NO12G00960, NO12G00960 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G00960 vs. NCBI_GenBank
Match: XP_002180939.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47591.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 425.2 bits (1092), Expect = 3.000e-115 Identity = 225/505 (44.55%), Postives = 305/505 (60.40%), Query Frame = 0
Query: 55 VYWAVTVVLI-VWYSLRFTRKPPLLAMSRSNPSTFACQGYSLDTRRCIFQNVVVQRGVIYYYAEDPL--VATVPPMLCSMVNMPEIYAAPCDVRVISDPTAIATILAQTNKTENFNLGLALHRLNPGNAYHLLFEDMIPAMAMIYNASHITSNDPVPAILHTLKQQ---DVGIFLTDHH-AGTLMDRIFWKEFYPEVTVLPLSNNVSYHVKTLVVGTRTNCVHWNHCKVTNRTRGIFDPPEAAAALRKVVFHRYGIVEEGDDTAAPXXXXXXXXXXXXXXXXXXXXXPTPPRRVGPPRVTLIRRSTTRRIRNLEEVRSTIESVMGVSPHVVDMSDLGIKDQVLLAHNTDIFILVHGGAMANLLWLPPRALIIDIYPHGFLISYHSSIIHWIRKALEPVIELGHMPFQIETAEGQELLTGPMVPGCVCRSIPCQIHVFGTSALINVDVARFKEHLKEGFRAWKGAQRERGSYEKPVTPDEFERSQEEIERRRAAAPGYSSAPLCWE 553
++WA+ L +WY R L + S F CQG S DTRRC+F NVVVQ GV + A DP A P +LCS N PE + PCDVR +D A T+L T ++ F G+AL+RLNPGNAYH+LFEDMIP +A + + + T+ P + Q G+F+TD M+ FW E PEVTV+ + V YHV TL+ G+ C HW C+ TNR G+FDPP+AA R +VFHRYGI EE + + R PPR+TL++R+TTRRIRNL+EV+ +++ G +VDM++L +++Q+ L+H+TDI++LVHGGA+AN LWLPPRALIIDIYPHGF+IS S+++H IRKALEP +GH+PFQ+E GQE+L GP+ PGCVC + CQ HVF TSA I++D RF+ H++E W+ A +Y +P++P+EF + RR AA AP+CW+
Sbjct: 18 LFWAMVGALFPMWY---LVRSGVDLRPEYPSRSHFQCQGDSRDTRRCVFHNVVVQDGVFWLEAPDPRDPSAAPPSLLCSTTNGPEKHTKPCDVRFAADAFAWRTLLDATTESRRFATGVALYRLNPGNAYHVLFEDMIPIVANLLDRTGGTAVSYSPGHADVKQHQPRAPWGLFVTDRKITAKAMEDKFWNELLPEVTVVHPTTEV-YHVDTLLAGSGVPCSHWGLCRPTNRPVGLFDPPDAAITFRHLVFHRYGIQEEAPNAMSLP-------------------------RQNPPRITLVQRTTTRRIRNLQEVQDAVKAGTGTVARLVDMAELSLREQISLSHDTDIYVLVHGGALANTLWLPPRALIIDIYPHGFMISGRSALLHSIRKALEPAFAVGHLPFQVENTPGQEILEGPLAPGCVCSAFECQSHVFHTSAWIHIDPDRFQTHMQEALHIWREA-----NYTRPISPEEFRLQNNAEQARRDAAAAAIGAPVCWK 488
BLAST of NO12G00960 vs. NCBI_GenBank
Match: EWM29240.1 (putative glycosyltransferase aer61 [Nannochloropsis gaditana]) HSP 1 Score: 412.9 bits (1060), Expect = 1.500e-111 Identity = 223/530 (42.08%), Postives = 321/530 (60.57%), Query Frame = 0
Query: 33 PPQTKRWTSLMTKFVPKCCRGRV-----------YWAVTVVLIVWYSLRFTRKPPLLAMSRSNPSTFACQGYSLDTRRCIFQNVVVQRGVIYYYAEDPLVATVPPMLCSMVNMPEIYAAPCDVRVISDPTAIATILAQTNKTENFNLGLALHRLNPGNAYHLLFEDMIPAMAMIYNASHITSNDPVPAILHTLKQQDVGIFLTDHHAGTLMDRIFWKEFYPEVTVL-PLSNNVSYHVKTLVVGTRTNCVHWNHCKVTNRTRGIFDPPEAAAALRKVVFHRYGIVEEGDDTAAPXXXXXXXXXXXXXXXXXXXXXPTPPRRVGPPRVTLIRRSTTRRIRNLEEVRSTIESVMGVSPHVVDMSDLGIKDQVLLAHNTDIFILVHGGAMANLLWLPPRALIIDIYPHGFLISYHSSIIHWIRKALEPVIELGHMPFQIETAEGQELLTGPMVPGCVCRSIPCQIHVFGTSALINVDVARFKEHLKEGFRAWKGAQRERGSYEKPVTPDEFERSQEEIERRRAAAPGYSSAPLC 551
P +T R +S T+ P C+ + W +TV LR + P L S C G S +TR+C+F++V+V+ GVI+ Y P + +P +LCS VN P +A C++R++SD A +L + +K+ ++G+AL RLNP N YH +FED+IP +AM+ ++ S DP A+ L+Q+ G+F+TD+ +L+D W++ PEV ++ PL ++ V+ L+ GT+ +C HW HC+ T+R G+F+PP+AA + R+ VFHR+GI E ++TA T +G PRVTL++RS+TRR++NL E+ + +V G SP VVDMS+L +++QV LAH+TDI++LVHGGA+ANLLWLP A+I+DIYP+GF IS+HS I+HWIRKALEP + LGH PFQ+ ++EGQ LL GP+ GCVCRS+ CQIH+F T A I V V FK H+K+ R W R + Y TP EF + Q +I R A APLC
Sbjct: 20 PQKTTRTSSTCTQSSP--CQAMIASRKARLVLMLCWVLTVTSAALSFLRGKQLPVRLL----KESRVTCHGNSTETRQCVFRDVIVENGVIWLYKTHP-DSGIPRVLCSQVNQPSSFARECEIRIVSDGRKYAHLLRKASKSLLLDVGVALSRLNPSNVYHAIFEDLIPTIAMMRKVGNV-SVDPT-AMSDALRQRRWGVFITDNEGDSLLDGEIWRQILPEVAMVHPLGR--AHRVRKLIAGTQVSCAHWGHCQPTDRPSGLFNPPDAALSFRRFVFHRFGIEEGVEETA---------------------HASTSTIGLGVPRVTLVQRSSTRRLQNLGEIVEALTAVSGASPRVVDMSNLSVREQVGLAHDTDIYVLVHGGALANLLWLPEGAMIVDIYPYGFYISHHSGIVHWIRKALEPGLGLGHHPFQVNSSEGQVLLDGPLPAGCVCRSLECQIHLFATVASITVAVDAFKNHMKDALRLW----RIKRKYAAATTPAEFMKLQAQIVETRTMA--RDPAPLC 511
BLAST of NO12G00960 vs. NCBI_GenBank
Match: XP_005852603.1 (hypothetical protein NGA_2058100, partial [Nannochloropsis gaditana CCMP526] >EKU23229.1 hypothetical protein NGA_2058100, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 271.6 bits (693), Expect = 5.600e-69 Identity = 132/245 (53.88%), Postives = 164/245 (66.94%), Query Frame = 0
Query: 236 FWKEFYPEVTVLPLSNNVSYHVKTLVVGTRTNCVHWNHCKVTNRTRGIFDPPEAAAALRKVVFHRYGIVEEGDDTAAPXXXXXXXXXXXXXXXXXXXXXPTPPRRVGPPRVTLIRRSTTRRIRNLEEVRSTIESVMGVSPHVVDMSDLGIKDQVLLAHNTDIFILVHGGAMANLLWLPPRALIIDIYPHGFLISYHSSIIHWIRKALEPVIELGHMPFQIETAEGQELLTGPMVPGCVCRSIPCQ 481
FWKEF PE+ ++P S N YHV+ L+ GT T C HW HC+ NR RGIFDPP+AA LR +VFHRYGI+E PR+ PPRVTL++RS +R I NL+EV S IE MG SP VVDM+ L I++QVLLA+NTDIFILVHGGA+ ++LWLP RALIIDIYPHGF I +HS I+HWIRK++EP +GH+PF +ET+ GQ GP++ GCVC + CQ
Sbjct: 2 FWKEFLPEIIIVPPSKNHIYHVQNLLAGTGTPCAHWGHCQPDNRPRGIFDPPDAALNLRSLVFHRYGILEREQLVTI-----------------------RVPRK-DPPRVTLVQRSKSRCIYNLQEVVSMIEVQMGSSPKVVDMAQLSIEEQVLLAYNTDIFILVHGGALTHILWLPTRALIIDIYPHGFSIDHHSGIVHWIRKSMEPAYHIGHLPFAVETSVGQSTTQGPLISGCVCHTAGCQ 222 The following BLAST results are available for this feature:
BLAST of NO12G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G00960 ID=NO12G00960|Name=NO12G00960|organism=Nannochloropsis oceanica|type=gene|length=1757bpback to top protein sequence of NO12G00960.1 >NO12G00960.1-protein ID=NO12G00960.1-protein|Name=NO12G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bpback to top Synonyms
Publications
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