NO12G00870, NO12G00870 (gene) Nannochloropsis oceanica

Overview
NameNO12G00870
Unique NameNO12G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2649
Alignment locationchr12:286644..289292 +

Link to JBrowse

Properties
Property NameValue
DescriptionGcn5-related n-acetyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:286644..289292 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016181Acyl_CoA_acyltransferase
IPR000182GNAT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO12G00870 vs. NCBI_GenBank
Match: XP_005854169.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526] >XP_005854272.1 gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526] >EKU22090.1 gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526] >EKU22192.1 gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 214.9 bits (546), Expect = 5.100e-52
Identity = 138/357 (38.66%), Postives = 181/357 (50.70%), Query Frame = 0
Query:   48 TSTKTASTTRPIATEYIDNHTPALPAISPTTVAPHPRRSPPFPPLDLASPHVRLEIRPATIDELSLIVDARLQVFGRQKKCLPLSHS--PHFSSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVQSIQNLLARRAKGAIVFVATARDMRRPEAPPVLVGSVEASTHEFAEVGFSPCLSEARVREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-------------------------------PPLQREKGSKLYITGMMVSEAFRRQGVAASLLRAVDTHAYKNNLNYICLYVEGGNESALRLYEKNGYSVVAFSPQAESFAAAIGLYKGPFSSRRYSFAYKRL 372
            + T  A   RP +    D+H   +P     T   H   SP     DL SP+VRLE+RPA + EL+L+VD R++VFG  K+      +  P+ +                              K +S+QNL+AR++KG+++FV TARD+R P+A PVLV SVEASTHEF EVGFSPCL++    E                                                                       P    K SKLY+TGMMV +AFRRQGVAA+LL AV+ +A    +NYICLYV+  N SA RLY+K+GY VV FSPQAE+FA+ IGLYKG +++R+YSFAY+RL
Sbjct:    9 SETAAAPAIRPSS----DSHKEHVPVADTLTYLSH--HSP--SSFDLRSPYVRLEVRPANLQELNLVVDMRMEVFGPGKEASTAGSASIPNHTGLSGPSEVEGRETKGRGGTAPPVPDMSAGWKAESLQNLIARQSKGSVIFVVTARDVRHPDAQPVLVASVEASTHEFHEVGFSPCLAQVEDEEEDGEGGEEGAYGWRLQGGWDRGGAGFWAGIPDARGSSVGKASCSSSQPSVLLARTSFLDTPPENKGTGIPSPAHERKQSKLYVTGMMVVDAFRRQGVAAALLTAVEEYARGRGINYICLYVDAYNSSAQRLYQKSGYLVVPFSPQAEAFASKIGLYKGAYAARQYSFAYRRL 357          
BLAST of NO12G00870 vs. NCBI_GenBank
Match: EWM25931.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 212.6 bits (540), Expect = 2.500e-51
Identity = 147/386 (38.08%), Postives = 193/386 (50.00%), Query Frame = 0
Query:   24 LLLALLLPELATALVCSPSF--SPPITS---TKTASTTRPIATEYIDNHTPALPAISPTTVAPHPRRSPPFPPLDLASPHVRLEIRPATIDELSLIVDARLQVFGRQKKCLPLSHS--PHFSSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVQSIQNLLARRAKGAIVFVATARDMRRPEAPPVLVGSVEASTHEFAEVGFSPCLSEARVREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-------------------------------PPLQREKGSKLYITGMMVSEAFRRQGVAASLLRAVDTHAYKNNLNYICLYVEGGNESALRLYEKNGYSVVAFSPQAESFAAAIGLYKGPFSSRRYSFAYKRL 372
            LL  LL+     ALV +PS    P + +   + +     P      D+H   +P     T   H   SP     DL SP+VRLE+RPA + EL+L+VD R++VFG  K+      +  P  +                              K +S+QNL+AR++KG+++FV TARD+R P+A PVLV SVEASTHEF EVGFSPCL++    E     XX                                                                P    K SKLY+TGMMV +AFRRQGVAA+LL AV+ +A    +NYICLYV+  N SA RLY+K+GY VV FSPQAE+FA+ IGLYKG +++R+YSFAY+RL
Sbjct:   21 LLPCLLVTRSVQALVTAPSLRRGPGMAAAYRSPSEIAAAPAIRPSSDSHKEHVPVADTLTYLSH--HSP--SSFDLRSPYVRLEVRPANLQELNLVVDMRMEVFGPGKEASTAGSASIPKHTGLSGPSEVEGRETKGRRGTAPPAPDMSAGWKAESLQNLIARQSKGSVIFVVTARDVRHPDAQPVLVASVEASTHEFHEVGFSPCLAQVEDEEEDGEGXXEGADGWRLQGGWDRGAAGFWAGIPGARGSSVGKASCSSSQPSVLLARTSFLDTPPENKGTGIPSPAHERKQSKLYVTGMMVVDAFRRQGVAAALLTAVEEYARGRGINYICLYVDAYNSSAQRLYQKSGYLVVPFSPQAEAFASKIGLYKGAYAARQYSFAYRRL 402          
BLAST of NO12G00870 vs. NCBI_GenBank
Match: XP_005856284.1 (gnat family, partial [Nannochloropsis gaditana CCMP526] >EKU20064.1 gnat family, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 102.4 bits (254), Expect = 3.700e-18
Identity = 81/282 (28.72%), Postives = 127/282 (45.04%), Query Frame = 0
Query:   92 LDLASPHVRLEIRPAT-IDELSLIVDARLQVFGRQKKCLPLSHSPHFSSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVQSIQNLLARRAKGAIVFVATARDMRRPEAPPVLVGSVEASTHEFAEVGFSPCLSEARVREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPPLQREKGSKLYITGMMVSEAFRRQGVAASLLRAVDTHAYKNNLNYICLYVEGGNESALRLYEKNGYSVVAFSPQAESFAAAIGLYKGPFSSRRYSFAYKRLA 373
            L L SP + + I+PA+ ++EL  +++ R +VF    +  PLS                                    +++ I+++L RRAKG+++ +ATARD+  P +  V++GS+E STHEF + G SP L ++                                                    KLY+T + V +AFR +GVA +LL+AVD  A      Y+CL+ E  N +A RLY  + Y  V  SP    FA A+GL   P +++ Y F YK+++
Sbjct:    8 LRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLE--PLS---------------------------------VKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEF-DNGASPFLRDS------------------------------------------------ADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGL---PTAAKAYGFFYKQIS 202          
BLAST of NO12G00870 vs. NCBI_GenBank
Match: EWM25101.1 (gnat family [Nannochloropsis gaditana])

HSP 1 Score: 102.4 bits (254), Expect = 3.700e-18
Identity = 81/282 (28.72%), Postives = 127/282 (45.04%), Query Frame = 0
Query:   92 LDLASPHVRLEIRPAT-IDELSLIVDARLQVFGRQKKCLPLSHSPHFSSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVQSIQNLLARRAKGAIVFVATARDMRRPEAPPVLVGSVEASTHEFAEVGFSPCLSEARVREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPPLQREKGSKLYITGMMVSEAFRRQGVAASLLRAVDTHAYKNNLNYICLYVEGGNESALRLYEKNGYSVVAFSPQAESFAAAIGLYKGPFSSRRYSFAYKRLA 373
            L L SP + + I+PA+ ++EL  +++ R +VF    +  PLS                                    +++ I+++L RRAKG+++ +ATARD+  P +  V++GS+E STHEF + G SP L ++                                                    KLY+T + V +AFR +GVA +LL+AVD  A      Y+CL+ E  N +A RLY  + Y  V  SP    FA A+GL   P +++ Y F YK+++
Sbjct:   88 LRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLE--PLS---------------------------------VKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEF-DNGASPFLRDS------------------------------------------------ADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGL---PTAAKAYGFFYKQIS 282          
The following BLAST results are available for this feature:
BLAST of NO12G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005854169.15.100e-5238.66gcn5-related n-acetyltransferase [Nannochloropsis ... [more]
EWM25931.12.500e-5138.08gcn5-related n-acetyltransferase [Nannochloropsis ... [more]
XP_005856284.13.700e-1828.72gnat family, partial [Nannochloropsis gaditana CCM... [more]
EWM25101.13.700e-1828.72gnat family [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009997NSK009997Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00870.1NO12G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533903gene_9997Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100134g2gene4587Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00870.1NO12G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00870 ID=NO12G00870|Name=NO12G00870|organism=Nannochloropsis oceanica|type=gene|length=2649bp
GTGCTCTCTCGGTTGAGACTGATATGGTCCTGGCTTGCAAAGAAGAGCCT
CGGGTAACGTGCGGTCCCTTGGTACGCTGCCTTTCGTACGAACATTTTCA
CCAATACACTCTCGTGCAATCTTTGACGTCGCACTAGCAGAGGGGTGTGG
GGCTTGCCGTGGCACGATTTTTCAATCGACCAAGGGGTTCGTCTTCAACT
CCCGCCGGCCTCATGAAACAGCCATCTGCTCGCTGTGTTGCTTCTATATG
CTGGATGCGATTGCTGTTTGCATTGGCCCCTCCCGGGCCGTGCCCCCGCA
CATGACTGAGGCGCACAGCAAACTCTAGACGACAACATGCGTTGACTACG
CAGTCAAGCTGTGCGCTTTCGGCATGATCCCTTATGTGGCAGAGTCTGCC
TTTTTCGCCCATCGTCCGATCTGTCTCATTTGTTCTGCTTCCGGTACTCC
TTTCTTCCCTCCCTCCTCCTCCTCGTAGATGCGACGACTGTGTGCGTTAG
GCCTGAAATCATGCCGGCCACTACACACGCCTATGGGCTTCCCTCTCCTC
CTCCTCGCGCTCCTTCTACCTGAGCTTGCCACCGCGTTGGTCTGTTCCCC
ATCCTTCTCCCCCCCAATCACATCAACTAAGACCGCCAGCACCACAAGAC
CTATCGCCACTGAGTACATCGACAATCATACACCTGCTCTTCCTGCTATA
AGTCCTACCACCGTAGCCCCGCATCCCAGAAGATCCCCTCCCTTTCCCCC
CTTGGACCTCGCTAGCCCCCATGTCCGCCTTGAAATCCGTCCCGCCACCA
TCGACGAGCTCTCCTTGATCGTAGACGCTCGGTTACAAGTCTTCGGGCGA
CAAAAAAAGTGCCTCCCCCTCTCTCACAGCCCCCACTTCTCCTCCTACTC
TGCCTCCTCCCCAACATGCGCCACACCAGGTGCCGATGCAGCAGCATCGG
CAGCAGCAACAGCAGCCGCGGCCGAAGAATGGAAAGTGCAATCGATCCAA
AATTTGCTGGCACGAAGAGCCAAGGGCGCGATTGTATTTGTCGCGACGGC
GAGAGATATGAGGAGGCCAGAGGCACCTCCGGTGTTGGTGGGCTCGGTGG
AAGCAAGCACACATGAGTTTGCCGAAGTTGGTTTCAGCCCCTGTCTGTCC
GAGGCAAGGGTGAGGGAGAAAGAGGAGGAAGAGGAGGATCGGGAAGATGA
CTACTATGTTCATTGTCGGCCTTCATCTTGGACCACAACTCTCACCACTA
CCACCGGTAGCAGCAGCAGCTGGGCATCGCCCTCCCCTCCCCTCCAAAGG
GAGAAAGGCAGCAAGCTCTACATTACGGGTATGATGGTTTCGGAAGCCTT
TCGCAGACAAGGAGTCGCCGCCTCTCTCCTTCGTGCCGTTGACACCCATG
CTTATAAAAATAACTTGAACTATATCTGTTTGTATGTCGAGGGCGGCAAT
GAATCGGCGCTGCGGTTGTATGAGAAGAATGGGTACAGTGTGGTTGCATT
CTCACCCCAAGCAGAAAGCTTTGCCGCGGCGATTGGGCTGTACAAAGGGC
CTTTTTCATCACGTCGATATTCATTTGCGTACAAACGGTTGGCGGTGGGG
TTTGGGACTGCTGGTGGTGCTGCTGGTGCTGGTGCTGCTGCTGTCGGTGC
TGCTGCTGCCGTTGGTGCAGGTGATAGGGAGCCCGTGTCCGGGCGTGGTA
GATTTGTTGTGGGTAGTGTTGGGGTTTTGCAGCATCAGCAGCAGCAGCAA
CAACAACAGCAGCAGCCGCAGCCCCCGCAGCTGGAGGGGGAAAGCTTATT
GTCCGAACCAAACAAGCCGTTTCCGGCGCGGTCGCCATCCTTGGTGATGC
CTTTTTGAGGGGGCAAAGTGCAGAGAAGCAGGAAAAAGAGCAGAAGAAGC
AGAAATGATCGAGAGAAGGAGTGCGGAGTCCTGATGAGGAGGAGGAGGAG
AAACGGACATGTGTATTTCTCGTATCGTTTTCCGCATACCCTATTTCCGG
TTTCTCATGAACATAATTTGTATAGGGCTGCTTTTGCCCGATGAGCCAGC
ACTATGACATGATGAGGGAATGATAACCTTCTGTCAACGGTTTGGGAGAT
AAAGTAACTGACGACAGCAAAGAGGCAAAGAGGCGAATAACTGCATGCAT
GCACGGGGCAGTGAATAAGGGACGAGCCAAGAATCATGAACTGATAAGTA
ACAACAAACACGAGAAGGATAAGAAGGATAAGAAGAGGAAGAAGACGTGT
ACCTGTAATTCGAGTAACGGACAAATAGCTGTTTGGTGCGTGAGTGTTTG
CGTAAATTGCGCGGTCACCCACCATGCGCACATGGGCATGTCGCAAGCCT
CACAAAAAGCGGAGAAACGTGAGGAGACCTGAAACACTGAATGATTTACA
TATGAGGCAAGGCAATGCATACGCACTTTTGAATTGCCTGGCTTTGGCCA
TGACACATGCTTACCCCACTGTGGAAAAAGAATCCGGAAAGGAAGGAATG
GGAAAGAAATGAAGAGAATAAGAGATGGTTTGATATGGAAAACTCAAATT
TGGGATGTATTCGCCTGCTTTTACTTAGTGGCCGTCCCTTTGATTTGTGC
TCGCAAATAATTGAAATATCGACGAAAGACGAAGAAAAAATACTTGGTT
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protein sequence of NO12G00870.1

>NO12G00870.1-protein ID=NO12G00870.1-protein|Name=NO12G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MRRLCALGLKSCRPLHTPMGFPLLLLALLLPELATALVCSPSFSPPITST
KTASTTRPIATEYIDNHTPALPAISPTTVAPHPRRSPPFPPLDLASPHVR
LEIRPATIDELSLIVDARLQVFGRQKKCLPLSHSPHFSSYSASSPTCATP
GADAAASAAATAAAAEEWKVQSIQNLLARRAKGAIVFVATARDMRRPEAP
PVLVGSVEASTHEFAEVGFSPCLSEARVREKEEEEEDREDDYYVHCRPSS
WTTTLTTTTGSSSSWASPSPPLQREKGSKLYITGMMVSEAFRRQGVAASL
LRAVDTHAYKNNLNYICLYVEGGNESALRLYEKNGYSVVAFSPQAESFAA
AIGLYKGPFSSRRYSFAYKRLAVGFGTAGGAAGAGAAAVGAAAAVGAGDR
EPVSGRGRFVVGSVGVLQHQQQQQQQQQQPQPPQLEGESLLSEPNKPFPA
RSPSLVMPF*
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Synonyms
Publications