NO12G00950, NO12G00950 (gene) Nannochloropsis oceanica

Overview
NameNO12G00950
Unique NameNO12G00950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3953
Alignment locationchr12:304543..308495 +

Link to JBrowse

Properties
Property NameValue
DescriptionGlycosyl family 43
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:304543..308495 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR023296Glyco_hydro_beta-prop
IPR006710Glyco_hydro_43
Homology
BLAST of NO12G00950 vs. NCBI_GenBank
Match: EWM25924.1 (glycosyl family 43 [Nannochloropsis gaditana])

HSP 1 Score: 582.0 bits (1499), Expect = 1.300e-162
Identity = 265/338 (78.40%), Postives = 289/338 (85.50%), Query Frame = 0
Query:   16 VLPLRPCSAKLVLYDNTRPMLDTEGRILDAHDGTIQRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLSSGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGTYAGFAVATSSKPEGHFEQRRTVVPIAHLPAGDFHLFVDDDGTGYVLYSADFWITVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCCFCYQGSGIRVYTASSPLGPYTFQGQDIACQTXXXXXXXXXXXXXXXSPATAVADGPVSTPNQGCLFYSSDQASATRAQQNFVVEVRTAAGETEYLWTGDRWMQ 354
            +LPL   +AK VL+DNT+P  DTEGRILDAHDGTIQRFH DGPYYMHAVEYGLCQAPN+TGCDSPDRCGFRLDHN+SVY SWDLSSGSWAFQGYAF WTERPAGTLFRPSAVFNP T EY+LWWNYVYPNGTYAGFAVATSSKP+G FEQRR  V IAHLPAGDFHLFVDDDGTGYVLYSADFWIT++ELT DFL V+ + FDGFRGN SEWG+EAPVMFKR+G+YYIL GPMCCFCYQGSGIRVYTA+SPLGPYTFQG DIAC +               +   A  DGP+ TP QGCLFY +DQ S TRAQQNFV+EV+T+ GETEY+WTGDRWMQ
Sbjct:   15 LLPLPTATAKFVLFDNTKPAFDTEGRILDAHDGTIQRFHKDGPYYMHAVEYGLCQAPNITGCDSPDRCGFRLDHNLSVYTSWDLSSGSWAFQGYAFPWTERPAGTLFRPSAVFNPTTHEYILWWNYVYPNGTYAGFAVATSSKPQGPFEQRRAQVNIAHLPAGDFHLFVDDDGTGYVLYSADFWITIEELTPDFLGVSGRAFDGFRGNGSEWGFEAPVMFKRKGIYYILFGPMCCFCYQGSGIRVYTATSPLGPYTFQGDDIACAS--------KGTFAATAHTRADNDGPIPTPEQGCLFYGTDQISTTRAQQNFVIEVQTSGGETEYVWTGDRWMQ 344          
BLAST of NO12G00950 vs. NCBI_GenBank
Match: XP_005853946.1 (glycosyl family 43 [Nannochloropsis gaditana CCMP526] >EKU22413.1 glycosyl family 43 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 580.1 bits (1494), Expect = 5.100e-162
Identity = 264/338 (78.11%), Postives = 288/338 (85.21%), Query Frame = 0
Query:   16 VLPLRPCSAKLVLYDNTRPMLDTEGRILDAHDGTIQRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLSSGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGTYAGFAVATSSKPEGHFEQRRTVVPIAHLPAGDFHLFVDDDGTGYVLYSADFWITVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCCFCYQGSGIRVYTASSPLGPYTFQGQDIACQTXXXXXXXXXXXXXXXSPATAVADGPVSTPNQGCLFYSSDQASATRAQQNFVVEVRTAAGETEYLWTGDRWMQ 354
            +LPL   +AK VL+DNT+P  DTEGRILDAHDGTIQRFH DGPYYMHAVEYGLCQAPN+TGCDSPDRCGFRLDHN+SVY SWDLS GSWAFQGYAF WTERPAGTLFRPSAVFNP T EY+LWWNYVYPNGTYAGFAVATSSKP+G FEQRR  V IAHLPAGDFHLFVDDDGTGYVLYSADFWIT++ELT DFL V+ + FDGFRGN SEWG+EAPVMFKR+G+YYIL GPMCCFCYQGSGIRVYTA+SPLGPYTFQG DIAC +               +   A  DGP+ TP QGCLFY +DQ S TRAQQNFV+EV+T+ GETEY+WTGDRWMQ
Sbjct:   15 LLPLPTATAKFVLFDNTKPAFDTEGRILDAHDGTIQRFHKDGPYYMHAVEYGLCQAPNITGCDSPDRCGFRLDHNLSVYTSWDLSCGSWAFQGYAFPWTERPAGTLFRPSAVFNPTTHEYILWWNYVYPNGTYAGFAVATSSKPQGPFEQRRAQVNIAHLPAGDFHLFVDDDGTGYVLYSADFWITIEELTPDFLGVSGRAFDGFRGNGSEWGFEAPVMFKRKGIYYILFGPMCCFCYQGSGIRVYTATSPLGPYTFQGDDIACAS--------KGTFAATAHTRADNDGPIPTPEQGCLFYGTDQISTTRAQQNFVIEVQTSGGETEYVWTGDRWMQ 344          
BLAST of NO12G00950 vs. NCBI_GenBank
Match: XP_023329794.1 (uncharacterized protein LOC111702366 isoform X1 [Eurytemora affinis])

HSP 1 Score: 167.5 bits (423), Expect = 7.900e-38
Identity = 108/344 (31.40%), Postives = 155/344 (45.06%), Query Frame = 0
Query:   28 LYDNTRPMLDTEGRILDAHDGTIQRFHDDGPYYMHAVEY-------GLCQAPNVTGCDSP-DRCGFRLDHNVSVYASWDLSSGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGT------YAGFAVATSSKPEGHFEQRRTVVPIAHLPAGDFHLFV---DDDGTGYVLYSA---DFWITVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCCFCYQGSGIRVYTASSPLGPYTFQGQDIACQTXXXXXXXXXXXXXXXSPATAVADGPVSTPNQGCLFYSSDQASATRAQQNFVVEVRTAAGETEYLWTGDRW 352
            + DNT P  D +G ++D HDG ++R+ ++  ++ + + Y       G+    N  G  S   RCGFR DH V++Y S DL   +W F    F    RP G  FRP  +FN    EYVLW NY+ P  +       A   VA S  P G F        I     GDF+L +   D++   Y+ Y A   +  + +++LT ++      +     G+ S    EAP++F+R G YY+L G  CCFC QGSG  V+ +  PLGP+     DI                                 N G L          +AQ N+V+ ++ A  E EYL+TGD W
Sbjct:   21 IIDNTVPRTDADGNLMDVHDGNVERWEENNLFHWYGMGYQDCELEKGIIPPRNCPGIYSEFGRCGFRNDHAVNLYTSPDLH--NWTFVADIFPVESRPEGIYFRPKVIFNKKNKEYVLWINYLAPASSPLASYPDARLMVAVSPSPSGPFTIVTEKAGIEESGGGDFNLMIDPNDENAAAYIAYDAWGNNHALVIEQLTPNYYDALGSL--ASTGSISPINNEAPILFERSGWYYLLYGHTCCFCEQGSGAEVWVSQHPLGPWINMHTDI---------------------------------NPGFL-----GVRDIKAQCNYVITLQLADEEPEYLYTGDLW 322          
BLAST of NO12G00950 vs. NCBI_GenBank
Match: XP_023329796.1 (uncharacterized protein LOC111702366 isoform X2 [Eurytemora affinis])

HSP 1 Score: 152.9 bits (385), Expect = 2.000e-33
Identity = 102/329 (31.00%), Postives = 146/329 (44.38%), Query Frame = 0
Query:   43 LDAHDGTIQRFHDDGPYYMHAVEY-------GLCQAPNVTGCDSP-DRCGFRLDHNVSVYASWDLSSGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGT------YAGFAVATSSKPEGHFEQRRTVVPIAHLPAGDFHLFV---DDDGTGYVLYSA---DFWITVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCCFCYQGSGIRVYTASSPLGPYTFQGQDIACQTXXXXXXXXXXXXXXXSPATAVADGPVSTPNQGCLFYSSDQASATRAQQNFVVEVRTAAGETEYLWTGDRW 352
            +D HDG ++R+ ++  ++ + + Y       G+    N  G  S   RCGFR DH V++Y S DL   +W F    F    RP G  FRP  +FN    EYVLW NY+ P  +       A   VA S  P G F        I     GDF+L +   D++   Y+ Y A   +  + +++LT ++      +     G+ S    EAP++F+R G YY+L G  CCFC QGSG  V+ +  PLGP+     DI                                 N G L          +AQ N+V+ ++ A  E EYL+TGD W
Sbjct:    1 MDVHDGNVERWEENNLFHWYGMGYQDCELEKGIIPPRNCPGIYSEFGRCGFRNDHAVNLYTSPDLH--NWTFVADIFPVESRPEGIYFRPKVIFNKKNKEYVLWINYLAPASSPLASYPDARLMVAVSPSPSGPFTIVTEKAGIEESGGGDFNLMIDPNDENAAAYIAYDAWGNNHALVIEQLTPNYYDALGSL--ASTGSISPINNEAPILFERSGWYYLLYGHTCCFCEQGSGAEVWVSQHPLGPWINMHTDI---------------------------------NPGFL-----GVRDIKAQCNYVITLQLADEEPEYLYTGDLW 287          
BLAST of NO12G00950 vs. NCBI_GenBank
Match: WP_020566822.1 (hypothetical protein [Lewinella persica])

HSP 1 Score: 151.0 bits (380), Expect = 7.700e-33
Identity = 102/274 (37.23%), Postives = 136/274 (49.64%), Query Frame = 0
Query:    2 LSLSLVWSLLTVVGVLPLRPCSAKLVLYDNTRPMLDTEGRILDAHDGTIQRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLSSGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGTYAGFAVATSSKPEGHFEQRRTVVPIAH--LPAGDFHLFVDDDGTGYVLYSA--DFWITVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCCFCYQGSGIRVYTASSPLGPYT 272
            L L L  SL T        P   K V   N  P   T+G+I+DAHDG I +F +   +Y +  +YG                GF   +   VY S D+   +W   G A    E PAG  +RP  +FN  + +YVLW+N+ YP      F VA S  PEG F    + V +AH  L  GDF LFVD+D T Y+ Y+      ++V++LT D+L  T++      G       EA  MFKR  +YY+LT   CCFC QG+G RVY   +PLG +T
Sbjct:    5 LPLLLCLSLCTCAPAPENSP--GKSVTLSNLEPRRTTDGKIVDAHDGRIIQFGEF--FYWYGTQYGTTN-------------GFTKANEYHVYRSPDMV--NWEHIGAAL--AEAPAGVYYRPHVIFNEASGKYVLWYNW-YPELWDGHFGVAVSDTPEGPFRIVSSDVAVAHSELGVGDFGLFVDEDRTAYISYNTINGHRVSVEKLTPDYLGSTKE-----NGGYIAQYCEAGSMFKRNDIYYLLTDYTCCFCNQGAGARVYMTDNPLGQWT 251          
BLAST of NO12G00950 vs. NCBI_GenBank
Match: WP_106145140.1 (hypothetical protein [Muricauda pacifica] >PRX53802.1 glycosyl hydrolase family 43 [Muricauda pacifica])

HSP 1 Score: 147.5 bits (371), Expect = 8.500e-32
Identity = 87/249 (34.94%), Postives = 130/249 (52.21%), Query Frame = 0
Query:   27 VLYDNTRPMLDTEGRILDAHDGTIQRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLSSGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGTYAGFAVATSSKPEGHFE--QRRTVVPIAHLPAGDFHLFVDDDGTGYVLYSA--DFWITVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCCFCYQGSGIRVYTASSPLGPYT 272
            +  DN  P LD + +I+DAHDG + +F D   +Y  A E               +  GF   ++   Y+S DL   +W ++G      ++P G  +RP  ++N +T +Y+LW+N+ YP      F VA S  P+G F+       +  + +  GDF LFVDDD TGY+ Y+   +  ++V++L+ D+LS T +      G       EA  MFK+ G YY+LT   CCFC  GSG RVY + +PL  YT
Sbjct:   25 ITVDNALPRLDEKNQIVDAHDGRVIQFGDTFYWYGTAYE---------------NTNGFTPQNHYRCYSSKDLM--NWKYEGKLLE--DQPEGVYYRPHVIYNRSTKKYLLWYNW-YPKLWEGQFGVAISDTPQGPFKIVNENVQMHNSEIGLGDFGLFVDDDETGYISYNTIKNHQVSVEKLSDDYLSSTFE-----NGGTISKHMEAGTMFKKDGYYYLLTDYTCCFCNYGSGARVYISKNPLKGYT 248          
BLAST of NO12G00950 vs. NCBI_GenBank
Match: WP_068215017.1 (hypothetical protein [Lewinella sp. 4G2] >OAV43760.1 hypothetical protein A3850_004275 [Lewinella sp. 4G2])

HSP 1 Score: 144.8 bits (364), Expect = 5.500e-31
Identity = 89/245 (36.33%), Postives = 121/245 (49.39%), Query Frame = 0
Query:   31 NTRPMLDTEGRILDAHDGTIQRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLSSGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGTYAGFAVATSSKPEGHFEQRRTVVPIAH--LPAGDFHLFVDDDGTGYVLYSA--DFWITVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCCFCYQGSGIRVYTASSPLGPYT 272
            N  P L  +G+I+DAHDG I  F  +G YY +  +YG                GF   +   VY S D+   +W   G A    + P G  +RP  ++N  + +YVLW+N+ YP      F VA S  P G F      V + H  L  GDF LFVD D T Y+ Y+      ++V++L+ D+L  T +      G       EA  MFKR G+YY+LT   CCFC QG+G RVY +  PL  +T
Sbjct:   40 NVEPRLTKDGQIVDAHDGRIIEF--EGAYYWYGTQYGKTN-------------GFTTANEYHVYRSDDMV--TWEHLGPAL--ADHPEGVHYRPHVIYNAASKQYVLWYNW-YPTLWEGHFGVAVSDSPGGPFTLVNDDVKVTHSDLGVGDFGLFVDADQTAYISYNTIDGHRVSVEKLSADYLGSTLE-----NGGYIAQYCEAGSMFKRNGIYYLLTDYTCCFCNQGAGARVYMSDDPLSEWT 259          
BLAST of NO12G00950 vs. NCBI_GenBank
Match: WP_069893785.1 (hypothetical protein [Candidatus Marispirochaeta associata])

HSP 1 Score: 139.8 bits (351), Expect = 1.800e-29
Identity = 110/341 (32.26%), Postives = 143/341 (41.94%), Query Frame = 0
Query:   31 NTRPMLDTEGRILDAHDGTIQRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLSSGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWW----NYVYPNGTYAGFAVATSSKPEGHFEQRRTVVPIAHLPAGDFHLFVDDDGTGYVLYSA-DF----------WITVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCCFCYQGSGIRVYTASSPLGPYTFQGQDIACQTXXXXXXXXXXXXXXXSPATAVADGPVSTPNQGCLFYSSDQASATRAQQNFVVEVRTAAGETEYLWTGDRWMQVRR 357
            N  P  D +G ILDAH G      ++  YY + V Y              D  GF    +   Y+S D+   +W F G        P G  FRP  +F+P   +YVLW+     Y +         VA S  P G F+   T + ++   +GD  LF+DDDGT Y++YSA DF           ITV+ L  D+LS T    +  R +      EAP MFKR GLYY L         +GSG RVYTA  P+GPYT++G                           V   P  TP               +AQQN V  + T  G  EY+W GDRW    +
Sbjct:    9 NKIPRKDIDGNILDAHGGAHFNVFEN-RYYNYGVHY-------------MDTDGFSPTQHYVAYSSPDME--NWTFHGPILE-EGAPEGLYFRPHVIFSPKIGKYVLWYLWYKEYRHAAANICHKGVAVSDTPIGPFKILDTNIELSGGLSGDHDLFLDDDGTAYLIYSAHDFSRKEGKHKEAVITVERLKDDYLSST---LEASRIDAEGIPCEAPAMFKRNGLYYFLFDRWTDRGPRGSGARVYTAEHPMGPYTYRGN--------------------------VNRHPGGTP-------------IIKAQQNTVAPIETPDG-IEYIWVGDRWKSAEK 289          
BLAST of NO12G00950 vs. NCBI_GenBank
Match: OJY81057.1 (hypothetical protein BGP14_07475 [Sphingobacteriales bacterium 44-15])

HSP 1 Score: 139.4 bits (350), Expect = 2.300e-29
Identity = 88/266 (33.08%), Postives = 136/266 (51.13%), Query Frame = 0
Query:   10 LLTVVGVLPLRPCSA-KLVLYDNTRPMLDTEGRILDAHDGTIQRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLSSGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGTYAGFAVATSSKPEGHFEQRRTVVPIAH--LPAGDFHLFVDDDGTGYVLYSA--DFWITVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCCFCYQGSGIRVYTASSPLGPY 271
            L+T++ +  + P  A K ++ +N  P +DTEG I+DAHDG I ++     +Y +   YG             +  G+   +    Y+S DL+  +W  +G      + P+G  +RP  ++N  T +YVLW+N+ YP      + VA + +P G F    T V + +     GDF LF+DDD   Y+ Y+       ++++L+ D+L  T +      G     G EA  MFKR G YY+LT   CCFC QG+G+RVY + SP   Y
Sbjct:    5 LITILFISLVIPVLAQKEIVINNIIPRVDTEGNIIDAHDGRIVKY--GNRFYWYGTAYG-------------NTSGYLRSNYFQCYSSPDLT--TWKKEGKLL--IDFPSGVYYRPHVIYNAVTRQYVLWYNW-YPKLWEGRYGVAVADRPTGPFRIVNTDVKMKNSAYGVGDFGLFIDDDKAAYIAYNTIDGHKGSIEKLSADYLQSTLE-----NGGFITEGCEAGAMFKRNGKYYLLTDYTCCFCTQGTGVRVYVSDSPTRGY 245          
BLAST of NO12G00950 vs. NCBI_GenBank
Match: WP_107215896.1 (hypothetical protein [Pedobacter sp. YL28-9] >PST83634.1 hypothetical protein C7T94_13945 [Pedobacter sp. YL28-9])

HSP 1 Score: 138.7 bits (348), Expect = 3.900e-29
Identity = 100/254 (39.37%), Postives = 127/254 (50.00%), Query Frame = 0
Query:   37 DTEGRILDAHDGTIQRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLSSGSWAFQGYAFH-----WTERPAGT---LFRPSAVFNPNTCEYVLWWNYVYPNGTYAGFAVATSSKPEGHF----EQRRTV---VPIAHLPAGDFHLFVDDDGTGYVLYS---ADFWITVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYI-LTGPMCCFCYQGSGIRVYTASSPLGPYT 272
            D  G  +DAHDG I  F  DG YY++   YG        G      CGF+      VY+S D+   +W  +G+ F      W  R  G     FRP  V+N  T  YVLW N VY N    GF V TSS P G F    E R  V    P+A L  GD   FVD+DGTGY+ Y+       I ++ELT D+LS T K        ++    EAP +FKR+GLYY+  + P C +C  G+G    TA SPLGP++
Sbjct:   53 DNMGEAVDAHDGEIAFF--DGVYYLYGTSYG---CGFEWGRKDAPFCGFK------VYSSTDMV--TWTDRGFLFDATTPVWQSRCNGNTYGCFRPHVVYNKKTGLYVLWIN-VYDN--QVGFRVFTSSSPTGPFKEVAEPRLAVNSEAPVAGLNNGDHDTFVDEDGTGYIAYTDWRTKGTIVIEELTGDYLSGTGKHVKSVTAGKT----EAPALFKRKGLYYVTYSDPNCGYC-SGTGTSYKTAKSPLGPWS 285          
The following BLAST results are available for this feature:
BLAST of NO12G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25924.11.300e-16278.40glycosyl family 43 [Nannochloropsis gaditana][more]
XP_005853946.15.100e-16278.11glycosyl family 43 [Nannochloropsis gaditana CCMP5... [more]
XP_023329794.17.900e-3831.40uncharacterized protein LOC111702366 isoform X1 [E... [more]
XP_023329796.12.000e-3331.00uncharacterized protein LOC111702366 isoform X2 [E... [more]
WP_020566822.17.700e-3337.23hypothetical protein [Lewinella persica][more]
WP_106145140.18.500e-3234.94hypothetical protein [Muricauda pacifica] >PRX5380... [more]
WP_068215017.15.500e-3136.33hypothetical protein [Lewinella sp. 4G2] >OAV43760... [more]
WP_069893785.11.800e-2932.26hypothetical protein [Candidatus Marispirochaeta a... [more]
OJY81057.12.300e-2933.08hypothetical protein BGP14_07475 [Sphingobacterial... [more]
WP_107215896.13.900e-2939.37hypothetical protein [Pedobacter sp. YL28-9] >PST8... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR003ncniR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010010NSK010010Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00950.1NO12G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G00950.2NO12G00950.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613856gene_10883Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100134g13gene4597Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00950.1NO12G00950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G00950.2NO12G00950.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00950 ID=NO12G00950|Name=NO12G00950|organism=Nannochloropsis oceanica|type=gene|length=3953bp
ATAAAATTGATACCTCGCTTTTCGATCTCCTAGTCGACCTTCCTTCCCAT
CGCGCTTATCCTGCTGTGGATCGTTTTGATGCAAAAATCATGCTCAATTC
GCTTCTGCATGCTATGCCACTACGGCGTCCTCAAACCTAGTAATCTCACG
CTCATTTATCAGTGTATTCATCTATGTGACACCTACAACCTCCTGGTTCC
TGCTCGTTGAAGAAAAATATTATAAAAATAGCAGCATTTTATCAATTCGA
TCAATTCACCACACGCCACATTACTGCACAGCCATGTTGTCCCTGTCTCT
CGTCTGGTCGCTTCTGACGGTGGTGGGCGTCCTCCCGCTGCGGCCATGCT
CTGCGAAGCTCGTCCTGTACGACAATACTCGGCCAATGCTCGACACGGAG
GGCCGCATTCTAGATGCTCACGACGGCACCATTCAGCGCTTCCACGATGA
CGGGCCATACTACATGCACGCGGTAGAGTACGGACTTTGTCAGgtgaggg
tttcggaatggttgtgtgtgtgtgttttgggggggggggggcgcgcaggt
cgggcaccgcacgaagcaaaggaaatgcctgtgggaaagtcgaggtcttt
cgtcgcacccttcccaatctgatcatcgacccacacacaaacgctatcct
acgtagGCACCGAATGTGACTGGTTGTGACTCGCCTGATCGCTGCGGCTT
CCGGCTGGACCACAATGTCAGTGTTTACGCCAGCTGGGACCTGAGCAGCG
GGTCCTGGGCTTTTCAAGGGTACGCTTTCCATTGGACGGAGCGCCCGGCC
GGCACACTTTTCAGGCCCTCCGCCGTCTTTAATCCCAACACGTGCGAGTA
TGTGCTGTGGTGGAATTATGTGTACCCCAATGGGACGTATGCAGGCTTCG
CTGTAGCTACGTCCTCAAAGCCTGAGGGACACTTTGAGCAACGCCGCACA
GTGGTGCCAATCGCCCATTTACCCGCCGGGGATTTCCATTTGTTTGTCGA
CGATGACGGCACGGGTTATGTATTGTATTCAGCAGACTTTTGGATCACAG
TCCAAGAGCTGACACGTGATTTCTTGTCGGTCACGGAGAAGATATTCGAT
GGCTTTCGGGGGAATCAGTCAGAATGGGGCTGGGAGGCTCCGGTCATGTT
CAAAAGACAGGGATTGTATTACATCTTGACTGGCCCCATGTGTTGCTTTT
GTTATCAAGGGTCGGGTATTCGTGTGTATACCGCGTCGTCGCCTCTAGGG
CCGTATACATTCCAAGGCCAGGACATTGCCTGTCAGACTACAAGAAGCAG
TAGCAGTAGCAGTAGCAGTAGCAGCCTAATCCTCTCCCCCGCTACTGCTG
TTGCCGACGGTCCCGTCTCAACACCAAATCAGGGCTGCCTCTTCTATAGT
TCAGATCAAGCATCCGCAACGCGAGCCCAGCAGAATTTTGTGGTGGAAGT
CCGAACAGCAGCAGGGGAGACTGAGTACCTATGGACGGGTGATCGTTGGA
TGCAGgtacgccgccccctccttccctcctccctcactttcacacttcgc
tcaccttttcttttcctacctcctttacacacagTCCCCAGATGGTTTGA
AGGGCCATGAGCCGCAGTATTGGTTCCCCTTGACCTTTGATAATGAGGGG
GTGATTGGGAGGGTGACATGGGTGGATTTATTTGTATTAGACTTGGCGGA
TCCGGTGGAGGAGGAGGCGCGGGACTTGTCTGTGAGTGTGAGTCGGAGAT
AAAAGGAAAGAGAAAGGGAGAAAAAGGACGGGGGTAGAACAGAGATCATG
GAAGAGGAAATGTTGGAGAAGAAGTGACGAAAAAAGAAAAGAGTGTACAT
ATCATGTAATGTTTGATAAATTAACACGAAAAGCAACCAAACTAAAAATC
CGGCAGCATCATTAGAAGCATCACAAGCAGTAGCCAAGCCAACCTTTCGG
AACATCTCCTCATTTGTTAGTGAGAACATGGTGACGTCCCTTTTCACTTC
CAATTTGTTGATTTCTATTCCCTTTCTAAGGCCCCTCCCAGCACAACGGC
GCCGAACTATAACCAGGCGCCGCCGCTCTCCTCCTTTCTATCTCTTCCTG
ACTCCTCTCGAACTCATCGGGTGTCACCGGCTTCTCATAACTCCCTCTTT
CCCTCTGTGCTCCCTTCCACGCCCTGAACCCCTCCTTCAAATGCTCCTTG
AACCTCGCCACATCCACATTAATAAGCGCCGAGGTCCCAAACACGTGTAT
CTGACAAGGAATGGAGCGACACACACATCCGGGTACCATTGGTCCCGTCA
AGAGCTCCTGTCCCTCCGCCGTCTCTATTTGAAAAGGCATATGTCCCAAT
TCGATGACCGGCTCGAGGGCCTTTCGAATCCAATGTATGATGCTACTATG
GTAGGAAATAAGGAAACCATGTGGGTAGATATCGATGATTAACGCGCGAG
GCGGAAGCCAAAGGAGATTTGCCATAGCTCCGCCATGGACGAGGATGAAA
ATATCAGTGTTGTGCGCGAGCAAGACCTGATCTTTGATGCCGAGATCTGA
CATGTCCACAACGTGGGGGGAAACACCCATTACGCTCTCAATCGTGCTCC
GTACTTCTTCTAAATTTCGGATGCGCCGAGTGGTAGAGCGTCGGATGAGC
GTGACTCTTGGTGGACCTACTCGCCGAGGAGGAGTAGGGGTAAAAACAGC
AGGAGCAGCAGCAGGAGCAGGAGCAGCAGCAGCAGCAGCAGGAGCAGAAG
CAGGAGCAGCAGTGTCGTCTCCTTCTTCAACGATGCCGTACCGATGAAAG
ACGACTTTTCTTAGAGCCGCGGCAGCTTCGGGTGGGTCGAAAATACCACG
GGTGCGGTTCGTGACTTTGCAGTGGTTCCAATGAACGCAATTCGTTCTTG
TACCAACCACAAGGGTCTTGACGTGGTAGGACACATTATTCGACAAGGGC
AGCACGGTCACCTCTGGGTAAAACTCTTTCCAAAAAATCCTGTCCATGAG
CGTGCCAGCGTGATGGTCGGTGAGGAAGATACCCACGTCTTGCTGCTTAA
GCGTGTGGAGAATGGCGGGAACTGGGTCATTGCTGGTGATGTGGCTTGCA
TTGTAAATCATGGCCATGGCAGGTATCATGTCTTCAAACAGCAAATGGTA
GGCATTGCCCGGGTTTAGGCGATGCAAGGCGAGGCCTAGATTAAAATTCT
CTGTCTTGTTTGTTTGGGCGAGGATGGTGGCAATGGCTGTGGGGTCGGAG
ATGACGCGGACATCGCAGGGGGCCGCATATATCTCAGGCATATTGACCAT
TGAGCAGAGCATAGGAGGCACCGTCGCGACAAGCGGGTCCTCTGCGTAGT
AGTAGATTACGCCTCTTTGCACGACGACATTCTGGAAAATACACCGCCGT
GTGTCCAAAGAGTATCCCTGGCAAGCAAAGGTGGATGGATTGGAACGACT
CATGGCCAATAATGGTGGCTTACGTGTAAATCGCAGCGAATACCACACAA
TCAGCACGACCGTCACTGCCCAATAAACCCTCCCTCGGCAGCATTTCGGG
ACAAATTTTGTCATAAGAGAGGTCCAGCGTTTTGTTTGAGGAGGGGGCCA
TCCTGTCCAGTGTGTGCGTGAAGGGAAGAAGAATCTCAACCAATAATCCA
TTGCGATGTGGATGTTGCGTCTCCTGTGACACGCAAGTACTCACCTGGCA
CGACCTCCACGAGCTCGTCTTGATCCATCCTGTCAAGACGGTACAACGGT
GGTAGAGTCGAGGACGAGAACGGTGAGCACATGGTCAACATGCAAAGTGA
TCAAGCAGAGCATGACATGATCTTAGTGAACCAGGTCATCTTCTGTTACT
TTGGCTACCTACGGTACGAGTGAGGAGAGAGAGAGAGAGAGGGAGCAAAA
ACTCCATCAAATTGATCATATAATCCCTGTTCGGTGGCTTCGGAAATGAC
GAA
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protein sequence of NO12G00950.1

>NO12G00950.1-protein ID=NO12G00950.1-protein|Name=NO12G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MLSLSLVWSLLTVVGVLPLRPCSAKLVLYDNTRPMLDTEGRILDAHDGTI
QRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLS
SGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGTYAG
FAVATSSKPEGHFEQRRTVVPIAHLPAGDFHLFVDDDGTGYVLYSADFWI
TVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCC
FCYQGSGIRVYTASSPLGPYTFQGQDIACQTTRSSSSSSSSSSLILSPAT
AVADGPVSTPNQGCLFYSSDQASATRAQQNFVVEVRTAAGETEYLWTGDR
WMQSPDGLKGHEPQYWFPLTFDNEGVIGRVTWVDLFVLDLADPVEEEARD
LSVSVSRR*
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protein sequence of NO12G00950.2

>NO12G00950.2-protein ID=NO12G00950.2-protein|Name=NO12G00950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MLSLSLVWSLLTVVGVLPLRPCSAKLVLYDNTRPMLDTEGRILDAHDGTI
QRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLS
SGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGTYAG
FAVATSSKPEGHFEQRRTVVPIAHLPAGDFHLFVDDDGTGYVLYSADFWI
TVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCC
FCYQGSGIRVYTASSPLGPYTFQGQDIACQTTRSSSSSSSSSSLILSPAT
AVADGPVSTPNQGCLFYSSDQASATRAQQNFVVEVRTAAGETEYLWTGDR
WMQVRRPLLPSSLTFTLRSPFLFLPPLHTVPRWFEGP*
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Synonyms
Publications