGNWHRNNGIENVLVAIRAEMASPTNRRLPQPPEGTNF 1286
[Close]
BLAST of NO12G01200 vs. NCBI_GenBank
Match: XP_024573861.1 (dna topoisomerase ii [Plasmopara halstedii] >CEG37492.1 dna topoisomerase ii [Plasmopara halstedii])

HSP 1 Score: 173.3 bits (438), Expect = 6.100e-40
Identity = 83/159 (52.20%), Postives = 109/159 (68.55%), Query Frame = 0 
Query:    5 RGSNSASRTVAAAPSGGAAQEVIIVPRNFKLLEELDHAEKGH-DPTISLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVRFVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQANRRLPQPPEGSRF 163
            R   +AS   AA    GA  EV+I+PRNFKLLEEL+++EKGH D +IS GL+  DDIFL  W G+I GP GT  +GR++ L++ C D+YP +PP V F SR+N+ CVDP +G V P +L+ L +W R   +E VL  +R EM +  NRRLPQPPEG+ F
Sbjct: 1170 RSWKAASDAFAAMAKHGA--EVVIMPRNFKLLEELENSEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLRIHCSDQYPHVPPEVHFTSRINMSCVDPQSGRVDPRRLAALGSWHRNNGIEHVLVAIRAEMASATNRRLPQPPEGTNF 1326
[Close]
BLAST of NO12G01200 vs. NCBI_GenBank
Match: GAX92177.1 (DNA topoisomerase 2 DNA gyrase B [Pythium insidiosum])

HSP 1 Score: 173.3 bits (438), Expect = 6.100e-40
Identity = 80/145 (55.17%), Postives = 101/145 (69.66%), Query Frame = 0 
Query:   19 SGGAAQEVIIVPRNFKLLEELDHAEKGH-DPTISLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVRFVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQANRRLPQPPEGSRF 163
            +G    EV+IVPRNFKLLEEL+ AEKGH D +IS GL+  DDIFL  W G+I GP GT  +GR++ L++ C D+YP +PP   F SR+N+ CVDP  G V   +L +L+NW+R   +E VL  LR EM +  NRRLPQPPEGS F
Sbjct:    3 AGRPGAEVVIVPRNFKLLEELESAEKGHGDMSISFGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLRIHCSDQYPTMPPEFYFTSRINMSCVDPQNGRVDARRLPVLANWNRNSGIETVLIALRAEMASPTNRRLPQPPEGSTF 147
[Close]
BLAST of NO12G01200 vs. NCBI_GenBank
Match: XP_009526201.1 (hypothetical protein PHYSODRAFT_559851 [Phytophthora sojae] >EGZ17143.1 hypothetical protein PHYSODRAFT_559851 [Phytophthora sojae])

HSP 1 Score: 172.9 bits (437), Expect = 7.900e-40
Identity = 82/155 (52.90%), Postives = 106/155 (68.39%), Query Frame = 0 
Query:    9 SASRTVAAAPSGGAAQEVIIVPRNFKLLEELDHAEKGH-DPTISLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVRFVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQANRRLPQPPEGSRF 163
            S S    A    GA  EV+IVPRNFKLLEEL+++EKGH D +IS GL+  DDIFL  W G+I GP GT  +GR++ L++ C D+YP +PP V F SR+N+ CVDP +G V P +L+ L +W R   +E VL  +R EM +  NRRLPQPPEG+ F
Sbjct: 1188 SPSHAFGAMAKHGA--EVVIVPRNFKLLEELENSEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLRIHCSDQYPHMPPEVHFTSRINMSCVDPQSGRVDPRRLAALGSWHRNNGIENVLVAIRAEMASPTNRRLPQPPEGTNF 1340
[Close]
BLAST of NO12G01200 vs. NCBI_GenBank
Match: XP_008893243.1 (hypothetical protein PPTG_01622 [Phytophthora parasitica INRA-310] >ETI45173.1 hypothetical protein F443_10154 [Phytophthora parasitica P1569] >ETK85142.1 hypothetical protein L915_09935 [Phytophthora parasitica] >ETL38561.1 hypothetical protein L916_09848 [Phytophthora parasitica] >ETL91687.1 hypothetical protein L917_09765 [Phytophthora parasitica] >ETM44993.1 hypothetical protein L914_09820 [Phytophthora parasitica] >ETN21449.1 hypothetical protein PPTG_01622 [Phytophthora parasitica INRA-310] >ETO73829.1 hypothetical protein F444_10251 [Phytophthora parasitica P1976] >ETP14982.1 hypothetical protein F441_10095 [Phytophthora parasitica CJ01A1] >ETP43067.1 hypothetical protein F442_10059 [Phytophthora parasitica P10297] >KUF83254.1 DNA topoisomerase 2 [Phytophthora nicotianae] >KUF97704.1 Adhesin protein [Phytophthora nicotianae])

HSP 1 Score: 172.9 bits (437), Expect = 7.900e-40
Identity = 77/139 (55.40%), Postives = 101/139 (72.66%), Query Frame = 0 
Query:   25 EVIIVPRNFKLLEELDHAEKGH-DPTISLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVRFVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQANRRLPQPPEGSRF 163
            EV+IVPRNFKLLEEL+++EKGH D +IS GL+  DDIFL  W G+I GP GT  +GR++ L++ C D+YP +PP V F SR+N+ CVDP +G V P +L+ L +W R   +E VL  +R EM +  NRRLPQPPEG+ F
Sbjct:    7 EVVIVPRNFKLLEELENSEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLRIHCSDQYPHVPPEVHFTSRINMSCVDPQSGRVDPRRLAALGSWHRNNGIENVLVAIRAEMASPTNRRLPQPPEGTNF 145
[Close]
BLAST of NO12G01200 vs. NCBI_GenBank
Match: XP_002907974.1 (DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4] >EEY61057.1 DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4])

HSP 1 Score: 172.9 bits (437), Expect = 7.900e-40
Identity = 83/160 (51.88%), Postives = 110/160 (68.75%), Query Frame = 0 
Query:    8 NSASRTVAAAPSGGA----AQEVIIVPRNFKLLEELDHAEKGH-DPTISLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVRFVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQANRRLPQPPEGSRF 163
            NSA+    A+ + GA      EV+IVPRNFKLLEEL+++EKGH D +IS GL+  DDIFL  W G+I GP GT  +GR++ L++ C D+YP +PP V F SR+N+ CVDP +G V P +L+ L +W R   +E VL  +R EM +  NRRLPQPPEG+ F
Sbjct: 1170 NSATLKRPASDAFGAMAKHGAEVVIVPRNFKLLEELENSEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLRIHCSDQYPHVPPEVHFTSRINMSCVDPQSGRVDPRRLAALGSWHRNNGIEHVLVAIRAEMASPTNRRLPQPPEGANF 1329
[Close]
BLAST of NO12G01200 vs. NCBI_GenBank
Match: XP_009391840.1 (PREDICTED: ubiquitin-conjugating enzyme E2 variant 1C-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 172.9 bits (437), Expect = 7.900e-40
Identity = 77/146 (52.74%), Postives = 105/146 (71.92%), Query Frame = 0 
Query:   18 PSGGAAQEVIIVPRNFKLLEELDHAEKG-HDPTISLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVRFVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQANRRLPQPPEGSRF 163
            P GG+    I+VPRNF+LLEEL+  EKG  D T+S G+ + DDI++ +W G+I GP  T  EGR+++LK+ C   YP+ PP+VRF SRVN+ CV+P TGVV P K S+L NW+R +TME +L +L++EM    NR+L QPPEG+ F
Sbjct:    2 PLGGSGGSGIVVPRNFRLLEELERGEKGVGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCNKDYPDKPPSVRFHSRVNMTCVNPDTGVVDPRKFSVLGNWERDYTMEYILTQLKKEMAAPHNRKLVQPPEGTHF 147
The following BLAST results are available for this feature:
BLAST of NO12G01200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25895.16.000e-7281.48ubiquitin-conjugating enzyme [Nannochloropsis gadi... [more]
XP_008868550.13.200e-4157.04hypothetical protein H310_05583 [Aphanomyces invad... [more]
XP_009835736.19.400e-4155.63hypothetical protein H257_10779 [Aphanomyces astac... [more]
OWZ23796.19.400e-4156.83DNA topoisomerase [Phytophthora megakarya][more]
XP_024573861.16.100e-4052.20dna topoisomerase ii [Plasmopara halstedii] >CEG37... [more]
GAX92177.16.100e-4055.17DNA topoisomerase 2 DNA gyrase B [Pythium insidios... [more]
XP_009526201.17.900e-4052.90hypothetical protein PHYSODRAFT_559851 [Phytophtho... [more]
XP_008893243.17.900e-4055.40hypothetical protein PPTG_01622 [Phytophthora para... [more]
XP_002907974.17.900e-4051.88DNA topoisomerase 2 DNA gyrase B [Phytophthora inf... [more]
XP_009391840.17.900e-4052.74PREDICTED: ubiquitin-conjugating enzyme E2 variant... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010037NSK010037Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01200.1NO12G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591983gene_5276Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100048g18gene4617Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01200.1NO12G01200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01200 ID=NO12G01200|Name=NO12G01200|organism=Nannochloropsis oceanica|type=gene|length=489bp
ATGTGGCCTGGTCGCGGGAGCAACAGCGCAAGCCGCACGGTCGCAGCTGC
TCCGTCAGGGGGGGCGGCGCAGGAGGTGATCATTGTACCCCGCAATTTCA
AGCTGCTCGAGGAGCTCGACCACGCCGAGAAAGGGCACGACCCAACCATT
TCCCTAGGACTGCAGAATCAGGATGACATTTTTTTGGTGGCTTGGAATGG
CTCCATCTTCGGCCCGCCAGGCACGACGTTCGAGGGCCGGTTGTTTGAAC
TCAAGGTGGAATGCGGCGACCGCTACCCAGAATTGCCCCCAGCCGTCCGC
TTTGTCAGCCGCGTGAATTTGCCGTGCGTTGACCCGACTACCGGGGTAGT
GCAGCCGCACAAATTGTCGATCTTGAGTAATTGGGACAGGGCATTTACGA
TGGAAAGGGTGTTGAACGAGCTTAGAAGAGAGATGATGAACCAAGCCAAT
CGACGGCTGCCCCAGCCGCCTGAGGGGAGTCGATTTTGA
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protein sequence of NO12G01200.1

>NO12G01200.1-protein ID=NO12G01200.1-protein|Name=NO12G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MWPGRGSNSASRTVAAAPSGGAAQEVIIVPRNFKLLEELDHAEKGHDPTI
SLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVR
FVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQAN
RRLPQPPEGSRF*
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Synonyms
Publications