NO12G01060, NO12G01060 (gene) Nannochloropsis oceanica

Overview
NameNO12G01060
Unique NameNO12G01060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length699
Alignment locationchr12:334048..334746 +

Link to JBrowse

Properties
Property NameValue
DescriptionMD-2-related lipid-recognition
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:334048..334746 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014756Ig_E-set
IPR003172ML_dom
Homology
[Close]
BLAST of NO12G01060 vs. NCBI_GenBank
Match: EWM25905.1 (MD-2-related lipid-recognition [Nannochloropsis gaditana])

HSP 1 Score: 106.3 bits (264), Expect = 8.600e-20
Identity = 50/136 (36.76%), Postives = 80/136 (58.82%), Query Frame = 0 
Query:   13 LLKLMMASPSSGAPVTFSPCSDSATPYILESLNITPYPPRAGETVEIVAVGKSSIAVVDGSTIHTSFKQGPLTTPEKTYNLCSISSVTCPLAAGSLITTVMQHEIGRFAGDGIASGRVWVLDPKGKELACVNVAVE 149
            L+ L++   +  +PV F+ C +  +P +LES+ I PYP +AG T  +    +S++A+  GS +  SFK+GP     K Y++CS+S   CP+ A SL+   +  +I   A  G+A+G V V D  G E+AC+ V V+
Sbjct:   25 LVSLIVVPCALASPVLFTSCHEDESPLMLESMEINPYPVKAGGTSSVAVTARSTVALEQGSYVEMSFKEGPFMGAVKKYDMCSMSDQDCPIPANSLVKFELDFQINSRASKGVATGNVLVSDHTGAEIACIRVPVQ 160
[Close]
BLAST of NO12G01060 vs. NCBI_GenBank
Match: XP_012749904.1 (hypothetical protein SAMD00019534_101990, partial [Acytostelium subglobosum LB1] >GAM27024.1 hypothetical protein SAMD00019534_101990, partial [Acytostelium subglobosum LB1])

HSP 1 Score: 63.5 bits (153), Expect = 6.400e-7
Identity = 39/121 (32.23%), Postives = 64/121 (52.89%), Query Frame = 0 
Query:   29 FSPCSDSATPYILESLNITPYPPRAGETVEIVAVGKSSIAVVDGSTIHTSFKQGPLTTPEKTYNLCSISS-VTCPLAAGSLITTVMQHEIGRFAGDGIASGRVWVLDPKGKELACVNVAVE 149
            ++ C  S+  + ++++ I P PP  G+ V I A G  +  + DG T+H + K G +T   +   LC+  + + CP+AAGS  T      I      G  S  V + D  G+E+AC+NVA++
Sbjct:   29 WTSCGSSSDHFAIDTVLIVPDPPVKGQVVNITASGTLNEQITDG-TVHITLKYGFITILNQNEPLCNADNPLPCPIAAGS-YTRSFATMIPSTVPSGKYSANVVINDQNGQEVACINVALQ 147
The following BLAST results are available for this feature:
BLAST of NO12G01060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25905.18.600e-2036.76MD-2-related lipid-recognition [Nannochloropsis ga... [more]
XP_012749904.16.400e-732.23hypothetical protein SAMD00019534_101990, partial ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01060.1NO12G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01060.1NO12G01060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01060 ID=NO12G01060|Name=NO12G01060|organism=Nannochloropsis oceanica|type=gene|length=699bp
TGATTTGATAAAAATGACACACAATAGTTCCACAACTCACGCTTTATACC
CTTACTCCTCTCGTTCACGCACCCAAACCCCAAAAGGGGTCAAGCATGTT
TCGTCGACGCTTCGTTCTTCCGATTGCAGGGCTCCTCAAGTTGATGATGG
CCTCTCCGTCCTCGGGTGCGCCTGTCACTTTTAGTCCCTGCAGTGACAGC
GCCACACCCTATATTCTCGAATCATTAAATATTACTCCTTACCCTCCCCG
GGCCGGGGAGACAGTGGAGATCGTGGCGGTGGGAAAATCCAGCATTGCTG
TAGTTGACGGCAGCACCATCCATACGAGCTTCAAGCAAGGTCCCCTGACT
ACACCGGAGAAGACGTACAACCTTTGTTCGATCTCAAGCGTCACATGTCC
TTTGGCAGCAGGTAGCTTAATTACAACCGTCATGCAACATGAGATTGGGC
GCTTTGCGGGAGACGGCATTGCGAGTGGGCGAGTCTGGGTTTTGGACCCC
AAGGGGAAGGAACTAGCGTGTGTCAATGTTGCAGTCGAGACGCGAAACCA
CTGAGCGAAAAGAATATTTAAAGACCGGCTAGCAAAAAATATCAGTATAA
ACGACGGGAAGACACATGCGCTGTCATGTAAGAGATGTATTCAAGGATGT
GGAAAACATAGGCAACGGCGTCTCGGAACTATAGATAACCAACGGTCGT
back to top

protein sequence of NO12G01060.1

>NO12G01060.1-protein ID=NO12G01060.1-protein|Name=NO12G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MFRRRFVLPIAGLLKLMMASPSSGAPVTFSPCSDSATPYILESLNITPYP
PRAGETVEIVAVGKSSIAVVDGSTIHTSFKQGPLTTPEKTYNLCSISSVT
CPLAAGSLITTVMQHEIGRFAGDGIASGRVWVLDPKGKELACVNVAVETR
NH*
back to top
Synonyms
Publications