NO12G00960, NO12G00960 (gene) Nannochloropsis oceanica

Overview
NameNO12G00960
Unique NameNO12G00960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1757
Alignment locationchr12:306568..308324 -

Link to JBrowse

Properties
Property NameValue
DescriptionEGF domain-specific O-linked N-acetylglucosamine transferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:306568..308324 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO:0016757transferase activity, transferring glycosyl groups
Vocabulary: INTERPRO
TermDefinition
IPR007657Glycosyltransferase_AER61
Homology
BLAST of NO12G00960 vs. NCBI_GenBank
Match: XP_002180939.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47591.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 425.2 bits (1092), Expect = 3.000e-115
Identity = 225/505 (44.55%), Postives = 305/505 (60.40%), Query Frame = 0
Query:   55 VYWAVTVVLI-VWYSLRFTRKPPLLAMSRSNPSTFACQGYSLDTRRCIFQNVVVQRGVIYYYAEDPL--VATVPPMLCSMVNMPEIYAAPCDVRVISDPTAIATILAQTNKTENFNLGLALHRLNPGNAYHLLFEDMIPAMAMIYNASHITSNDPVPAILHTLKQQ---DVGIFLTDHH-AGTLMDRIFWKEFYPEVTVLPLSNNVSYHVKTLVVGTRTNCVHWNHCKVTNRTRGIFDPPEAAAALRKVVFHRYGIVEEGDDTAAPXXXXXXXXXXXXXXXXXXXXXPTPPRRVGPPRVTLIRRSTTRRIRNLEEVRSTIESVMGVSPHVVDMSDLGIKDQVLLAHNTDIFILVHGGAMANLLWLPPRALIIDIYPHGFLISYHSSIIHWIRKALEPVIELGHMPFQIETAEGQELLTGPMVPGCVCRSIPCQIHVFGTSALINVDVARFKEHLKEGFRAWKGAQRERGSYEKPVTPDEFERSQEEIERRRAAAPGYSSAPLCWE 553
            ++WA+   L  +WY     R    L     + S F CQG S DTRRC+F NVVVQ GV +  A DP    A  P +LCS  N PE +  PCDVR  +D  A  T+L  T ++  F  G+AL+RLNPGNAYH+LFEDMIP +A + + +  T+    P      + Q     G+F+TD       M+  FW E  PEVTV+  +  V YHV TL+ G+   C HW  C+ TNR  G+FDPP+AA   R +VFHRYGI EE  +  +                           R  PPR+TL++R+TTRRIRNL+EV+  +++  G    +VDM++L +++Q+ L+H+TDI++LVHGGA+AN LWLPPRALIIDIYPHGF+IS  S+++H IRKALEP   +GH+PFQ+E   GQE+L GP+ PGCVC +  CQ HVF TSA I++D  RF+ H++E    W+ A     +Y +P++P+EF       + RR AA     AP+CW+
Sbjct:   18 LFWAMVGALFPMWY---LVRSGVDLRPEYPSRSHFQCQGDSRDTRRCVFHNVVVQDGVFWLEAPDPRDPSAAPPSLLCSTTNGPEKHTKPCDVRFAADAFAWRTLLDATTESRRFATGVALYRLNPGNAYHVLFEDMIPIVANLLDRTGGTAVSYSPGHADVKQHQPRAPWGLFVTDRKITAKAMEDKFWNELLPEVTVVHPTTEV-YHVDTLLAGSGVPCSHWGLCRPTNRPVGLFDPPDAAITFRHLVFHRYGIQEEAPNAMSLP-------------------------RQNPPRITLVQRTTTRRIRNLQEVQDAVKAGTGTVARLVDMAELSLREQISLSHDTDIYVLVHGGALANTLWLPPRALIIDIYPHGFMISGRSALLHSIRKALEPAFAVGHLPFQVENTPGQEILEGPLAPGCVCSAFECQSHVFHTSAWIHIDPDRFQTHMQEALHIWREA-----NYTRPISPEEFRLQNNAEQARRDAAAAAIGAPVCWK 488          
BLAST of NO12G00960 vs. NCBI_GenBank
Match: EWM29240.1 (putative glycosyltransferase aer61 [Nannochloropsis gaditana])

HSP 1 Score: 412.9 bits (1060), Expect = 1.500e-111
Identity = 223/530 (42.08%), Postives = 321/530 (60.57%), Query Frame = 0
Query:   33 PPQTKRWTSLMTKFVPKCCRGRV-----------YWAVTVVLIVWYSLRFTRKPPLLAMSRSNPSTFACQGYSLDTRRCIFQNVVVQRGVIYYYAEDPLVATVPPMLCSMVNMPEIYAAPCDVRVISDPTAIATILAQTNKTENFNLGLALHRLNPGNAYHLLFEDMIPAMAMIYNASHITSNDPVPAILHTLKQQDVGIFLTDHHAGTLMDRIFWKEFYPEVTVL-PLSNNVSYHVKTLVVGTRTNCVHWNHCKVTNRTRGIFDPPEAAAALRKVVFHRYGIVEEGDDTAAPXXXXXXXXXXXXXXXXXXXXXPTPPRRVGPPRVTLIRRSTTRRIRNLEEVRSTIESVMGVSPHVVDMSDLGIKDQVLLAHNTDIFILVHGGAMANLLWLPPRALIIDIYPHGFLISYHSSIIHWIRKALEPVIELGHMPFQIETAEGQELLTGPMVPGCVCRSIPCQIHVFGTSALINVDVARFKEHLKEGFRAWKGAQRERGSYEKPVTPDEFERSQEEIERRRAAAPGYSSAPLC 551
            P +T R +S  T+  P  C+  +            W +TV       LR  + P  L       S   C G S +TR+C+F++V+V+ GVI+ Y   P  + +P +LCS VN P  +A  C++R++SD    A +L + +K+   ++G+AL RLNP N YH +FED+IP +AM+    ++ S DP  A+   L+Q+  G+F+TD+   +L+D   W++  PEV ++ PL    ++ V+ L+ GT+ +C HW HC+ T+R  G+F+PP+AA + R+ VFHR+GI E  ++TA                        T    +G PRVTL++RS+TRR++NL E+   + +V G SP VVDMS+L +++QV LAH+TDI++LVHGGA+ANLLWLP  A+I+DIYP+GF IS+HS I+HWIRKALEP + LGH PFQ+ ++EGQ LL GP+  GCVCRS+ CQIH+F T A I V V  FK H+K+  R W    R +  Y    TP EF + Q +I   R  A     APLC
Sbjct:   20 PQKTTRTSSTCTQSSP--CQAMIASRKARLVLMLCWVLTVTSAALSFLRGKQLPVRLL----KESRVTCHGNSTETRQCVFRDVIVENGVIWLYKTHP-DSGIPRVLCSQVNQPSSFARECEIRIVSDGRKYAHLLRKASKSLLLDVGVALSRLNPSNVYHAIFEDLIPTIAMMRKVGNV-SVDPT-AMSDALRQRRWGVFITDNEGDSLLDGEIWRQILPEVAMVHPLGR--AHRVRKLIAGTQVSCAHWGHCQPTDRPSGLFNPPDAALSFRRFVFHRFGIEEGVEETA---------------------HASTSTIGLGVPRVTLVQRSSTRRLQNLGEIVEALTAVSGASPRVVDMSNLSVREQVGLAHDTDIYVLVHGGALANLLWLPEGAMIVDIYPYGFYISHHSGIVHWIRKALEPGLGLGHHPFQVNSSEGQVLLDGPLPAGCVCRSLECQIHLFATVASITVAVDAFKNHMKDALRLW----RIKRKYAAATTPAEFMKLQAQIVETRTMA--RDPAPLC 511          
BLAST of NO12G00960 vs. NCBI_GenBank
Match: XP_005852603.1 (hypothetical protein NGA_2058100, partial [Nannochloropsis gaditana CCMP526] >EKU23229.1 hypothetical protein NGA_2058100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 271.6 bits (693), Expect = 5.600e-69
Identity = 132/245 (53.88%), Postives = 164/245 (66.94%), Query Frame = 0
Query:  236 FWKEFYPEVTVLPLSNNVSYHVKTLVVGTRTNCVHWNHCKVTNRTRGIFDPPEAAAALRKVVFHRYGIVEEGDDTAAPXXXXXXXXXXXXXXXXXXXXXPTPPRRVGPPRVTLIRRSTTRRIRNLEEVRSTIESVMGVSPHVVDMSDLGIKDQVLLAHNTDIFILVHGGAMANLLWLPPRALIIDIYPHGFLISYHSSIIHWIRKALEPVIELGHMPFQIETAEGQELLTGPMVPGCVCRSIPCQ 481
            FWKEF PE+ ++P S N  YHV+ L+ GT T C HW HC+  NR RGIFDPP+AA  LR +VFHRYGI+E                                PR+  PPRVTL++RS +R I NL+EV S IE  MG SP VVDM+ L I++QVLLA+NTDIFILVHGGA+ ++LWLP RALIIDIYPHGF I +HS I+HWIRK++EP   +GH+PF +ET+ GQ    GP++ GCVC +  CQ
Sbjct:    2 FWKEFLPEIIIVPPSKNHIYHVQNLLAGTGTPCAHWGHCQPDNRPRGIFDPPDAALNLRSLVFHRYGILEREQLVTI-----------------------RVPRK-DPPRVTLVQRSKSRCIYNLQEVVSMIEVQMGSSPKVVDMAQLSIEEQVLLAYNTDIFILVHGGALTHILWLPTRALIIDIYPHGFSIDHHSGIVHWIRKSMEPAYHIGHLPFAVETSVGQSTTQGPLISGCVCHTAGCQ 222          
The following BLAST results are available for this feature:
BLAST of NO12G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_002180939.13.000e-11544.55predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EWM29240.11.500e-11142.08putative glycosyltransferase aer61 [Nannochloropsi... [more]
XP_005852603.15.600e-6953.88hypothetical protein NGA_2058100, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR003ncniR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00960.1NO12G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626456gene_10882Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00960.1NO12G00960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00960 ID=NO12G00960|Name=NO12G00960|organism=Nannochloropsis oceanica|type=gene|length=1757bp
ATGTGCTCACCGTTCTCGTCCTCGACTCTACCACCGTTGTACCGTCTTGA
CAGGATGGATCAAGACGAGCTCGTGGAGGTCGTGCCAGgtgagtacttgc
gtgtcacaggagacgcaacatccacatcgcaatggattattggttgagat
tcttcttcccttcacgcacacactggacagGATGGCCCCCTCCTCAAACA
AAACGCTGGACCTCTCTTATGACAAAATTTGTCCCGAAATGCTGCCGAGG
GAGGGTTTATTGGGCAGTGACGGTCGTGCTGATTGTGTGGTATTCGCTGC
GATTTACACGTAAGCCACCATTATTGGCCATGAGTCGTTCCAATCCATCC
ACCTTTGCTTGCCAGGGATACTCTTTGGACACACGGCGGTGTATTTTCCA
GAATGTCGTCGTGCAAAGAGGCGTAATCTACTACTACGCAGAGGACCCGC
TTGTCGCGACGGTGCCTCCTATGCTCTGCTCAATGGTCAATATGCCTGAG
ATATATGCGGCCCCCTGCGATGTCCGCGTCATCTCCGACCCCACAGCCAT
TGCCACCATCCTCGCCCAAACAAACAAGACAGAGAATTTTAATCTAGGCC
TCGCCTTGCATCGCCTAAACCCGGGCAATGCCTACCATTTGCTGTTTGAA
GACATGATACCTGCCATGGCCATGATTTACAATGCAAGCCACATCACCAG
CAATGACCCAGTTCCCGCCATTCTCCACACGCTTAAGCAGCAAGACGTGG
GTATCTTCCTCACCGACCATCACGCTGGCACGCTCATGGACAGGATTTTT
TGGAAAGAGTTTTACCCAGAGGTGACCGTGCTGCCCTTGTCGAATAATGT
GTCCTACCACGTCAAGACCCTTGTGGTTGGTACAAGAACGAATTGCGTTC
ATTGGAACCACTGCAAAGTCACGAACCGCACCCGTGGTATTTTCGACCCA
CCCGAAGCTGCCGCGGCTCTAAGAAAAGTCGTCTTTCATCGGTACGGCAT
CGTTGAAGAAGGAGACGACACTGCTGCTCCTGCTTCTGCTCCTGCTGCTG
CTGCTGCTGCTCCTGCTCCTGCTGCTGCTCCTGCTGTTTTTACCCCTACT
CCTCCTCGGCGAGTAGGTCCACCAAGAGTCACGCTCATCCGACGCTCTAC
CACTCGGCGCATCCGAAATTTAGAAGAAGTACGGAGCACGATTGAGAGCG
TAATGGGTGTTTCCCCCCACGTTGTGGACATGTCAGATCTCGGCATCAAA
GATCAGGTCTTGCTCGCGCACAACACTGATATTTTCATCCTCGTCCATGG
CGGAGCTATGGCAAATCTCCTTTGGCTTCCGCCTCGCGCGTTAATCATCG
ATATCTACCCACATGGTTTCCTTATTTCCTACCATAGTAGCATCATACAT
TGGATTCGAAAGGCCCTCGAGCCGGTCATCGAATTGGGACATATGCCTTT
TCAAATAGAGACGGCGGAGGGACAGGAGCTCTTGACGGGACCAATGGTAC
CCGGATGTGTGTGTCGCTCCATTCCTTGTCAGATACACGTGTTTGGGACC
TCGGCGCTTATTAATGTGGATGTGGCGAGGTTCAAGGAGCATTTGAAGGA
GGGGTTCAGGGCGTGGAAGGGAGCACAGAGGGAAAGAGGGAGTTATGAGA
AGCCGGTGACACCCGATGAGTTCGAGAGGAGTCAGGAAGAGATAGAAAGG
AGGAGAGCGGCGGCGCCTGGTTATAGTTCGGCGCCGTTGTGCTGGGAGGG
GCCTTAG
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protein sequence of NO12G00960.1

>NO12G00960.1-protein ID=NO12G00960.1-protein|Name=NO12G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MCSPFSSSTLPPLYRLDRMDQDELVEVVPGWPPPQTKRWTSLMTKFVPKC
CRGRVYWAVTVVLIVWYSLRFTRKPPLLAMSRSNPSTFACQGYSLDTRRC
IFQNVVVQRGVIYYYAEDPLVATVPPMLCSMVNMPEIYAAPCDVRVISDP
TAIATILAQTNKTENFNLGLALHRLNPGNAYHLLFEDMIPAMAMIYNASH
ITSNDPVPAILHTLKQQDVGIFLTDHHAGTLMDRIFWKEFYPEVTVLPLS
NNVSYHVKTLVVGTRTNCVHWNHCKVTNRTRGIFDPPEAAAALRKVVFHR
YGIVEEGDDTAAPASAPAAAAAAPAPAAAPAVFTPTPPRRVGPPRVTLIR
RSTTRRIRNLEEVRSTIESVMGVSPHVVDMSDLGIKDQVLLAHNTDIFIL
VHGGAMANLLWLPPRALIIDIYPHGFLISYHSSIIHWIRKALEPVIELGH
MPFQIETAEGQELLTGPMVPGCVCRSIPCQIHVFGTSALINVDVARFKEH
LKEGFRAWKGAQRERGSYEKPVTPDEFERSQEEIERRRAAAPGYSSAPLC
WEGP*
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Synonyms
Publications