NO12G01120, NO12G01120 (gene) Nannochloropsis oceanica

Overview
NameNO12G01120
Unique NameNO12G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1557
Alignment locationchr12:353956..355512 +

Link to JBrowse

Properties
Property NameValue
Descriptionisopropyl malate isomerase large subunit 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:353956..355512 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR036008Aconitase_4Fe-4S_dom
IPR001030Acoase/IPM_deHydtase_lsu_aba
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
Homology
BLAST of NO12G01120 vs. NCBI_GenBank
Match: EWM25901.1 (homoaconitate hydratase family protein [Nannochloropsis gaditana])

HSP 1 Score: 929.1 bits (2400), Expect = 6.000e-267
Identity = 465/523 (88.91%), Postives = 488/523 (93.31%), Query Frame = 0
Query:    1 MAPATPAVALLGATLAFANAFVPPTPTVTSSSRFGSI----RMMAGSVDGAAASKAPPMTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSNTRHPAETLAS-APAKNSVFAKK 519
            MAPA   V +LGATLA  NAFVPP P  ++S RF  +    R+ A   DG A++KAPPMTLTEKILARAAGKESVAPNDNVWV+ADNL+THDVCGPGTFGLFKKEFG  AKVWD+ERV+IIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVA+AQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKF+LNGEIPDYLLAKD+ILQ+IGDIGVAGATYRAMEFGG+AI QLSMEERQTLCNMAIEAGGKNGIIPAD VT  YVDARNAG+RPYTIF+ADPDA Y +KYAYDLSSLEPVVAKPHSPDNRALA++CRDIKIDRVYIGSCTGGKTEDFVAAARILQ NKVSVPTFLVPATRRVYDDLYSLT+GGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFS TR PAETLA+ APA  SVFAKK
Sbjct:    1 MAPAAQIVTMLGATLALCNAFVPPVP--STSPRFSKLAAPRRLAAAGADG-ASTKAPPMTLTEKILARAAGKESVAPNDNVWVRADNLMTHDVCGPGTFGLFKKEFGANAKVWDRERVLIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFELNGEIPDYLLAKDMILQIIGDIGVAGATYRAMEFGGNAIRQLSMEERQTLCNMAIEAGGKNGIIPADEVTTAYVDARNAGSRPYTIFEADPDASYFAKYAYDLSSLEPVVAKPHSPDNRALARECRDIKIDRVYIGSCTGGKTEDFVAAARILQQNKVSVPTFLVPATRRVYDDLYSLTLGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSQTRQPAETLATKAPA--SVFAKK 518          
BLAST of NO12G01120 vs. NCBI_GenBank
Match: AHN91991.1 (homoaconitate hydratase [Scytosiphon lomentaria])

HSP 1 Score: 775.8 bits (2002), Expect = 8.500e-221
Identity = 367/456 (80.48%), Postives = 409/456 (89.69%), Query Frame = 0
Query:   54 PMTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEF-SNTRHPAETLASA 509
            PMT+TEKI+A+A G+ SVAPNDNVWV+ D L+THDVCGPGT G F KEFGP+AKVWD E V+IIPD YIFT+DPRANRNVDILRDFV +Q+IKYFYDITDRG FK NPDYKGVCHVA+AQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDA+FV+GTGKLL+K PASM+F L GE+PD+LLAKDIILQ+IGDIGVAGATYR+MEF G A+GQLSMEERQTLCNMAIEAGGKNG+IPAD VT  YVDARNAGN+PY IF AD +AKY SK  YD+ +LEPVVAKPHSPDN+ALA+DCRD KIDRVYIGSCTGGKTEDF AAARILQ  KV VPTFLVPAT++VY+D+ ++TIGGRTLA IFR+AGC++PASPSCAACLGGPADT+ARMNEP  CVSTTNRNFPGRMGHK AGI+LASPYTAAASA+TG+VTDPREVFEF    R   E + SA
Sbjct:   92 PMTVTEKIIAKACGRSSVAPNDNVWVRTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDPEGVVIIPDQYIFTADPRANRNVDILRDFVNQQDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKSPASMQFALEGEMPDHLLAKDIILQIIGDIGVAGATYRSMEFAGSALGQLSMEERQTLCNMAIEAGGKNGVIPADHVTTAYVDARNAGNKPYEIFNADQNAKYFSKQRYDVGNLEPVVAKPHSPDNKALARDCRDTKIDRVYIGSCTGGKTEDFAAAARILQNQKVRVPTFLVPATQKVYNDIQTMTIGGRTLASIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKGAGIYLASPYTAAASAITGFVTDPREVFEFDKGKRWAVEDILSA 547          
BLAST of NO12G01120 vs. NCBI_GenBank
Match: OSX70878.1 (hypothetical protein BU14_0645s0001 [Porphyra umbilicalis])

HSP 1 Score: 712.2 bits (1837), Expect = 1.200e-201
Identity = 344/498 (69.08%), Postives = 404/498 (81.12%), Query Frame = 0
Query:   13 ATLAFANAFVPPTPTVTSSSRFGSIRMMAGSVDGAAASK----APPMTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSNTRHPAETLA 507
            AT A A     P     + +  G ++ +  +   A+ +     A PMTLTEKILA+AA + SV P DN+WV  D L+THDVCGPGT G+FK+EFG  AKVWD E+V+IIPDHYIFT D RANRNVDILRDFV EQ IKYFYDI DR ++K NPDYKGVCHVA+AQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGN+DA FV+GTGKLLLKVPA+M+F LNG +PDY++AKD+ILQ+IGDIG AGATYRAMEF GD I  LSMEERQTLCNMAIEAGGKNG+I ADA T+ ++  R   +RPY IF  D  A  ++ Y YD ++LEPVVAKPHSPDN+ LA++C D++IDRVYIGSCTGGKTEDF+AAARILQG +V VPTFLVPAT +V  DL ++T+ G TL  IFR AGCIDPA+PSCAACLGGP DTFAR+NEPL+CVSTTNRN+PGR GH +  IFLASPYTAAASA+TG VTDPR+V++F++ R P+ETLA
Sbjct:   23 ATCAPAGCAAVPARRTGNGAGAGGLKAVISTPRPASTAPGVKIATPMTLTEKILAKAAERGSVRPGDNIWVNTDVLMTHDVCGPGTIGVFKREFGEDAKVWDTEKVVIIPDHYIFTEDVRANRNVDILRDFVNEQGIKYFYDIIDRSDYKVNPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNSDAGFVMGTGKLLLKVPATMRFVLNGVLPDYIMAKDLILQIIGDIGTAGATYRAMEFSGDVIDALSMEERQTLCNMAIEAGGKNGLIAADATTEAFLAGRT--DRPYEIFHTDGKAGTYADYTYDAATLEPVVAKPHSPDNKDLARNCADVRIDRVYIGSCTGGKTEDFLAAARILQGRQVCVPTFLVPATAKVASDLETITMNGETLKSIFRSAGCIDPAAPSCAACLGGPKDTFARINEPLVCVSTTNRNYPGRQGHSEGQIFLASPYTAAASAITGKVTDPRKVYDFNDVRRPSETLA 518          
BLAST of NO12G01120 vs. NCBI_GenBank
Match: XP_005708866.1 (3-isopropylmalate dehydratase large subunit [Galdieria sulphuraria] >EME32346.1 3-isopropylmalate dehydratase large subunit [Galdieria sulphuraria])

HSP 1 Score: 704.5 bits (1817), Expect = 2.400e-199
Identity = 340/488 (69.67%), Postives = 390/488 (79.92%), Query Frame = 0
Query:   21 FVPPTPTVTSSSRFGSIRMMAGSVDGAAASKAPPMTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSNTRHPAETLASA 509
            F P T TV       S R +A SV     S   PMTLTEKIL++AA +  V P +N+WV  D L+THDVCGPGT G+FK+EFG  AKVWD E+VIIIPDHYIFT+D RANRNVDILR+F +EQNIKYFYDI DR  F  NPDYKGVCH+A+AQEGHTRPGEVLFGTDSHTCNAGAFG FATGIGNTDA F+LGTGKLL+KVPA+MKF  +G++PDYLLAKD+ILQ+IGDI V+GATYR +EF GD I QLSMEERQTLCNMAIEAGGKN +IP D  T EY+  R    R Y +FQ D  A  +S   Y    LEPVVAKPHSPDNR LAK+C D+K+DRVYIGSCTGGKTEDF+AAARI +  KV +PTFLVPATR+VYDD+Y L+IGG+TLAQIF  AGCI PA PSCAACLGGP DTFAR+NEPL+CVSTTNRNFPGRMG KD  ++LASPYTAAA+A+TGYVTDPR+V++F      A +L  +
Sbjct:  186 FQPLTATVAPPK---SSRHVASSVSN---SVQHPMTLTEKILSKAANRPCVKPGENIWVNVDVLMTHDVCGPGTIGIFKREFGENAKVWDPEKVIIIPDHYIFTADQRANRNVDILREFAREQNIKYFYDIKDRQNFLNNPDYKGVCHIALAQEGHTRPGEVLFGTDSHTCNAGAFGMFATGIGNTDAGFILGTGKLLIKVPATMKFVFHGDMPDYLLAKDLILQIIGDISVSGATYRTLEFSGDIISQLSMEERQTLCNMAIEAGGKNAVIPCDQTTSEYLKGRT--QRSYEVFQTDSSADLYSHREYITHQLEPVVAKPHSPDNRDLAKNCSDVKVDRVYIGSCTGGKTEDFIAAARIFKDRKVKIPTFLVPATRQVYDDIYRLSIGGQTLAQIFEQAGCIGPAPPSCAACLGGPKDTFARINEPLVCVSTTNRNFPGRMGSKDGQVYLASPYTAAATALTGYVTDPRQVYDFGTEHRSAYSLVDS 665          
BLAST of NO12G01120 vs. NCBI_GenBank
Match: WP_015204407.1 (3-isopropylmalate dehydratase large subunit [Crinalium epipsammum] >AFZ14302.1 homoaconitate hydratase family protein [Crinalium epipsammum PCC 9333])

HSP 1 Score: 699.5 bits (1804), Expect = 7.800e-198
Identity = 323/437 (73.91%), Postives = 380/437 (86.96%), Query Frame = 0
Query:   55 MTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPRE 492
            MTLTEKILARA+G+  V P DN+WV  D L+THDVCGPGT G+FK+EFG  AKVWD E++++IPDHYIFT+D RANRNVDILRDF +EQ IKYFYDITDR +FKANPDYKGVCH+A+AQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDA F++GTGKLL+KVPA+M+F LNGE+P YLLAKD+ILQ+IGDIGVAGATYRAMEF G  I  LSME+R TLCNMAIEAGGKNG +  D  T EYV  R+  N+P+     D DA+++S   YD+S LEPVVAKPHSPDNRALA++CRD+KIDRVYIGSCTGGKT DF+ AA++L+G +V VPT++VPAT++VY+DL++    G+TL++I  DAGCI+PA+PSCAACLGGP DTF RMNEP +CVSTTNRNFPGRMG+K+AGI+LASPYTAAASA+TGYVTDPRE
Sbjct:    3 MTLTEKILARASGRSVVEPGDNIWVNVDLLMTHDVCGPGTIGVFKREFGADAKVWDTEKIVLIPDHYIFTADERANRNVDILRDFAKEQGIKYFYDITDRSDFKANPDYKGVCHIALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAGFIMGTGKLLIKVPATMRFLLNGEMPKYLLAKDLILQIIGDIGVAGATYRAMEFAGSTIQHLSMEDRMTLCNMAIEAGGKNGTVAPDETTFEYV--RDRTNKPFEPVYTDADARFYSDRQYDVSQLEPVVAKPHSPDNRALARECRDVKIDRVYIGSCTGGKTSDFMYAAQVLKGQQVKVPTYIVPATQKVYEDLFTTKYDGKTLSEILLDAGCIEPAAPSCAACLGGPKDTFGRMNEPEICVSTTNRNFPGRMGNKEAGIYLASPYTAAASAITGYVTDPRE 437          
BLAST of NO12G01120 vs. NCBI_GenBank
Match: WP_104546811.1 (3-isopropylmalate dehydratase large subunit [Chroococcidiopsis sp. TS-821] >PPS44338.1 3-isopropylmalate dehydratase [Chroococcidiopsis sp. TS-821])

HSP 1 Score: 699.5 bits (1804), Expect = 7.800e-198
Identity = 323/437 (73.91%), Postives = 382/437 (87.41%), Query Frame = 0
Query:   55 MTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPRE 492
            MTLTEKILA+A+G+  V P +N+WV  D L+THDVCGPGT G+FK+EFG  AKVWD E++++IPDHYIFT+D RANRNVDILR+F +EQ IKYFYDITDR  FKANPDYKGVCH+A+AQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDA F++GTGKLL+KVPA+M+F LNGE+PDYLLAKD+ILQ+IGDIGVAGATYR MEF G+A+ +++MEER TLCNMAIEAGGKNG I  D  T EYV AR   N+P+  F  D DAK++S   YD+S LEPVVAKPHSPDNRALA++CRD+KIDRVYIGSCTGGKT DFV AARIL+G++V VPT++VPAT++VY+DL++    G+TL++IF ++GCI+PA+PSCAACLGGP DTF RMN+P +CVSTTNRNFPGRMG K A I+LASPYTAAASA+TGYVTDPRE
Sbjct:    3 MTLTEKILAKASGRSVVEPGENIWVDVDVLMTHDVCGPGTIGVFKREFGEDAKVWDAEKIVLIPDHYIFTADERANRNVDILREFAREQGIKYFYDITDRANFKANPDYKGVCHIALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAGFIMGTGKLLIKVPATMRFVLNGEMPDYLLAKDLILQIIGDIGVAGATYRTMEFAGEAVQRMTMEERMTLCNMAIEAGGKNGTIAPDETTYEYVRART--NKPFESFYTDSDAKFYSDRTYDVSQLEPVVAKPHSPDNRALARECRDVKIDRVYIGSCTGGKTTDFVNAARILKGHQVKVPTYIVPATQKVYEDLFTYKYDGQTLSEIFLNSGCIEPAAPSCAACLGGPKDTFGRMNKPEVCVSTTNRNFPGRMGEKTAQIYLASPYTAAASALTGYVTDPRE 437          
BLAST of NO12G01120 vs. NCBI_GenBank
Match: XP_005715507.1 (3-isopropylmalate dehydratase [Chondrus crispus] >CDF35688.1 3-isopropylmalate dehydratase [Chondrus crispus])

HSP 1 Score: 698.0 bits (1800), Expect = 2.300e-197
Identity = 340/500 (68.00%), Postives = 395/500 (79.00%), Query Frame = 0
Query:   20 AFVPPTPTVTSSS----------RFGSIRMMAGSVDGAAASKA--PPMTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEF-SNTRHPAETLA 507
            AFV P P  T S+          R   + + A S        A   PMTLTEK+LAR A K  V P DNVWV  D L+THDVCGP TFG+FK+EFG  AKVWD+ RVIIIPDHYIFT D RANRNVD LR F  EQ+IKYFYDI D   F+ANPDYKGVCH+A+AQEGHTR GE+LFGTDSHTCNAGAFG FATGIGNTDA F+LGTGKLL+KVP +M+F++NG +PDYLLAKD+IL +IGDIGV GATYRAMEF G  IG LSMEER TLCNMA+EAGGKNG+I AD  T+ Y+ AR  G++P  IF  D +A +++ Y Y+++ LEPVVAKPHSPDNRALAK+C D++IDR YIGSCTGGKTEDF+AAAR+LQG KV+VPTFLVPAT++VY+D+ +L I G TL  IF +AGCI    P CAACLGGP+DTFAR+NEPL+CVSTTNRNFPGRMG K+  I+LASPYT AASAVTGYVTDPREV++F +N RHP ETLA
Sbjct:    2 AFVAPLPVPTHSAAAARRPLTHRRHAVVAVAAPSRSTPTTKPAVTHPMTLTEKLLARGAEKPFVKPGDNVWVNVDALMTHDVCGPPTFGIFKREFGDDAKVWDRNRVIIIPDHYIFTEDKRANRNVDTLRQFATEQDIKYFYDIKDLSNFRANPDYKGVCHIALAQEGHTRSGEILFGTDSHTCNAGAFGMFATGIGNTDAGFILGTGKLLVKVPQTMRFEMNGNMPDYLLAKDLILNIIGDIGVGGATYRAMEFAGSTIGDLSMEERMTLCNMAVEAGGKNGLIAADHRTEAYLAAR--GSKPTEIFHTDEEASFYADYKYNVADLEPVVAKPHSPDNRALAKECSDVRIDRCYIGSCTGGKTEDFLAAARVLQGRKVAVPTFLVPATQKVYEDVETLRINGETLKDIFYNAGCIALGDPGCAACLGGPSDTFARLNEPLVCVSTTNRNFPGRMGDKEGQIYLASPYTTAASAVTGYVTDPREVYDFDANKRHPTETLA 499          
BLAST of NO12G01120 vs. NCBI_GenBank
Match: WP_087537719.1 (3-isopropylmalate dehydratase large subunit [Nostocales cyanobacterium HT-58-2] >ARV57392.1 3-isopropylmalate dehydratase [Nostocales cyanobacterium HT-58-2])

HSP 1 Score: 696.8 bits (1797), Expect = 5.000e-197
Identity = 320/437 (73.23%), Postives = 382/437 (87.41%), Query Frame = 0
Query:   55 MTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPRE 492
            MTL EKILA+A+G+  V P +N+WV  D L+THDVCGPGT G+FK+EFG  AKVWD E++++IPDHYIFT+D RANRNVDILRDF +EQ IKYFYDITDR  FKANPDYKGVCHVA+AQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDA F++GTGKLL+KVPA+M+F L+GE+P YLLAKD+ILQ+IGDI VAGATYR MEF G+A+ +++MEER TLCNM IEAGGKNG I  D  T EYV +R   N+P+     D DAK++S++ YD+S LEPVVAKPHSPDNRALA++CRD+KI+RVYIGSCTGGKTEDF+ AA++L+G+KV VPT++VPAT++VY+DL+ L   G+TL++IF DAGCI+P +PSCAACLGGP DTF RMNEP +CVSTTNRNFPGRMGHK+AGI+LASP+TAAASA+TGYVTDPRE
Sbjct:    3 MTLVEKILAKASGRSVVQPGENIWVNVDVLMTHDVCGPGTIGVFKREFGADAKVWDPEKIVLIPDHYIFTADERANRNVDILRDFAKEQGIKYFYDITDRANFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAGFIMGTGKLLIKVPATMRFVLDGEMPPYLLAKDLILQIIGDISVAGATYRTMEFTGEAVERMTMEERMTLCNMVIEAGGKNGTIAPDETTFEYVRSRT--NKPFESVYTDSDAKFYSEHRYDVSKLEPVVAKPHSPDNRALARECRDVKINRVYIGSCTGGKTEDFLHAAQVLKGHKVKVPTYIVPATQKVYEDLFKLKYEGQTLSEIFLDAGCIEPTAPSCAACLGGPKDTFGRMNEPEICVSTTNRNFPGRMGHKEAGIYLASPFTAAASALTGYVTDPRE 437          
BLAST of NO12G01120 vs. NCBI_GenBank
Match: WP_073627562.1 (3-isopropylmalate dehydratase large subunit [Scytonema sp. HK-05] >OKH60273.1 3-isopropylmalate dehydratase [Scytonema sp. HK-05] >BAY43655.1 homoaconitate hydratase family protein [Scytonema sp. HK-05])

HSP 1 Score: 696.4 bits (1796), Expect = 6.600e-197
Identity = 320/437 (73.23%), Postives = 381/437 (87.19%), Query Frame = 0
Query:   55 MTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPRE 492
            MTL EKILA+A+G+  V P +N+WV  D L+THDVCGPGT G+FK+EFG  AKVWD E++++IPDHYIFT+D RANRNVDILRDF +EQ+IKYFYDITDR  FKANPDYKGVCHVA+AQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDA F++GTGKLL+KVPA+M+F L+GE+P YLLAKD+ILQ+IGDI VAGATYR MEF G+A+ Q++MEER TLCNM IEAGGKNG I  D  T EY+  R   N+P+     D DAK++S++ YD+S LEPVVAKPHSPDNRALA++C D+KI+RVYIGSCTGGKTEDF  AA++L+G+KV VPT++VPAT++VY+DL++L    +TL++IF DAGCI+PA+PSCAACLGGP DTF RMNEP +CVSTTNRNFPGRMGHK+AG++LASPYTAAASAVTGYVTDPRE
Sbjct:    3 MTLVEKILAKASGRSVVEPGENIWVNVDVLMTHDVCGPGTIGVFKREFGADAKVWDSEKIVLIPDHYIFTADERANRNVDILRDFAKEQSIKYFYDITDRANFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAGFIMGTGKLLIKVPATMRFVLDGEMPPYLLAKDLILQIIGDISVAGATYRTMEFSGEAVEQMTMEERMTLCNMVIEAGGKNGTIAPDETTFEYLRGRT--NKPFESVYTDSDAKFYSQHRYDVSKLEPVVAKPHSPDNRALARECSDVKINRVYIGSCTGGKTEDFFHAAQVLKGHKVKVPTYIVPATQKVYEDLFTLKYEEQTLSEIFLDAGCIEPAAPSCAACLGGPKDTFGRMNEPEICVSTTNRNFPGRMGHKEAGVYLASPYTAAASAVTGYVTDPRE 437          
BLAST of NO12G01120 vs. NCBI_GenBank
Match: WP_099699887.1 (3-isopropylmalate dehydratase large subunit [Chroococcales cyanobacterium IPPAS B-1203] >PIG94434.1 3-isopropylmalate dehydratase [Chroococcales cyanobacterium IPPAS B-1203])

HSP 1 Score: 696.0 bits (1795), Expect = 8.600e-197
Identity = 322/437 (73.68%), Postives = 380/437 (86.96%), Query Frame = 0
Query:   55 MTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPRE 492
            MTLTEKILA+AAG+  V P +N+WV  D L+THDVCGPGT G+FK+EFG  AKVWD E++++IPDHYIFT+D RANRNVDILRDF QEQ+IKYFYDITDR  FKANPDYKGVCH+A+AQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDA F++GTGKLL+KVPA+M+F LNGE+PDYLLAKD+ILQ+IGDI VAGATYR MEF G+A+ +++MEER TLCNMAIEAGGKNG I  D  T EYV AR   ++P+  F  D DA ++S   YD+S LEPVVAKPHSPDNRALA++C D+KIDRVYIGSCTGGKT DF+ AARIL+G++V VPT++VPAT++VY+DL++    G+TL++IF ++GCI+PA+PSCAACLGGP DTF RMNEP +CVSTTNRNFPGRMG K A I+LASPYTAAASA+TGYVTDPRE
Sbjct:    3 MTLTEKILAKAAGRSVVEPGENIWVNVDVLMTHDVCGPGTIGVFKREFGADAKVWDAEKIVLIPDHYIFTADERANRNVDILRDFAQEQSIKYFYDITDRANFKANPDYKGVCHIALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAGFIMGTGKLLIKVPATMRFVLNGEMPDYLLAKDLILQIIGDISVAGATYRTMEFAGEAVQRMTMEERMTLCNMAIEAGGKNGTIAPDETTYEYVRART--DKPFESFYTDSDANFYSDRTYDVSQLEPVVAKPHSPDNRALARECHDVKIDRVYIGSCTGGKTTDFINAARILKGHQVKVPTYIVPATQKVYEDLFTYKHEGQTLSEIFLNSGCIEPAAPSCAACLGGPKDTFGRMNEPEVCVSTTNRNFPGRMGEKTAQIYLASPYTAAASALTGYVTDPRE 437          
The following BLAST results are available for this feature:
BLAST of NO12G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25901.16.000e-26788.91homoaconitate hydratase family protein [Nannochlor... [more]
AHN91991.18.500e-22180.48homoaconitate hydratase [Scytosiphon lomentaria][more]
OSX70878.11.200e-20169.08hypothetical protein BU14_0645s0001 [Porphyra umbi... [more]
XP_005708866.12.400e-19969.673-isopropylmalate dehydratase large subunit [Galdi... [more]
WP_015204407.17.800e-19873.913-isopropylmalate dehydratase large subunit [Crina... [more]
WP_104546811.17.800e-19873.913-isopropylmalate dehydratase large subunit [Chroo... [more]
XP_005715507.12.300e-19768.003-isopropylmalate dehydratase [Chondrus crispus] >... [more]
WP_087537719.15.000e-19773.233-isopropylmalate dehydratase large subunit [Nosto... [more]
WP_073627562.16.600e-19773.233-isopropylmalate dehydratase large subunit [Scyto... [more]
WP_099699887.18.600e-19773.683-isopropylmalate dehydratase large subunit [Chroo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010026NSK010026Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01120.1NO12G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591957gene_5267Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100048g8gene4609Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01120.1NO12G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01120 ID=NO12G01120|Name=NO12G01120|organism=Nannochloropsis oceanica|type=gene|length=1557bp
ATGGCACCAGCCACACCCGCTGTCGCCTTGCTGGGCGCCACGCTGGCGTT
TGCAAATGCTTTCGTCCCCCCTACCCCCACCGTCACCTCCTCCTCCCGCT
TCGGCAGCATTCGCATGATGGCTGGGAGTGTTGACGGCGCCGCTGCCTCC
AAAGCCCCTCCAATGACCTTGACGGAAAAAATCCTGGCCCGAGCCGCGGG
GAAGGAGAGTGTTGCTCCCAACGATAATGTGTGGGTGCAAGCTGATAACC
TGCTGACTCACGACGTGTGCGGACCAGGAACGTTTGGATTGTTCAAGAAG
GAGTTTGGCCCGCGTGCTAAGGTGTGGGACAAGGAACGAGTGATCATCAT
TCCGGACCACTACATCTTTACGTCCGACCCACGGGCGAATCGCAACGTGG
ACATCCTGCGTGATTTCGTACAGGAGCAAAATATCAAGTATTTTTACGAT
ATCACCGACCGAGGTGAATTCAAAGCAAACCCCGATTACAAGGGTGTGTG
CCACGTAGCCATGGCTCAGGAGGGACACACGCGACCGGGGGAGGTGTTGT
TTGGCACGGACTCGCACACGTGCAATGCAGGGGCCTTTGGTCAGTTTGCA
ACTGGAATCGGGAACACCGACGCAGCTTTTGTGTTGGGGACGGGCAAGCT
TTTGTTGAAGGTCCCGGCGTCGATGAAATTTGATTTGAATGGCGAGATCC
CTGATTATCTGCTGGCGAAAGACATCATCCTGCAGGTCATCGGTGACATT
GGTGTGGCGGGTGCAACATATCGTGCCATGGAGTTTGGGGGAGACGCCAT
CGGCCAACTTTCAATGGAGGAACGTCAGACGTTGTGTAATATGGCCATTG
AAGCCGGCGGGAAGAATGGTATTATCCCTGCGGATGCGGTTACCCAGGAG
TATGTGGACGCTCGCAATGCTGGGAACAGGCCTTATACGATTTTCCAGGC
GGACCCCGACGCGAAGTACCATTCGAAGTATGCTTATGATTTGAGCAGCC
TGGAGCCGGTGGTTGCCAAGCCGCACTCGCCTGATAACCGGGCGTTGGCG
AAGGATTGTAGGGACATCAAGATTGACCGTGTTTACATTGGGTCTTGCAC
GGGGGGGAAGACGGAGGATTTTGTGGCGGCGGCGCGGATTTTGCAAGGCA
ATAAGGTGTCGGTCCCGACATTTTTGGTGCCGGCCACGAGGAGAGTGTAT
GATGATTTGTACTCCTTGACGATCGGAGGGAGGACCCTCGCGCAGATCTT
TAGAGACGCTGGATGCATTGACCCGGCCTCGCCGAGCTGCGCGGCGTGCT
TGGGGGGACCGGCGGATACGTTCGCGAGGATGAATGAACCCTTGTTGTGC
GTGAGTACTACCAACAGGAATTTCCCCGGCCGCATGGGCCACAAGGACGC
AGGGATCTTCCTTGCCTCTCCTTACACTGCTGCTGCTTCAGCCGTGACTG
GGTATGTAACGGACCCGCGGGAGGTGTTTGAATTTTCAAATACGAGGCAC
CCGGCCGAGACGTTGGCCTCCGCCCCGGCGAAGAATAGCGTGTTTGCCAA
GAAGTAA
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protein sequence of NO12G01120.1

>NO12G01120.1-protein ID=NO12G01120.1-protein|Name=NO12G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MAPATPAVALLGATLAFANAFVPPTPTVTSSSRFGSIRMMAGSVDGAAAS
KAPPMTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKK
EFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYD
ITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFA
TGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDI
GVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQE
YVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALA
KDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVY
DDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLC
VSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSNTRH
PAETLASAPAKNSVFAKK*
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Synonyms
Publications