NO12G00660, NO12G00660 (gene) Nannochloropsis oceanica

Overview
NameNO12G00660
Unique NameNO12G00660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3118
Alignment locationchr12:231920..235037 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:231920..235037 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G00660 vs. NCBI_GenBank
Match: EWM25952.1 (hypothetical protein Naga_101265g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 114.0 bits (284), Expect = 2.500e-21
Identity = 115/349 (32.95%), Postives = 156/349 (44.70%), Query Frame = 0 
Query:  123 LRQKQREK-LMNERLESILADGRNFKAAARFVMEEMLLAGQEREEGREGGRVGKGAVHTIKVAPRGDSLHLLIVKLVEGKAMEEAVNVLIAVTAHSYPNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKRSVSQGLSSFSXXXXXXXXXXSLMLTYHHLLLSCLQXXXXXXXLRLXXXXXXXXXXXXXXXXXXXXXXXXPSLYTPSLIPSLLSSYLPAAGLSPTSLTFSCAIWCALRAKDFHQVHALLSYMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSWRLVVPPEIWLAVYACTLDELEGGREKGKEGGEEEWQLVQGMHRQAAQEL 471
            ++ +QRE+   N RL+S+L +  N +AAAR++MEEML    + EE      +         V PRGD LH +IV L E + ++ AV +L A TA ++P                                           XX             XXXXXXXXX + +L YHHLL  CL+       L L                        PSLY+PSL+ SLL +Y  + GL PTSLT+SCA+W AL+A+DF QV  +L  M                               + R+ VP E+WLAVYA TL+  EGG   G+E  E+   L++ +HRQAA +L
Sbjct:  104 MQARQREEDEKNTRLQSLLEENGNCRAAARYLMEEMLSIAPQGEEQLRAENLDAAKA---PVPPRGDLLHRMIVNLGEIEEVDTAVRILTASTAVTHP-LDDKTRGSEACKRQAGPIVPLRSSRRGRRPRPLGAIIHSNVRXXXXXXXXXXXXXXXXXXXXXXXXRATLLCYHHLLTLCLRLQRLDLALLLFQSAASRSILFDLPTFNHLLASLPPSLYSPSLLSSLL-AYPISVGLGPTSLTYSCAVWAALQARDFPQVRKILRGM------------------------------HASRMPVPVEMWLAVYAATLEGREGGGTAGRE--EDGAALMEQLHRQAAMKL 415
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BLAST of NO12G00660 vs. NCBI_GenBank
Match: EWM20137.1 (hypothetical protein Naga_101594g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 71.6 bits (174), Expect = 1.400e-8
Identity = 43/73 (58.90%), Postives = 48/73 (65.75%), Query Frame = 0 
Query:  801 PSTSSFAAISAPFARRPDTVEQAGRXXXXXXXXXRLPDLTAMVGASLEEQVKSEYGPMKFRSFFFRAQPSFLS 874
            PS+SSFAA+SAPF R P    + GR   XXXX   L DLT  VG SLEEQ  S YGPM+FRS FF  +P F S
Sbjct:  115 PSSSSFAAVSAPFVRPPPGRGREGRREGXXXXRKGLRDLTGAVGNSLEEQEASPYGPMRFRSSFFNPRPGFTS 187
The following BLAST results are available for this feature:
BLAST of NO12G00660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25952.12.500e-2132.95hypothetical protein Naga_101265g1, partial [Nanno... [more]
EWM20137.11.400e-858.90hypothetical protein Naga_101594g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00660.1NO12G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|324389gene_9979Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101265g1gene4570Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00660.1NO12G00660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00660 ID=NO12G00660|Name=NO12G00660|organism=Nannochloropsis oceanica|type=gene|length=3118bp
CAGGCACGTTTTCCTTTTGGCCCGCTTATCCATTCTTAAGCTAAACGGCA
GTCTGCGAACCTAGTCACCCGAAAAGAGCGACAAGCGACAACCCATCAAG
AAGTAGGATTCCGAGCCTCGTCCCACTCCCCAAATGCTGTCCAGCTCGTC
ACGTCTGGCGGGGTGGCGGTCCCTACTGTGTCATGCCGGCAGCGGCGTGC
GTGGTGTAGGAGGGTCTCATGGATTAAGACCACCAACACGAGCAGCGATA
GCAGCAGCAAGAGGCAATCTGCCTCCTTCCAAAGTGGTGCATCTACGCGG
GTTCAGTAGCACTAGCACCACGACTGCTTCCCAACCGCCACCACCTCCAC
CAGCAGCACACAAAGAGAACAGTAGTTGTTTTGACAGCATCAATAGCGGT
GACGGCAGCGGTTGCGCCTCGTCGTTAGTCGCAGCTGACGAGGAGGACGA
GAAGGGCGACGAGAGGAGGCAGCAGCAGCAGAAGCGGCGGCAGATGGAGC
TACGACAAAAACAACGGGAAAAATTGATGAATGAGCGTCTTGAAAGCATA
CTAGCCGATGGTAGGAACTTCAAGGCGGCCGCTCGCTTTGTGATGGAGGA
AATGCTGTTGGCAGGACAAGAAAGGGAAGAGGGAAGAGAAGGAGGAAGGG
TCGGGAAGGGTGCCGTGCATACGATAAAGGTAGCGCCAAGAGGAGACTCG
CTACATCTATTGATTGTGAAATTAGTCGAGGGAAAAGCAATGGAGGAAGC
GGTCAACGTCCTGATTGCCGTAACCGCACACAGCTATCCCAATACCAGTC
AAAGTAGTAGTAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAGCAGCAGC
AGCAGCAGGAATGCAAGCAATACTACTCCTACTTCTTCCACCTCCTCATC
AAGGCGAGGACGTCGAAATCGCCTCTTCAAAAGGAGCGTTTCTCAGGGTC
TTTCCTCCTTCTCCCTATCCTCCTTCTCTTCCCAGTCCAAAAGCTCCCTG
ATGCTCACCTATCACCACCTCCTCCTTTCCTGCCTGCAACAGCATCATCC
CGCCCTCGCCCTCCGCCTCTTTCACTCCGCCGCCCTCCACTCCCTCCTTC
TTGACCTCCCTCTGCTCAACCATCTCCTCGCCTCTCTCCCTCCCTCCCTC
TATACCCCTTCTCTCATTCCCTCCCTCCTCTCCTCCTACCTGCCCGCGGC
GGGCCTCTCCCCTACCTCCCTTACTTTTTCCTGTGCAATATGGTGTGCTC
TGCGTGCCAAAGACTTTCATCAAGTCCATGCGCTTCTATCCTATATGCAG
CAAGACCAGCAGCAACCGCACCAACACCAGCACCAGCACCAGTACCACCC
ACACTACCCGCAGCGGCAGCAGCAGCCGCCACCTCTGCGTTCCTGGCGTT
TGGTTGTTCCTCCCGAAATCTGGCTGGCAGTGTATGCGTGTACCCTGGAT
GAGCTCGAGGGAGGGAGGGAGAAAGGGAAGGAGGGAGGGGAGGAGGAATG
GCAGCTGGTCCAGGGGATGCATAGGCAGGCGGCGCAGGAGTTGGAGGTAG
CGATGGAGAGAATGTTGAGCAGACTCGCGGTAGGCGTTGCGATGGTGAGT
GGGAGGGAGGGAGGGAAGGAGGGAGGGGTGGAAGACGGGGAGGAAGAATG
GGAGGAGGGAGAGGAGGAGGAGGAGGAGGAAGGAGAGGAGGAATTTGGGG
GGCTGGTGGTGGGGGATGTGCCGTTGTTGTTGAACGAATACGAGGAGGAT
GAAGATGAGGAAGAAGGAAGGGGGGAGGAAAGGAAGGGAGGGGGCCTCTA
TGGGGTCCGAGGACGGAGAGGAGGGAGGGAGGTAGGGAGGGTGGGGTGGG
CGGGACGAGTGCCAGTGGTGAGTGGAAGATTGTTAAGAGGCGTGTTTACG
TCGATGGGGGAGGAAGGGAGGAGGAGGGAAGGGAAGGGAGAAGATGACGA
AGAGGAAGAGGAGCATGACGACGAGGAGGAGGAGGAGGAGTGGGAGGGAG
AAGAAGAGGAGGCGGAGGAGGAGGAGGGGGAGGGGGAGGAGGAGGCGTGG
CGTTTGGCTCTCGCAGAAGAACGACGGGCCATGCAGTCGACTGTGAGCAA
CCTCCCTCTTTTGGGGAGCGAGGCCATCCTCCCTTCCCTCCCTCCCTCCC
TCCCTTCCTCGTCCTCGGCCTCGGCGCTGCGGGCGTGGAGGAAGGAAAAT
TTAATTCTGCCCTGGGGTCCACTTCCTGAGAAATGGCGAGGGATAGGGAA
GATCGATCCCTCTGTGTGGGTGCTTGGGGAGGGAGGTGAGGAAGAGGAGG
AGGAAGGGGGGGAGGGGCACGACGTTTGGTTGGAGGAAGAGGATGGGGAG
GAGGAAGAAGAGGAGGGGCGGGAGGAGAGGGAGTTCGTGCTTGCCGGGGG
GCTGAGGTCGTCGTCGTCGTCAACGCTGCTCCTGCATGAGCAGCGGCGGC
AGCAGCAGCAGCAGCAGGAGGAGGGGGAGGAGGGGGAAGGAGAGAGACGA
GGACGAGGAGGAGGAGGAGTACGTCATCCTTCTCCCTCTACTTCCTCTTT
TGCTGCTATCTCTGCTCCCTTCGCCCGTCGTCCCGATACTGTCGAGCAGG
CAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGGCTGCCAGATCTA
ACGGCGATGGTCGGGGCGTCGCTGGAGGAGCAGGTAAAGAGTGAATACGG
TCCCATGAAATTTCGGAGTTTCTTCTTCCGAGCGCAGCCTTCTTTCCTGT
CGCCGTTTACGAGGGGCATGATGGGGAGGGAGGGAGGGAGGGAAGGAGGG
AGGGAGGAAGGGAAAGAGGAGGGGGCGAGGGCGGTGTTGTGCGACGTGTT
GAGTGTACTGGACTATCACCATGGAGGGGGAGGAATGGGGGGAAGGCGGG
GAGCGTGGACACGGGGCGTGGAGAGGGAGAACGAGGAGGAGGAGAAGAAG
GAAGAGTGAGATGGTGTATATTGATTGTTTAAATACCAAGGGGAGAGGGA
GGTGGGTGGAAGGGAGGAAGGAAGGGAGGGAAGGAGGGAGGGAGGGGTCA
TGTACACAAGTTGCTCCTGCTCATGAGAAGCTTCTCTTTATTCAAAAGAG
GAGGGATGGAGGGGGGGG
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protein sequence of NO12G00660.1

>NO12G00660.1-protein ID=NO12G00660.1-protein|Name=NO12G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=942bp
MLSSSSRLAGWRSLLCHAGSGVRGVGGSHGLRPPTRAAIAAARGNLPPSK
VVHLRGFSSTSTTTASQPPPPPPAAHKENSSCFDSINSGDGSGCASSLVA
ADEEDEKGDERRQQQQKRRQMELRQKQREKLMNERLESILADGRNFKAAA
RFVMEEMLLAGQEREEGREGGRVGKGAVHTIKVAPRGDSLHLLIVKLVEG
KAMEEAVNVLIAVTAHSYPNTSQSSSSSSSSSSSSSSSSSSRNASNTTPT
SSTSSSRRGRRNRLFKRSVSQGLSSFSLSSFSSQSKSSLMLTYHHLLLSC
LQQHHPALALRLFHSAALHSLLLDLPLLNHLLASLPPSLYTPSLIPSLLS
SYLPAAGLSPTSLTFSCAIWCALRAKDFHQVHALLSYMQQDQQQPHQHQH
QHQYHPHYPQRQQQPPPLRSWRLVVPPEIWLAVYACTLDELEGGREKGKE
GGEEEWQLVQGMHRQAAQELEVAMERMLSRLAVGVAMVSGREGGKEGGVE
DGEEEWEEGEEEEEEEGEEEFGGLVVGDVPLLLNEYEEDEDEEEGRGEER
KGGGLYGVRGRRGGREVGRVGWAGRVPVVSGRLLRGVFTSMGEEGRRREG
KGEDDEEEEEHDDEEEEEEWEGEEEEAEEEEGEGEEEAWRLALAEERRAM
QSTVSNLPLLGSEAILPSLPPSLPSSSSASALRAWRKENLILPWGPLPEK
WRGIGKIDPSVWVLGEGGEEEEEEGGEGHDVWLEEEDGEEEEEEGREERE
FVLAGGLRSSSSSTLLLHEQRRQQQQQQEEGEEGEGERRGRGGGGVRHPS
PSTSSFAAISAPFARRPDTVEQAGREGGREGGRERLPDLTAMVGASLEEQ
VKSEYGPMKFRSFFFRAQPSFLSPFTRGMMGREGGREGGREEGKEEGARA
VLCDVLSVLDYHHGGGGMGGRRGAWTRGVERENEEEEKKEE*
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Synonyms
Publications