NO12G00900, NO12G00900 (gene) Nannochloropsis oceanica

Overview
NameNO12G00900
Unique NameNO12G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1133
Alignment locationchr12:294458..295590 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:294458..295590 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR033579TMEM128
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO12G00900 vs. NCBI_GenBank
Match: XP_005854273.1 (hypothetical protein NGA_0182520, partial [Nannochloropsis gaditana CCMP526] >EKU22091.1 hypothetical protein NGA_0182520, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 227.3 bits (578), Expect = 4.300e-56
Identity = 128/189 (67.72%), Postives = 148/189 (78.31%), Query Frame = 0
Query:    1 MSRSVEATRRRLNEERMSNDMETQPGQIFTSSSSSQPGQEPPPGHQT---LEIELDSPLKRNFKALLVLAVSVYGLREAKLLENLLWNKRVGSTALAVAVAASSVFVLLWAYLDVYVGTVQGQKVGYPEARRVTHTLLLSLLLTLVSLTVAIWPVYQAAALVYVCMVSYGVMFQVVILLPASVYNPLFF 187
            MS  VEA RRR  E+R               ++S Q  Q P  G  T   L+ ELDSPL+RNFKALLVLAVSVYGL+EAK +ENLLWNK+VG  ALAV+VAASS+FVLLWAYLDVYVG V G++V YPEARRVTH LL+SLL+TLVSLT+A+WP+YQA ALV VCM+SYGV+FQVVIL+PASVYNPLFF
Sbjct:   26 MSAGVEAARRRSREDR---------------TTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAASSIFVLLWAYLDVYVGAVLGKQVDYPEARRVTHALLVSLLVTLVSLTIAVWPIYQATALVLVCMLSYGVLFQVVILVPASVYNPLFF 199          
BLAST of NO12G00900 vs. NCBI_GenBank
Match: XP_005854170.1 (hypothetical protein NGA_0182510 [Nannochloropsis gaditana CCMP526] >EKU22193.1 hypothetical protein NGA_0182510 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 227.3 bits (578), Expect = 4.300e-56
Identity = 128/189 (67.72%), Postives = 148/189 (78.31%), Query Frame = 0
Query:    1 MSRSVEATRRRLNEERMSNDMETQPGQIFTSSSSSQPGQEPPPGHQT---LEIELDSPLKRNFKALLVLAVSVYGLREAKLLENLLWNKRVGSTALAVAVAASSVFVLLWAYLDVYVGTVQGQKVGYPEARRVTHTLLLSLLLTLVSLTVAIWPVYQAAALVYVCMVSYGVMFQVVILLPASVYNPLFF 187
            MS  VEA RRR  E+R               ++S Q  Q P  G  T   L+ ELDSPL+RNFKALLVLAVSVYGL+EAK +ENLLWNK+VG  ALAV+VAASS+FVLLWAYLDVYVG V G++V YPEARRVTH LL+SLL+TLVSLT+A+WP+YQA ALV VCM+SYGV+FQVVIL+PASVYNPLFF
Sbjct:   26 MSAGVEAARRRSREDR---------------TTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAASSIFVLLWAYLDVYVGAVLGKQVDYPEARRVTHALLVSLLVTLVSLTIAVWPIYQATALVLVCMLSYGVLFQVVILVPASVYNPLFF 199          
BLAST of NO12G00900 vs. NCBI_GenBank
Match: EWM25930.1 (hypothetical protein Naga_100134g6 [Nannochloropsis gaditana])

HSP 1 Score: 91.7 bits (226), Expect = 2.800e-15
Identity = 58/102 (56.86%), Postives = 67/102 (65.69%), Query Frame = 0
Query:    1 MSRSVEATRRRLNEERMSNDMETQPGQIFTSSSSSQPGQEPPPGHQT---LEIELDSPLKRNFKALLVLAVSVYGLREAKLLENLLWNKRVGSTALAVAVAA 100
            MS  VEA RRR  E+R               ++S Q  Q P  G  T   L+ ELDSPL+RNFKALLVLAVSVYGL+EAK +ENLLWNK+VG  ALAV+VAA
Sbjct:   26 MSAGVEAARRRSREDR---------------TTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAA 112          
BLAST of NO12G00900 vs. NCBI_GenBank
Match: OWZ00479.1 (putative membrane protein [Phytophthora megakarya])

HSP 1 Score: 66.6 bits (161), Expect = 9.800e-8
Identity = 40/136 (29.41%), Postives = 75/136 (55.15%), Query Frame = 0
Query:   62 ALLVLAVSVYGLREAKLLENLLWNKRVGSTALAVAVAASSVFVLLWAYLDVYVGTVQGQKVGYPEARRVTHTLLLSLLLTLVSLTVAIWPVYQAAALVYVCMVSYGVMFQVVILLPASVYNPLFFCAYAGFVYMWI 198
            A+  L V+ +GL EA  + +LL       T + + +   ++  L   Y++VY   + G++V Y  A+  TH +L+S+L +   L V +WPV+    L Y+ M S+GV+ Q++++LP  +   +F   Y  F++ ++
Sbjct:   54 AVAFLTVASFGLYEAHFVSDLLHAPHANRTFVHLGIFFGTLLGLFGCYIEVYRSMILGEQVHYESAKTATHGMLVSMLASGFCLAVGMWPVWHWLTLPYLIMWSWGVVLQLLVILPPILQRVVFVGGYLWFMHSYL 189          
BLAST of NO12G00900 vs. NCBI_GenBank
Match: XP_009528910.1 (hypothetical protein PHYSODRAFT_510137 [Phytophthora sojae] >EGZ15161.1 hypothetical protein PHYSODRAFT_510137 [Phytophthora sojae])

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-7
Identity = 58/205 (28.29%), Postives = 101/205 (49.27%), Query Frame = 0
Query:    1 MSRSVEATRRRLNEERMSN--------DMETQPGQIFTSSSSSQPGQEPPPGHQTLEIELDSPLKRNFKALLVLAVSVYGLREAKLLENLLWNKRVGSTALAVAVAASSVFVLLWAYLDVYVGTVQGQKVGYPEARRVTHTLLLSLLLTLVSLTVAIWPVYQAAALVYVCMVSYGVMFQVVILLPASVYNPLFFCAYAGFVYMWI 198
            M+   E T RR +  R+ +        D ET P      +SS++  Q+       ++  LD        +L  L V+  GL EA+ +  LL         + + V  +S+  L  AY++VY G + G++V Y  A+  TH +L S+L +   L V +WPV++   L Y+ M S+GV+ Q++++LP  +   +F   Y  F++ ++
Sbjct:    2 MTMEQEVTPRRPHSARVGDSDDADELMDKETDPMVSAAPNSSARRAQQ---AESWVQFVLD-----RIWSLAFLGVASLGLYEAEFVPELLQAPHARREFVHLGVLFASLLGLFGAYIEVYRGMILGERVHYATAKTATHGMLASMLASGFCLAVGMWPVWRWLTLPYLFMWSWGVVVQLLVILPPLLQRVVFVGGYLWFMHAYL 198          
BLAST of NO12G00900 vs. NCBI_GenBank
Match: GAY06770.1 (Hypothetical protein PINS_014574 [Pythium insidiosum])

HSP 1 Score: 65.9 bits (159), Expect = 1.700e-7
Identity = 36/138 (26.09%), Postives = 77/138 (55.80%), Query Frame = 0
Query:   60 FKALLVLAVSVYGLREAKLLENLLWNKRVGSTALAVAVAASSVFVLLWAYLDVYVGTVQGQKVGYPEARRVTHTLLLSLLLTLVSLTVAIWPVYQAAALVYVCMVSYGVMFQVVILLPASVYNPLFFCAYAGFVYMWI 198
            F   +   V+  GL EA+ ++ +L+ +      + + +  +S+ +L  +Y+++Y     G+KV Y +A+  TH +L+S++L  V   + +WPV+    + Y+ M  +GV+ Q+V++ P  +   +F  AY  F++ ++
Sbjct:   64 FWPTVFFTVAAVGLYEARFVQRVLYAEHANRLFVNLFILCASMVMLFGSYIELYRNFFLGEKVTYEKAKTSTHGMLVSMMLAGVCFCIGMWPVWHWLTIPYLFMWFWGVIVQIVVIFPVQLQRVIFMGAYLWFMHSYL 201          
BLAST of NO12G00900 vs. NCBI_GenBank
Match: GAX93278.1 (Hypothetical protein PINS_001169 [Pythium insidiosum])

HSP 1 Score: 65.9 bits (159), Expect = 1.700e-7
Identity = 36/138 (26.09%), Postives = 77/138 (55.80%), Query Frame = 0
Query:   60 FKALLVLAVSVYGLREAKLLENLLWNKRVGSTALAVAVAASSVFVLLWAYLDVYVGTVQGQKVGYPEARRVTHTLLLSLLLTLVSLTVAIWPVYQAAALVYVCMVSYGVMFQVVILLPASVYNPLFFCAYAGFVYMWI 198
            F   +   V+  GL EA+ ++ +L+ +      + + +  +S+ +L  +Y+++Y     G+KV Y +A+  TH +L+S++L  V   + +WPV+    + Y+ M  +GV+ Q+V++ P  +   +F  AY  F++ ++
Sbjct:   64 FWPTVFFTVAAVGLYEARFVQRVLYAEHANRLFVNLFILCASMVMLFGSYIELYRNFFLGEKVTYEKAKTSTHGMLVSMMLAGVCFCIGMWPVWHWLTIPYLFMWFWGVIVQIVVIFPVQLQRVIFMGAYLWFMHSYL 201          
BLAST of NO12G00900 vs. NCBI_GenBank
Match: POM71665.1 (Hypothetical protein PHPALM_11735 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.1 bits (157), Expect = 2.800e-7
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = 0
Query:   66 LAVSVYGLREAKLLENLLWNKRVGSTALAVAVAASSVFVLLWAYLDVYVGTVQGQKVGYPEARRVTHTLLLSLLLTLVSLTVAIWPVYQAAALVYVCMVSYGVMFQVVILLPASVYNPLFFCAYAGFVYMWI 198
            L V+  GL EA  + +LL       + + + +   S+  L   Y++VY   + G+ V Y  A+  TH +LLS+L +   L + +WPV+    L Y+ M S+GV+ Q++++LP  +   +F  AY  F++ ++
Sbjct:   59 LTVASLGLYEASFVSDLLHAPHANRSFVHLGIFFGSLLGLFGCYIEVYRSMILGEHVHYESAKTATHGMLLSMLASGFCLAIGMWPVWHWLTLPYLFMWSWGVVVQLLVILPPLLQRLVFVGAYIWFMHAYL 190          
BLAST of NO12G00900 vs. NCBI_GenBank
Match: POM77911.1 (Hypothetical protein PHPALM_4632 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 64.7 bits (156), Expect = 3.700e-7
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = 0
Query:   66 LAVSVYGLREAKLLENLLWNKRVGSTALAVAVAASSVFVLLWAYLDVYVGTVQGQKVGYPEARRVTHTLLLSLLLTLVSLTVAIWPVYQAAALVYVCMVSYGVMFQVVILLPASVYNPLFFCAYAGFVYMWI 198
            L V+  GL EA  + +LL       + + + +   S+  L   Y++VY   + G+ V Y  A+  TH +LLS+L +   L + +WPV+    L Y+ M S+GV+ Q++++LP  +   +F  AY  F++ ++
Sbjct:   59 LTVASLGLYEASFVSDLLHAPHANRSFVHLGIFFGSLLGLFGCYIEVYRSMILGEVVHYESAKTATHGMLLSMLASGFCLAIGMWPVWHWLTLPYLFMWSWGVVVQLLVILPPLLQRLVFVGAYIWFMHAYL 190          
The following BLAST results are available for this feature:
BLAST of NO12G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 9
Match NameE-valueIdentityDescription
XP_005854273.14.300e-5667.72hypothetical protein NGA_0182520, partial [Nannoch... [more]
XP_005854170.14.300e-5667.72hypothetical protein NGA_0182510 [Nannochloropsis ... [more]
EWM25930.12.800e-1556.86hypothetical protein Naga_100134g6 [Nannochloropsi... [more]
OWZ00479.19.800e-829.41putative membrane protein [Phytophthora megakarya][more]
XP_009528910.11.300e-728.29hypothetical protein PHYSODRAFT_510137 [Phytophtho... [more]
GAY06770.11.700e-726.09Hypothetical protein PINS_014574 [Pythium insidios... [more]
GAX93278.11.700e-726.09Hypothetical protein PINS_001169 [Pythium insidios... [more]
POM71665.12.800e-730.30Hypothetical protein PHPALM_11735 [Phytophthora pa... [more]
POM77911.13.700e-730.30Hypothetical protein PHPALM_4632 [Phytophthora pal... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR003ncniR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010000NSK010000Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00900.1NO12G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100134g6gene4590Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00900.1NO12G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00900 ID=NO12G00900|Name=NO12G00900|organism=Nannochloropsis oceanica|type=gene|length=1133bp
AAACATACACAGTACCACATACAGTATCCTGCACTCAATCATTATGTCAC
GCAGCGTCGAGGCAACACGTCGGCGGCTGAACGAAGAGCGCATGAGCAAT
GACATGGAGACCCAACCAGGGCAAATTTTCACCTCCTCCTCTTCATCACA
GCCAGGGCAAGAACCACCACCAGGGCACCAGACATTAGAAATAGAGTTGG
ACAGCCCCCTGAAGCGGAATTTTAAAGCGCTCCTGGTTTTGGCTGTGTCG
GTTTATGGTTTAAGAGAGGCCAAGTTGCTCGAAAATTTGCTGTGGAATAA
ACGAGTTGGAAGCACGGCGTTGGCGGTGGCCGTTGCGGCAAGgtgagtag
gaggaggaggaggaggaggaggaggaaataggacgagtgtaggaagaatg
aggaagatgtcgatggtaaagtgcgcttctaccatttgctgtcacatctt
tgacgccctgttccacttgatgtgatatacttctgataagaccttacccc
tcattttctcccctctcttccttttcgtcccctcactgaatctccccact
agCTCTGTCTTCGTCCTCCTTTGGGCCTACCTTGACGTTTACGTCGGCAC
CGTGCAGGGGCAAAAAGTCGGGTACCCGGAAGCCCGTCGTGTCACCCACA
CCCTCCTCCTCTCCCTCCTTCTCACCCTCGTCTCCCTGACTGTGGCCATT
TGGCCGGTCTATCAGGCGGCTGCTCTAGTGTACGTATGTATGGTCAGTTA
TGGCGTCATGTTTCAGGTGGTGATTCTCTTGCCCGCTTCGGTGTACAACC
CACTCTTCTTTTGTGCGTATGCTGGCTTTGTGTACATGTGGATTCGCTGA
AAACGATTAGGAAGGGAGGGAGGCAGGGAGAGAAAAAGAATTTGTGAAAT
TCAGTCGAGTCGTAGATCGAAGCACTAGAGGAAAACTTAATCGAATTTTT
CGAGCACATTATAAACTGGAGGACTGGAGGTAATGGTGAAGTCTAGAGTA
TAGACGTAATGCGGCAGTGGTGATACTGCTACTCCTGCTGCCACCACTGC
TGCTGGCATTTCGGATGATTTATTTTTAATGTTTGGGGGAAATGTAAACA
TATCATCTGCCTGCAGCCTCTGCCTAATTATAT
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protein sequence of NO12G00900.1

>NO12G00900.1-protein ID=NO12G00900.1-protein|Name=NO12G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MSRSVEATRRRLNEERMSNDMETQPGQIFTSSSSSQPGQEPPPGHQTLEI
ELDSPLKRNFKALLVLAVSVYGLREAKLLENLLWNKRVGSTALAVAVAAS
SVFVLLWAYLDVYVGTVQGQKVGYPEARRVTHTLLLSLLLTLVSLTVAIW
PVYQAAALVYVCMVSYGVMFQVVILLPASVYNPLFFCAYAGFVYMWIR*
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Synonyms
Publications