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Properties
| Property Name | Value |
|---|
| Description | RNA binding protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr12 | genome | chr12:338897..343824 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR035979 | RBD_domain_sf |
Homology
BLAST of NO12G01080 vs. NCBI_GenBank
Match: EWM25906.1 (RNA binding protein [Nannochloropsis gaditana]) HSP 1 Score: 217.2 bits (552), Expect = 2.500e-52 Identity = 136/362 (37.57%), Postives = 182/362 (50.28%), Query Frame = 0
Query: 529 DDNVETVEILKQTLATLLELDGSMSPERGFYPDDLRVKLSLSPPLWEEIYDGAKIVPNRSNRLYRSRVRRLIW--------------------------------------------------------------------------------MPDAGAASAAAAEELVEEQMECEEPTPFVAIKNLSSDFVSLDLLRLIQGCSPNYKVAPWDLLSLR---RKGRRGGGVAYLTVGNVKLAQKICDGLEGRKFDGKRLRTEFTLGKPCRDVYVAGVGGMEGWRVREVMEEWGEVLRVEGKNGDRKEKDSDFAFVNYAETGDAVAAIKAIYRCDGEIETNIDNELLSLKATFRPFKGRANPHA 808
+D + VE L L LLE++ +M+ RG+ PD+L+ + +SP LW+EIY+ A+I+P+R NRLYRSRVRRL+ +P A A V +QMECEE TPFVAI+NLS D DLLRL+Q +P YK+ DLL LR GRR G VAYL++ NV LA+++ +G+ G F+G+RL T +TLG PC DVYV GV ME V +M+ WG+V+RV G G KE+ AFV +A +A A+KAI G ++ N S+KATFRPFKGR+ +A
Sbjct: 247 EDPADVVEELTGALDKLLEIEETMTLHRGYAPDNLQKNIGISPRLWDEIYEKARIIPSRGNRLYRSRVRRLVTYLERRLNLPTRLLPYPEEQRREMQEYARGRSSSPARRPSRGQGPRDAGDRRDFERRLPSMDRQARGRPGQEENSRHRVDPLPPRKPAGVDAGASRVAKQMECEEVTPFVAIRNLSRDLAFSDLLRLLQSHAPTYKIQAADLL-LRPSGGNGRREGFVAYLSMANVTLAERLREGVRGIVFEGQRLSTGYTLGVPCADVYVDGVEEMEEEEVAALMQRWGQVVRVTGVKGTPKERHRTSAFVTFANVQEATEAVKAINDSKGAVKIT-RNSFRSMKATFRPFKGRSFANA 606
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G01080 ID=NO12G01080|Name=NO12G01080|organism=Nannochloropsis oceanica|type=gene|length=4928bp
ATGGCGGCCATCAGCTTGGATGCCATCTACGACATTGACCTGGCTCTTAC
CACCACGGgtacgtgactttctggtgtccttgctttccccccatccccct
ccacccgcgctcacccctgacatcttcccatttcaaacccgccacagATA
CGGACCCGCAACAGCACGCAACGCAGCAGCAGGAGCAATACACAACGCTC
CTTCAAGTCGTGCAGAATCCTTCTAATGCCGACGAACGTGTCTTAAGCCT
GGCTTGCGCCCTGTTGGGGCGTCACGCTGGCCTCGTGCCCACTCTCGCTT
CCTCTGCCGCCACCGCGGTCGTGGGTCTCTTCAACGTCTCACCCACCCGC
GAGAGCACGCCCATCACGGCCTCGCTTTCCATGGCTGCGGGTGATGCAGC
GATTTCGGAGGCGTCTCTTGCCTTGCCCACCGTCCCTACGTTTGCGCAGA
GGGTCCGCAAGAGTGCGGCGACCGCTCTGGTCAAGCTCGTGCAAGTGATG
ATTGCCTCTGCATCTTCTTCATCTACTGCCGTCGACACTTCGGCATGTGA
AACATTCCGTGGGCAACTGACATTACTGCTCGAATCTTTGCAGGAGGGGG
AGAATGATGGACTGGGAAAGGAGTTGGGCAAGGCCATGGAGCTGTTGAAA
CAGCAGCTTCAGCATTTACAGCAGCAGGAGGTGAAGGAGGGAGAGATGAT
TGCGTCAAAGACCACGCCGAAGAATACGATGGAGCTTGCGTGCGACGTGT
CCATTAAGACACAGAATCTCATGGTGGAGGCTGTGGAGGGCAGTGGCAAT
CCGGACGAGATGCAAGCTGAGACTACAGCGACGACAGAGGATGCAGCTGT
AGCCATGTTCCCCTCGGCGGCGCCTCATGTCTGGGATCCATCCTCTGCTA
ACGAAGTGTTGGATGTGATCAAAGGAGCGGAGGAAGGAGGGAAGAGGAAA
GGGAAGGAGGATAGGAGGGAGGAGGACGATGCTGTATCGAGTCAGCAGTC
GGTGCGCATGCCCTGCGGTAGTGAGAGGGACCAGGTCCCGGACGGCCACT
TCGATGATGACGCAGGGGCGTTGATCTATCACGACCACGGGGAAGTCACC
GAGGGAAAGATAGAGGCCAAAGAGGGGAGGAAGGAGGAGAGCCAGATTGG
GGGGGGGCTGACCTGTAGCAGCAGCAGCCTTAGCAACAATGTGACTGTTG
CTCAGAAGGAGGACGAGGGAGCGAAGGAAGGGCAAGCTTCTTCTACCCCC
CGCGGCCGCAGGAACAGCAACAACATCACGACCAAAGAGGCGGTGGACCG
AAAGGTGCAGAAATCTGATCGTAGCCCTTCCTCTTCCTCGTCCTCCTCCT
TCTCCCGCTCTTCCCCTCGACGTGCTTCCGCCTCCCCCATGACCAAGGCC
CGCAACAGCCGCTCTCGCTCTCGCTCTCGCTCCTGCTCCATGTCACGCTC
GCGTAGCCGTAGCATGAGTTGGGGGAGCAGCAATAGCAATGGCAGCAGGA
GTTGGAGCAGGAGCAGGAGCAGGAGCCTCAGCAGTAGCCGTGGTAAGGAC
GATCCGAGGGAATACGGGAAGAAGCGTTCCTCTTACGGCAGCACCAGGAA
CAGCAACGGCAGCGGCAGGGGGAACAATGGAAAAAGAGAGGATTCGAACG
GGAGGGCGCTGAAGAAGACATACGACGACAATGTCGAAACCGTTGAGATA
CTCAAGCAGACGTTGGCCACGTTACTGGAGCTAGACGGAAGCATGAGTCC
CGAACGTGGGTTCTATCCTGATGACCTTCGCGTCAAGCTTTCCTTGTCCC
CTCCGCTGTGGGAGGAAATATACGACGGAGCCAAGATTGTGCCCAATCGA
TCCAACCGCCTTTATCGCTCTCGTGTGCGGAGGTTGATCTGgtatgtgga
ggccaggctggggttgccctcgagtctcagagcgcttcgaccgggggagg
ggctggaggaaaagagaatggcgggggagggagggggagggggtacggga
ggaggaatggagagaagaaggagggttatgagcggttgggaggcaggagg
ggcgacgagagggccagGATGCCTGATGCTGGTGCTGCTAGTGCTGCTGC
TGCTGAGGAGCTCGTGGAGGAGCAGATGGAGTGCGAGGAGCCAACGCCGT
TTGTGGCGATCAAGAACTTGAGCAGgtgcggacatttcttggatttttct
tattcttctccttcttttcttttatctttggctggtgcggcgtgatgtgg
tgtcggtaaagtatgctttctggctctggatagaggacattggcacgggc
atgcgcatgcgtgtctgtccgtcctgcttttcccttttggtctttgattt
tgacaggcctgcacggaagaatcgaatgtggacacactgaaattgggcgt
ggacacattgacgagttggcaagtgggccctgtttggagtccttgacttt
tttgttgatatgtggttttgagctgtgagcggagagaacatatttgggtc
tacgtttccgctgcagttgtcagatagtcttttttttgactcgtcgacag
ccacaaagttgcacccccttgggattcgatcgatatgttaaaggactttg
gtcgacggccacactaagagatttgttttggtcagatggttgtattactg
tgccgcatcgtaccagttgtgcaacatggattaagtagtcggtcgaactt
aattggaaatcttttgattttgaccttttgacgtgttagcgtacatgcca
tttagttgctgctgcactagcagcagcaacagctgcggagatttaagtcc
catcctgcacttgctacttctcttagctcctctgattcgatgcgagcgag
agagtatttagagactcttgattcgagagagttacgattcgagatagcag
agcgcacgcactttgcatggcttggtgatggacatgccttgcccgccctt
cataagcaagcaaagcagtatatcatttatattcaagcaattgcccctcc
tttcgacctaccttccacagccggaagtggtgggacattgacgaggacca
agagagagaaaatagagagttagatagaggtagcgagaatgagaattgga
ctctcacttcacttgcattctctttcttttgattactctcttacctactc
ttaccttcacgccttgagaataatgtatgcctctcccatgaccctctccc
ccttcccctctcatccctctatatctgtttttacgacattggaccgaaaa
aaaaaacaatcccaactctcacacccgtcccttccatcccaaccccaccg
tctccctccatccgtgcagCGACTTTGTCTCCCTCGACCTTCTCCGTCTG
ATTCAAGGCTGCTCCCCCAACTATAAGGTGGCTCCTTGGGACCTCCTTTC
CCTTCGTCGCAAAGGAAGAAGGGGAGGAGGGGTGGCGTACCTGACGGTGG
GGAATGTGAAGCTAGCACAGAAAATATGTGATGGACTGGAGGGGAGGAAG
TTTGATGGGAAGAGGCTCAGGACGGAATTTACTTTAGGGAAGCCTTGTAG
GGATGTGTATGTGGCGGGGGTAGGAGGGATGGAGGGATGGAGGGTGAGGG
AGGTGATGGAGGAATGGGGGGAGGTCTTGAGGGTGGAAGGGAAGAATGGC
GATCGCAAAGgtgagaagcgcggaaaggagtgaggaatagatggcgatgt
gatcgagtgtatgtctgtgtgcatgatgaatccccccccctctctcttct
cctgttgtcttactcatggacctttctccctccacccgttcccccctctc
ctccctctctctcaacccctagAAAAAGATTCAGACTTTGCCTTTGTCAA
CTACGCCGAGACCGGGGACGCCGTGGCTGCCATCAAAGCCATCTACCGGT
GCGATGGGGAGATCGAAACTAACATCGACAACGAGCTTTTGTCGCTCAAG
GCGACTTTCCGTCCCTTCAAAGGACGGGCCAATCCGCATGCAGGCGGCCA
AGGTGGGAGGGAGGGAGGGGAGAGTGTCGACGGGGAACAGCCGGGAGGGA
GGGATGGAGGAAGGGATCGGGACTCCTTTGGAAAGCGGGGGGGGGCGGCT
TACTCAGCCCAGCAGTCGATAGATGGCGCGGACCGTTTCTCCCGTCGAGG
GATTGAGGGAAAAGGAGGACGAGGAGGAGGAGCAGATCGACACGGTCGCT
CTGCTGGCGCTCGTTCTCGTTCTCCTGTGCGTCGTGCTGCTGTGTCCACT
GGCAGCGGTAGCGCGCGGGGCCGCTCTCCCCCGGCCACCTCCAGTTCCAC
TGCCCCTTTCCACCACCTCAAGAGCAATAAGGGAGGGCGTGCTACGTCTC
GCTCCCACGACTCCTACGACTCCGCCGGCAGCCACAGCCGCAGCCGCTCC
CACTCTTTCAGCATGGGGCGAAGCTATTCTCGCTCGCGCTCCTTCGGTCG
TCCCCCCCACGAGCAGCTGCAGCAGAACCGGTACCAACCCCGACAGCAGC
AGCAGCCGCGTTTCCGCCGTTACTCCCGTTCTAATTCTCCCGGCCGGCTT
GGGGGGGATATGGGCGGGCGTCGGGCATCGGTGCGTTATCTCGAGCAGCA
GCAGCGGCAGCATCAGAAGGGAGGAGGGACGTTTAATGGTGGGCCCAGCA
GCAGCAGCAGTAGCAGTAGCGGCAAGCACCACAAGCCTTCCCACCAGTCA
CGCAAGCGAAATCGCTCCATGGATACCCGCGGTGGCAACGAGCAGCAGCA
GCAGCAGCAGCAGCAGCACTACCACTACTCGAACAACGGCGACGGCAATA
ACTGGAATGGGGGAAAGGGAAGGAAGGACGGAGGGGAGCCGCGGAAGTAC
CAGCGGCACGCGAGAGATAGCCCGATGCGACGGGTTTCCGTGACGGCGGC
GGTGGCGGGAGCTCACACAAACCGCTAG back to topprotein sequence of NO12G01080.1 >NO12G01080.1-protein ID=NO12G01080.1-protein|Name=NO12G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1119bp
MAAISLDAIYDIDLALTTTDTDPQQHATQQQEQYTTLLQVVQNPSNADER
VLSLACALLGRHAGLVPTLASSAATAVVGLFNVSPTRESTPITASLSMAA
GDAAISEASLALPTVPTFAQRVRKSAATALVKLVQVMIASASSSSTAVDT
SACETFRGQLTLLLESLQEGENDGLGKELGKAMELLKQQLQHLQQQEVKE
GEMIASKTTPKNTMELACDVSIKTQNLMVEAVEGSGNPDEMQAETTATTE
DAAVAMFPSAAPHVWDPSSANEVLDVIKGAEEGGKRKGKEDRREEDDAVS
SQQSVRMPCGSERDQVPDGHFDDDAGALIYHDHGEVTEGKIEAKEGRKEE
SQIGGGLTCSSSSLSNNVTVAQKEDEGAKEGQASSTPRGRRNSNNITTKE
AVDRKVQKSDRSPSSSSSSSFSRSSPRRASASPMTKARNSRSRSRSRSCS
MSRSRSRSMSWGSSNSNGSRSWSRSRSRSLSSSRGKDDPREYGKKRSSYG
STRNSNGSGRGNNGKREDSNGRALKKTYDDNVETVEILKQTLATLLELDG
SMSPERGFYPDDLRVKLSLSPPLWEEIYDGAKIVPNRSNRLYRSRVRRLI
WMPDAGAASAAAAEELVEEQMECEEPTPFVAIKNLSSDFVSLDLLRLIQG
CSPNYKVAPWDLLSLRRKGRRGGGVAYLTVGNVKLAQKICDGLEGRKFDG
KRLRTEFTLGKPCRDVYVAGVGGMEGWRVREVMEEWGEVLRVEGKNGDRK
EKDSDFAFVNYAETGDAVAAIKAIYRCDGEIETNIDNELLSLKATFRPFK
GRANPHAGGQGGREGGESVDGEQPGGRDGGRDRDSFGKRGGAAYSAQQSI
DGADRFSRRGIEGKGGRGGGADRHGRSAGARSRSPVRRAAVSTGSGSARG
RSPPATSSSTAPFHHLKSNKGGRATSRSHDSYDSAGSHSRSRSHSFSMGR
SYSRSRSFGRPPHEQLQQNRYQPRQQQQPRFRRYSRSNSPGRLGGDMGGR
RASVRYLEQQQRQHQKGGGTFNGGPSSSSSSSSGKHHKPSHQSRKRNRSM
DTRGGNEQQQQQQQQHYHYSNNGDGNNWNGGKGRKDGGEPRKYQRHARDS
PMRRVSVTAAVAGAHTNR* back to top
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