NO12G00730, NO12G00730 (gene) Nannochloropsis oceanica

Overview
NameNO12G00730
Unique NameNO12G00730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1436
Alignment locationchr12:253977..255412 +

Link to JBrowse

Properties
Property NameValue
DescriptionNADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:253977..255412 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO:0005747mitochondrial respiratory chain complex I
Vocabulary: Biological Process
TermDefinition
GO:0022904respiratory electron transport chain
GO:0055114oxidation-reduction process
GO:0022904respiratory electron transport chain
Vocabulary: Molecular Function
TermDefinition
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0016491oxidoreductase activity
GO:0008137NADH dehydrogenase (ubiquinone) activity
Vocabulary: INTERPRO
TermDefinition
IPR006806ETC_CI_29_9
Homology
[Close]
BLAST of NO12G00730 vs. NCBI_GenBank
Match: XP_005856026.1 (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 [Nannochloropsis gaditana CCMP526] >EKU20319.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 [Nannochloropsis gaditana CCMP526] >EWM25948.1 ETC complex I subunit [Nannochloropsis gaditana])

HSP 1 Score: 135.6 bits (340), Expect = 1.600e-28
Identity = 82/153 (53.59%), Postives = 94/153 (61.44%), Query Frame = 0 
Query:   39 MSSFLVATTRQCCRR-VSMLPTTRWTSAPLSVQATTAA-----ASYHKTATGPVGLEVNPNSRDDFIKQQKTLLEKVKKFPADAEYRKVITSIATYRLGKAEAITDPVALEKELDDGQLEEMLAQGEDELMLMDDYEERKYWETEEVKAAFRD 186
            MSS L+AT R CCRR  ++ P   W       QA  AA     ASYHKTATGPVGL VNPN+R+DFIKQQK +LEK+++FP +AEYRKV+TSIA+YRL KAE I DP AL                             KYWETEEVKAAFRD
Sbjct:    1 MSSHLLATARLCCRRGGNVRPVYGWHMTAGGPQAALAASIGARASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAEYRKVLTSIASYRLAKAEEIEDPRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKYWETEEVKAAFRD 153
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BLAST of NO12G00730 vs. NCBI_GenBank
Match: CBJ48533.1 (NADH dehydrogenase (ubiquinone) [Ectocarpus siliculosus])

HSP 1 Score: 85.9 bits (211), Expect = 1.500e-13
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 0 
Query:   80 KTATGPVGLEVNPNSRDDFIKQQKTLLEKVKKFPADAEYRKVITSIATYRLGKAEAITDPVALEKELDDGQLEEMLAQGEDELMLMDDYEERKYWE 176
            KT+TG VGL V+ N+R +FI  QK +LEK+K  P  A+YRK + +I+ YRL  A    D   +E E++ GQLEE+L  G++EL L+D Y E + WE
Sbjct:   15 KTSTGLVGLAVDVNARANFIALQKQILEKIKVIPDHAQYRKDVEAISGYRLKVATETEDEETIEDEINHGQLEELLVDGKNELKLIDKYAEWRLWE 110
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BLAST of NO12G00730 vs. NCBI_GenBank
Match: XP_008911217.1 (hypothetical protein PPTG_15678 [Phytophthora parasitica INRA-310] >ETI38028.1 hypothetical protein F443_16126 [Phytophthora parasitica P1569] >ETK78242.1 hypothetical protein L915_15672 [Phytophthora parasitica] >ETL31677.1 hypothetical protein L916_15567 [Phytophthora parasitica] >ETL84907.1 hypothetical protein L917_15390 [Phytophthora parasitica] >ETM38090.1 hypothetical protein L914_15522 [Phytophthora parasitica] >ETN03444.1 hypothetical protein PPTG_15678 [Phytophthora parasitica INRA-310] >ETO66797.1 hypothetical protein F444_16111 [Phytophthora parasitica P1976] >ETP07918.1 hypothetical protein F441_15955 [Phytophthora parasitica CJ01A1] >ETP35948.1 hypothetical protein F442_15979 [Phytophthora parasitica P10297] >KUF76761.1 NADH dehydrogenase 1 alpha subcomplex subunit 5 [Phytophthora nicotianae] >KUF95766.1 Ubiquitin carboxyl-terminal hydrolase [Phytophthora nicotianae])

HSP 1 Score: 81.6 bits (200), Expect = 2.700e-12
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 0 
Query:   80 KTATGPVGLEVNPNSRDDFIKQQKTLLEKVKKFPADAE-YRKVITSIATYRLGKAEAITDPVALEKELDDGQLEEMLAQGEDELMLMDDYEERKYWET 177
            KT+TG VGL+VNPN+R D IK  +  LE+VK  P +A+ YR  +  I  +RL   E   D   +E++++ GQLEE++ Q EDEL ++  Y E K WE+
Sbjct:   13 KTSTGLVGLKVNPNARQDLIKIYRRTLEEVKVLPPEAKNYRNAVEQITNFRLSVVEENKDEDVIERKINCGQLEELIEQAEDELTVIPVYLEHKLWES 110
[Close]
BLAST of NO12G00730 vs. NCBI_GenBank
Match: POM59529.1 (Ndufa5, NADH-ubiquinone oxidoreductase subunit [Phytophthora palmivora var. palmivora])

HSP 1 Score: 81.6 bits (200), Expect = 2.700e-12
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 0 
Query:   80 KTATGPVGLEVNPNSRDDFIKQQKTLLEKVKKFPADAE-YRKVITSIATYRLGKAEAITDPVALEKELDDGQLEEMLAQGEDELMLMDDYEERKYWET 177
            KT+TG VGL+VNPN+R D IK  +  LE+VK  P +A+ YR  +  I  +RL   E   D   +E++++ GQLEE++ Q EDEL ++  Y E K WE+
Sbjct:   13 KTSTGLVGLKVNPNARQDLIKIYRRTLEEVKILPPEAKNYRNAVEQITNFRLNVVETNEDEDVIERKINCGQLEELIEQAEDELSVIPVYLEHKLWES 110
[Close]
BLAST of NO12G00730 vs. NCBI_GenBank
Match: POM75654.1 (Ndufa5, NADH-ubiquinone oxidoreductase subunit [Phytophthora palmivora var. palmivora])

HSP 1 Score: 81.6 bits (200), Expect = 2.700e-12
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 0 
Query:   80 KTATGPVGLEVNPNSRDDFIKQQKTLLEKVKKFPADAE-YRKVITSIATYRLGKAEAITDPVALEKELDDGQLEEMLAQGEDELMLMDDYEERKYWET 177
            KT+TG VGL+VNPN+R D IK  +  LE+VK  P +A+ YR  +  I  +RL   E   D   +E++++ GQLEE++ Q EDEL ++  Y E K WE+
Sbjct:   13 KTSTGLVGLKVNPNARQDLIKIYRRTLEEVKILPPEAKNYRSAVEQITNFRLNVVETNEDEDVIERKINCGQLEELIEQAEDELSVIPVYLEHKLWES 110
[Close]
BLAST of NO12G00730 vs. NCBI_GenBank
Match: CCA22405.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 81.3 bits (199), Expect = 3.600e-12
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 0 
Query:   76 ASYHKTATGPVGLEVNPNSRDDFIKQQKTLLEKVKK--FPADAEYRKVITSIATYRLGKAEAITDPVALEKELDDGQLEEMLAQGEDELMLMDDYEERKYWE 176
            A+  KT+TG VGL VNPN+R D ++  +  LE+VK    P DA YR  +  I  +RL   E   D   +EKE++ GQLEE++ Q EDEL ++  Y E K WE
Sbjct:    9 AAVRKTSTGLVGLAVNPNARKDLMQLYRKTLEEVKNQVLPEDAAYRDAVERITKFRLKVVEENEDEEVIEKEINCGQLEELIEQAEDELSVIPVYLEHKLWE 110
[Close]
BLAST of NO12G00730 vs. NCBI_GenBank
Match: XP_024573809.1 (probable nadh dehydrogenase [Plasmopara halstedii] >CEG37440.1 probable nadh dehydrogenase [Plasmopara halstedii])

HSP 1 Score: 81.3 bits (199), Expect = 3.600e-12
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 0 
Query:   80 KTATGPVGLEVNPNSRDDFIKQQKTLLEKVKKFPADAE-YRKVITSIATYRLGKAEAITDPVALEKELDDGQLEEMLAQGEDELMLMDDYEERKYWET 177
            KT+TG VGL+VNPN+R D IK  +  LE+VK  P +A+ YR  +  I  +RL   E   D   +E++++ GQLEE++ Q EDEL ++  Y E K WE+
Sbjct:   13 KTSTGLVGLKVNPNARQDLIKIYRRTLEEVKVLPPEAKNYRNAVEQITNFRLSVVENNEDEDVIERKINCGQLEELIEQAEDELTVIPVYLEHKLWES 110
[Close]
BLAST of NO12G00730 vs. NCBI_GenBank
Match: XP_009530835.1 (hypothetical protein PHYSODRAFT_354988 [Phytophthora sojae] >EGZ13406.1 hypothetical protein PHYSODRAFT_354988 [Phytophthora sojae])

HSP 1 Score: 80.5 bits (197), Expect = 6.100e-12
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 0 
Query:   80 KTATGPVGLEVNPNSRDDFIKQQKTLLEKVKKFPADAE-YRKVITSIATYRLGKAEAITDPVALEKELDDGQLEEMLAQGEDELMLMDDYEERKYWET 177
            KT+TG VGL+VNPN+R D IK  +  LE+VK  P +A+ YR  +  I  +RL   E+  +   +E++++ GQLEE++ Q EDEL ++  Y E K WE+
Sbjct:   13 KTSTGLVGLKVNPNARQDLIKIYRRTLEEVKILPPEAKNYRNAVEQITNFRLNVVESNEEEDVIERKINCGQLEELIEQAEDELSVIPVYLEHKLWES 110
[Close]
BLAST of NO12G00730 vs. NCBI_GenBank
Match: XP_002903091.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55515.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 80.1 bits (196), Expect = 8.000e-12
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 0 
Query:   80 KTATGPVGLEVNPNSRDDFIKQQKTLLEKVKKFPADAE-YRKVITSIATYRLGKAEAITDPVALEKELDDGQLEEMLAQGEDELMLMDDYEERKYWET 177
            KT+TG VGL+VNPN+R D IK  +  LE+VK  P +A+ YR  +  I  +RL   E   +   +E++++ GQLEE++ Q EDEL ++  Y E K WE+
Sbjct:   13 KTSTGLVGLKVNPNARQDLIKIYRRTLEEVKVLPPEAKNYRNAVEQITNFRLSVVEENEEEDVIERKINCGQLEELIEQAEDELTVIPVYLEHKLWES 110
[Close]
BLAST of NO12G00730 vs. NCBI_GenBank
Match: OWZ02785.1 (hypothetical protein PHMEG_00025591 [Phytophthora megakarya])

HSP 1 Score: 79.0 bits (193), Expect = 1.800e-11
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 0 
Query:   80 KTATGPVGLEVNPNSRDDFIKQQKTLLEKVKKFPADAE-YRKVITSIATYRLGKAEAITDPVALEKELDDGQLEEMLAQGEDELMLMDDYEERKYWET 177
            KT+TG VGL+VNPN+R D IK  +  L++VK  P +A+ YR  +  I  +RL   E   +   +E++++ GQLEE++ Q EDEL ++  Y E K WE+
Sbjct:   13 KTSTGLVGLKVNPNARQDLIKIYRRTLDEVKILPPEAKNYRNAVEQITNFRLNVVETNEEEDVIERKINCGQLEELIEQAEDELSVIPVYLEHKLWES 110
The following BLAST results are available for this feature:
BLAST of NO12G00730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856026.11.600e-2853.59NADH dehydrogenase (ubiquinone) 1 alpha subcomplex... [more]
CBJ48533.11.500e-1347.92NADH dehydrogenase (ubiquinone) [Ectocarpus silicu... [more]
XP_008911217.12.700e-1244.90hypothetical protein PPTG_15678 [Phytophthora para... [more]
POM59529.12.700e-1244.90Ndufa5, NADH-ubiquinone oxidoreductase subunit [Ph... [more]
POM75654.12.700e-1244.90Ndufa5, NADH-ubiquinone oxidoreductase subunit [Ph... [more]
CCA22405.13.600e-1245.10conserved hypothetical protein [Albugo laibachii N... [more]
XP_024573809.13.600e-1244.90probable nadh dehydrogenase [Plasmopara halstedii]... [more]
XP_009530835.16.100e-1243.88hypothetical protein PHYSODRAFT_354988 [Phytophtho... [more]
XP_002903091.18.000e-1243.88conserved hypothetical protein [Phytophthora infes... [more]
OWZ02785.11.800e-1142.86hypothetical protein PHMEG_00025591 [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009981NSK009981Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00730.1NO12G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610346gene_9984Nannochloropsis oceanica (N. oceanica CCMP1779)gene
NDAgene4575Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00730.1NO12G00730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00730 ID=NO12G00730|Name=NO12G00730|organism=Nannochloropsis oceanica|type=gene|length=1436bp
ATGGTGCTTATGATGATGGACCCCCTGGCTCACACCGCCCGCACTGATGA
GCTGTTGACAATGTCCTCCCCACTCAACCCACCCCAACCCGACCCTCCTC
CCAAACAGAGCAACATGTCCTCATTTTTGGTTGCCACCACCCGGCAGTGC
TGCCGGCGGGTAAGCATGCTCCCGACCACCAGGTGGACATCAGCCCCGCT
CTCTGTGCAAGCAACAACAGCAGCGGCGTCCTATCACAAGACCGCTACGG
GGCCCGTGGGCTTGGAAGTGAACCCCAACTCCCGTGACGACTTTATCAAG
CAACAAAAGACCTTGTTGGAGAAGGTCAAGgtgtgtggggggtggggtgg
aagaggataaagggggaaaggagaggaggaggatgggaagaggcggaggg
atagggtgacggggaatgaaagctagttgaaagcacatgtgtgcttttct
tgtgcatgagagcctggacaatagcatttggtgtggagtaccgtggttat
gcggacactaaagtttcatgaattctctgattatagaacaagggcgttca
cagccatacctccctcccctcctcccttctctccttccctcaaaacagAA
ATTTCCTGCTGACGCGGAGTATCGCAAGGTGATTACGTCCATCGCGACCT
ATCGTCTGGGAAAAGCCGAGGCCATCACAGACCCTGTTGCCTTAGAGAAG
GAATTGGACGATGGGCAGTTGGAGGAGATGCTGGCGCAGGGGGAGGATGA
GTTGATGTTGATGGATGATTATGAGGAGAGGAAATATTGGGAGACGGAGG
AGGTCAAGGCGGCTTTTAGGGACTAGAGAAGGAGGGAGGGAAGAAGGGAG
GGGTGGTAGTGGCATTAGAGGAGAGGGGTAGAAGGATGGGATGGAGGGAG
AGAGAAGCAGCTGCTGAATGCGCTCGCGCTTTGAGAATGACAAAGGAAGT
AGGGAGGGAAGGATAATTCAAAAATACTGTGAAATATGATGATATGACTG
GACACAGAAGGAAGGGGGGAGGGAGAGAGGGAGGGAGGGAGGGGAGGACG
GAGGGCTGAGAAAGAGAGCGTTTGTTTTGTGTACGTTTTGCATGTGTTGG
TTGTCGTGGAAGTGCGTATCAGTTATTCAATGCCAGGAGATGCAAGGATA
CTTTAGATCCCAGGGAGTGGCGTTCAGACAGAAGGAGAGAAGGAAAGAAA
GAAACGAACCCCAAAACCAAATAAGCACGAAGAATGAATGGCGATAGACC
AAAGGAAAGACATACATACTCATATTGAACACCTGATACTGCGAAAATTC
AGTCTCGCGCGTGACATTAGCTGCACAGATTTTTTCATGAATTTTATCTT
TCCTTCCAATAAGTTTGGTTGAAGCCCTCCTCTTCTTCTTCTCCTCTTCC
TCTTCTTCTCCTTCTCCTCCTCCTCCTCCTCCTCCT
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protein sequence of NO12G00730.1

>NO12G00730.1-protein ID=NO12G00730.1-protein|Name=NO12G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MVLMMMDPLAHTARTDELLTMSSPLNPPQPDPPPKQSNMSSFLVATTRQC
CRRVSMLPTTRWTSAPLSVQATTAAASYHKTATGPVGLEVNPNSRDDFIK
QQKTLLEKVKKFPADAEYRKVITSIATYRLGKAEAITDPVALEKELDDGQ
LEEMLAQGEDELMLMDDYEERKYWETEEVKAAFRD*
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Synonyms
Publications