NO12G00630, NO12G00630 (gene) Nannochloropsis oceanica

Overview
NameNO12G00630
Unique NameNO12G00630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1183
Alignment locationchr12:227119..228301 +

Link to JBrowse

Properties
Property NameValue
DescriptionProteasome subunit alpha type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:227119..228301 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR023332Proteasome_suA-type
IPR034642Proteasome_subunit_alpha6
IPR001353Proteasome_sua/b
IPR000426Proteasome_asu_N
Homology
[Close]
BLAST of NO12G00630 vs. NCBI_GenBank
Match: EWM25954.1 (proteasome subunit alpha type-6 [Nannochloropsis gaditana])

HSP 1 Score: 448.4 bits (1152), Expect = 1.500e-122
Identity = 224/246 (91.06%), Postives = 235/246 (95.53%), Query Frame = 0 
Query:    1 MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMALQSVLSTDFRGTEIEVGVVEGVNGFFHTLKEEEIDMHLTAITERDA 247
            MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANS+GLTSVAVRGK+CVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLR EAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEA NWLEKKV ++  + T+ TV++AIMALQSVLSTDF+G+EIEVGVVEGV GFFHTL E EID HLTAITE+DA
Sbjct:    1 MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANSEGLTSVAVRGKECVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRQEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEATNWLEKKVGDLGGLGTEETVELAIMALQSVLSTDFKGSEIEVGVVEGVGGFFHTLTEGEIDHHLTAITEKDA 246
[Close]
BLAST of NO12G00630 vs. NCBI_GenBank
Match: XP_005856031.1 (20S proteasome subunit alpha 1 [Nannochloropsis gaditana CCMP526] >EKU20324.1 20S proteasome subunit alpha 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 434.5 bits (1116), Expect = 2.200e-118
Identity = 220/246 (89.43%), Postives = 231/246 (93.90%), Query Frame = 0 
Query:    1 MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMALQSVLSTDFRGTEIEVGVVEGVNGFFHTLKEEEIDMHLTAITERDA 247
            MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANS+GLTSVAVRGK+CVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLR EAHEFRFKYGYDIPVHVLAKRIADIA    QQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEA NWLEKKV ++  + T+ TV++AIMALQSVLSTDF+G+EIEVGVVEGV GFFHTL E EID HLTAITE+DA
Sbjct:    1 MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANSEGLTSVAVRGKECVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRQEAHEFRFKYGYDIPVHVLAKRIADIA----QQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEATNWLEKKVGDLGGLGTEETVELAIMALQSVLSTDFKGSEIEVGVVEGVGGFFHTLTEGEIDHHLTAITEKDA 242
[Close]
BLAST of NO12G00630 vs. NCBI_GenBank
Match: CBJ30371.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 334.0 bits (855), Expect = 4.100e-88
Identity = 169/245 (68.98%), Postives = 199/245 (81.22%), Query Frame = 0 
Query:    4 RDSQYDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYK--VDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMALQSVLSTDFRGTEIEVGVVEGVNGFFHTLKEEEIDMHLTAITERDA 247
            RDS YDH IT+FSPQGRLYQIEYAFKAA   GLTSV+VRGK+   +VTQKKVPDRLIDP+SV+NI++ITDK+G +MTGM  DSR  V RLR EAHEFRFKYGYD P HVLA+RIADIAQVYTQQASMRALA V ML+ VDDE+GPQL+K  VDPAGH+FP+KAT++G K+ EA+NWLEKKV  +  MD D+T++ AI  LQ+V  TDFRG E+EVGVV G  G F TL E+ I+ HL AI E ++
Sbjct:    3 RDSNYDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKGVVDPAGHYFPYKATSSGSKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAV--TDFRGNEVEVGVVSG-KGRFKTLDEDSIEAHLVAINEMES 244
[Close]
BLAST of NO12G00630 vs. NCBI_GenBank
Match: GAX92198.1 (proteasome subunit alpha type-6, putative [Pythium insidiosum])

HSP 1 Score: 310.1 bits (793), Expect = 6.300e-81
Identity = 157/239 (65.69%), Postives = 188/239 (78.66%), Query Frame = 0 
Query:    8 YDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMALQSVLSTDFRGTEIEVGV-VEGVNGFFHTLKEEEIDMHLTAITERD 246
            YD HITIFSP+GRLYQIEYAF AA   GLTSV VRGKDC   VTQKKV D+LIDP SV++++ IT  +GA++TG+  D+RAQV RLR EAH+F  KYGY IP HVLAKRIAD+AQVYTQ ASMRA   +  L+ VDDE+GPQL+KVDPAGHF+ +KAT++G K+ EA N+LEKK+   ++MDT++T+  AI  LQSVLS DFR  EIEVGV VEG  G F  L EEEI+ HLTAI+ERD
Sbjct:    6 YDRHITIFSPEGRLYQIEYAFNAAKECGLTSVGVRGKDCAVFVTQKKVQDKLIDPDSVTSVFPITPSIGALVTGLPADARAQVQRLRYEAHDFEHKYGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITFLISVDDEKGPQLFKVDPAGHFWGYKATSSGPKEQEAQNYLEKKIKANASMDTETTLHTAITCLQSVLSADFRPNEIEVGVIVEG--GLFRQLTEEEIEGHLTAISERD 242
[Close]
BLAST of NO12G00630 vs. NCBI_GenBank
Match: POM57651.1 (Proteasome subunit alpha type-6 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 306.6 bits (784), Expect = 7.000e-80
Identity = 157/239 (65.69%), Postives = 187/239 (78.24%), Query Frame = 0 
Query:    8 YDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMALQSVLSTDFRGTEIEVGVVEGVNG-FFHTLKEEEIDMHLTAITERD 246
            YD HITIFSP+GRLYQIEYAF+AA    LTSVAVRGKD    VTQKKV D+LI+P SV+N++QIT ++G +MTG+  DS+AQV RLR EAHEF  K+GY IP HVLAKRIAD+AQVYTQ ASMRA   + ML+ VDDE+GPQL+K+DPAGHF+ +KAT+AGVK+ EA N+LEKK+     MD ++T+  AI  LQSVLS DFR  EIEVGVV  V G  F  L EEEI+ HLTAI+ERD
Sbjct:    6 YDRHITIFSPEGRLYQIEYAFRAAKESTLTSVAVRGKDSAVFVTQKKVQDKLIEPDSVTNVFQITPEIGCLMTGLYADSKAQVQRLRYEAHEFENKFGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITMLISVDDEKGPQLFKIDPAGHFWGYKATSAGVKEQEAQNYLEKKIKANPAMDQETTLHTAITCLQSVLSADFRPNEIEVGVV--VQGQRFRKLTEEEIEAHLTAISERD 242
[Close]
BLAST of NO12G00630 vs. NCBI_GenBank
Match: XP_009526410.1 (hypothetical protein PHYSODRAFT_285915 [Phytophthora sojae] >EGZ17352.1 hypothetical protein PHYSODRAFT_285915 [Phytophthora sojae])

HSP 1 Score: 305.4 bits (781), Expect = 1.600e-79
Identity = 157/239 (65.69%), Postives = 187/239 (78.24%), Query Frame = 0 
Query:    8 YDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMALQSVLSTDFRGTEIEVGVVEGVNG-FFHTLKEEEIDMHLTAITERD 246
            YD HITIFSP+GRLYQIEYAF+AA    LTSVAVRGKD    VTQKKV D+LI+P SV+N++QIT ++G +MTG+  DS+AQV RLR EAHEF  K+GY IP HVLAKRIAD+AQVYTQ ASMRA   V ML+ VDDE+GPQL+K+DPAGHF+ +KAT+AGVK+ EA N+LEKK+     MD ++T+  AI  LQSVLS DFR  EIEVGVV  V G  F  L E+EI+ HLTAI+ERD
Sbjct:    6 YDRHITIFSPEGRLYQIEYAFRAAKESTLTSVAVRGKDSAVFVTQKKVQDKLIEPDSVTNVFQITPEIGCLMTGLYADSKAQVQRLRYEAHEFENKFGYKIPCHVLAKRIADVAQVYTQHASMRAFGVVTMLISVDDEKGPQLFKIDPAGHFWGYKATSAGVKEQEAQNYLEKKIKANPAMDYETTLHTAITCLQSVLSADFRPNEIEVGVV--VQGQRFRKLPEDEIEAHLTAISERD 242
[Close]
BLAST of NO12G00630 vs. NCBI_GenBank
Match: XP_002902293.1 (proteasome subunit alpha type-6, putative [Phytophthora infestans T30-4] >EEY56965.1 proteasome subunit alpha type-6, putative [Phytophthora infestans T30-4])

HSP 1 Score: 305.4 bits (781), Expect = 1.600e-79
Identity = 155/239 (64.85%), Postives = 187/239 (78.24%), Query Frame = 0 
Query:    8 YDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMALQSVLSTDFRGTEIEVG-VVEGVNGFFHTLKEEEIDMHLTAITERD 246
            YD HITIFSP+GRLYQIEYAF+AA    LTSVAVRGKD    VTQKKV D+LI+P SV+N++QIT ++G +MTG+  DS+AQV RLR EAHEF  K+GY +P HVLAKRIAD+AQVYTQ ASMRA   + ML+ VDDE+GPQL+K+DPAGHF+ +KAT+AGVK+ EA N+LEKK+     MD ++T+  AI  LQSVLS DFR  EIEVG VVEG    F  L E+EI+ HLTAI+ERD
Sbjct:    6 YDRHITIFSPEGRLYQIEYAFRAAKESTLTSVAVRGKDSAVFVTQKKVQDKLIEPDSVTNVFQITPEIGCLMTGLYADSKAQVQRLRFEAHEFENKFGYKVPCHVLAKRIADVAQVYTQHASMRAFGVITMLISVDDEKGPQLFKIDPAGHFWGYKATSAGVKEQEAQNYLEKKIKANPAMDYETTLHTAITCLQSVLSADFRPNEIEVGVVVEGQR--FRQLTEDEIEAHLTAISERD 242
[Close]
BLAST of NO12G00630 vs. NCBI_GenBank
Match: OWZ24808.1 (Proteasome subunit alpha type-6 [Phytophthora megakarya])

HSP 1 Score: 305.4 bits (781), Expect = 1.600e-79
Identity = 155/239 (64.85%), Postives = 188/239 (78.66%), Query Frame = 0 
Query:    8 YDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMALQSVLSTDFRGTEIEVGVVEGVNG-FFHTLKEEEIDMHLTAITERD 246
            YD HITIFSP+GRLYQIEYAF+AA    LTSVAVRGKD    VTQKKV D+LI+P SV+N++QIT ++G +MTG+  DS+AQV RLR EAHEF  K+GY IP HVLAKRIAD+AQVYTQ ASMRA   + ML+ VD+E+GPQL+K+DPAGHF+ +KAT+AGVK+ EA N+LEKK+     MD ++T+  AI  LQSVLS DFR  EIEVGVV  + G  F  L EEEI++HLTAI+ERD
Sbjct:    6 YDRHITIFSPEGRLYQIEYAFRAAKESTLTSVAVRGKDSAVFVTQKKVQDKLIEPDSVTNVFQITPEIGCLMTGLYADSKAQVQRLRYEAHEFENKFGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITMLISVDEEKGPQLFKIDPAGHFWGYKATSAGVKEQEAQNYLEKKIKANPAMDQETTLHTAITCLQSVLSADFRPNEIEVGVV--IQGQRFRQLTEEEIEVHLTAISERD 242
[Close]
BLAST of NO12G00630 vs. NCBI_GenBank
Match: ETI45522.1 (hypothetical protein F443_09944 [Phytophthora parasitica P1569] >ETK85476.1 hypothetical protein L915_09741 [Phytophthora parasitica] >ETL38875.1 hypothetical protein L916_09645 [Phytophthora parasitica] >ETL92024.1 hypothetical protein L917_09568 [Phytophthora parasitica] >ETM45321.1 hypothetical protein L914_09611 [Phytophthora parasitica] >ETO74136.1 hypothetical protein F444_10040 [Phytophthora parasitica P1976] >ETP15302.1 hypothetical protein F441_09894 [Phytophthora parasitica CJ01A1] >ETP43379.1 hypothetical protein F442_09848 [Phytophthora parasitica P10297])

HSP 1 Score: 305.1 bits (780), Expect = 2.000e-79
Identity = 156/239 (65.27%), Postives = 187/239 (78.24%), Query Frame = 0 
Query:    8 YDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMALQSVLSTDFRGTEIEVGVVEGVNG-FFHTLKEEEIDMHLTAITERD 246
            YD HITIFSP+GRLYQIEYAF+AA    LTSVAVRGKD    VTQKKV D+LI+P SV+N++QIT ++G +MTG+  DS+AQV RLR EAHEF  K+GY IP HVLAKRIAD+AQVYTQ ASMRA   + ML+ VDDE+GPQL+K+DPAGHF+ +KAT+AGVK+ EA N+LEKK+     MD ++T+  AI  LQSVLS DFR  EIEVGVV  V G  F  L E+EI+ HLTAI+ERD
Sbjct:    6 YDRHITIFSPEGRLYQIEYAFRAAKESTLTSVAVRGKDSAVFVTQKKVQDKLIEPDSVTNVFQITPEIGCLMTGLYADSKAQVQRLRYEAHEFENKFGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITMLISVDDEKGPQLFKIDPAGHFWGYKATSAGVKEQEAQNYLEKKIKANPAMDYETTLHTAITCLQSVLSADFRPNEIEVGVV--VQGQRFRQLTEDEIETHLTAISERD 242
[Close]
BLAST of NO12G00630 vs. NCBI_GenBank
Match: XP_024572902.1 (proteasome subunit alpha type-6 [Plasmopara halstedii] >CEG36533.1 proteasome subunit alpha type-6 [Plasmopara halstedii])

HSP 1 Score: 305.1 bits (780), Expect = 2.000e-79
Identity = 154/239 (64.44%), Postives = 189/239 (79.08%), Query Frame = 0 
Query:    8 YDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMALQSVLSTDFRGTEIEVGVV-EGVNGFFHTLKEEEIDMHLTAITERD 246
            YD HITIFSP+GRLYQIEYAF+AA    LTSVAVRGKD    VTQKKV D+LI+P SV+N+++IT ++G +MTG+  DS+AQV RLR EAHEF  K+GY IP HVLAKRIAD+AQVYTQ ASMRA   + ML+ VDDE+GPQL+K+DPAGHF+ +KAT+AGVK+ EA N+LEKK+    +MD ++T+  AI  LQ+VLS DFR  EIEVGV+ EG    F  L E+EI+MHLTAI+ERD
Sbjct:    6 YDRHITIFSPEGRLYQIEYAFRAAKESTLTSVAVRGKDSAVFVTQKKVQDKLIEPDSVTNVFRITPEIGCLMTGLYADSKAQVQRLRFEAHEFENKFGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITMLISVDDEKGPQLFKIDPAGHFWGYKATSAGVKEQEAQNYLEKKIKANPSMDYETTLHTAITCLQTVLSADFRPNEIEVGVILEGHR--FRKLTEDEIEMHLTAISERD 242
The following BLAST results are available for this feature:
BLAST of NO12G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25954.11.500e-12291.06proteasome subunit alpha type-6 [Nannochloropsis g... [more]
XP_005856031.12.200e-11889.4320S proteasome subunit alpha 1 [Nannochloropsis ga... [more]
CBJ30371.14.100e-8868.98conserved unknown protein [Ectocarpus siliculosus][more]
GAX92198.16.300e-8165.69proteasome subunit alpha type-6, putative [Pythium... [more]
POM57651.17.000e-8065.69Proteasome subunit alpha type-6 [Phytophthora palm... [more]
XP_009526410.11.600e-7965.69hypothetical protein PHYSODRAFT_285915 [Phytophtho... [more]
XP_002902293.11.600e-7964.85proteasome subunit alpha type-6, putative [Phytoph... [more]
OWZ24808.11.600e-7964.85Proteasome subunit alpha type-6 [Phytophthora mega... [more]
ETI45522.12.000e-7965.27hypothetical protein F443_09944 [Phytophthora para... [more]
XP_024572902.12.000e-7964.44proteasome subunit alpha type-6 [Plasmopara halste... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009972NSK009972Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00630.1NO12G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100809g1gene4568Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00630.1NO12G00630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00630 ID=NO12G00630|Name=NO12G00630|organism=Nannochloropsis oceanica|type=gene|length=1183bp
ATGTCGGGCCGGGACTCCCAGTACGACCACCACATCACCATCTTCTCGCC
GCAAGGTCGTTTATATCAGATTGAGTATGCATTCAAGGCAGCGAACAGCG
ATGGGCTCACATCGGTAGCCGTGCGGGGGAAAGACTGTGTCGCCGTCGTC
ACGCAGAAGAAGGTGCCTGACCGTTTGATTGgtacgttggccttgcggtc
agcaggctatagtttgatccctcgggagagtggggccttggatacccgtg
cttgggtggtgatgacgacaggattcgcaccgacatcagacgttcaccgt
cccttccctcctcgccgtcctcccctctctctcctccccccctcagATCC
GTCCTCTGTCTCGAACATTTACCAAATCACGGACAAAGTCGGCGCAGTCA
TGACAGGCATGACGACAGATAGCCGGGCACAGGTCACGCGTCTGCGCTCA
GAGGCTCACGAGTTCCGATTTAAGTATGGCTACGACATTCCAGTTCACGT
GCTTGCGAAGCGGATTGCGGACATTGCCCAGgtaacctcccccccttcct
cccccctccctttcttcgcccgttcatctctctctgtgccctgaatcgtc
cgcccgcggtgtgcacaggtatactcatcggccatccccccatccctccc
tcccttcctcccttccctccccccttagGTGTACACTCAACAAGCCTCCA
TGCGCGCCCTGGCCACCGTGTGCATGCTCGTGGGCGTGGACGATGAGCGC
GGACCCCAGCTGTACAAGGTTGATCCGGCGGGGCACTTTTTCCCCTTCAA
Ggtaaggagagatctgaaaggagggagggagggagggaaggagagaggca
gagagcgtccgaataaagcggaacagcccagctgacgctcctccctcttc
cttcctcttaccttccatcttccttaaatagGCGACTGCTGCGGGCGTGA
AGCAAGACGAGGCTATCAATTGGTTGGAGAAGAAGGTTTCGGAGATGAGC
ACGATGGACACAGACAGTACCGTGCAGATGGCGATTATGGCCCTGCAGTC
CGTCTTGTCGACTGATTTCCGGGGGACAGAGATCGAGGTGGGGGTGGTAG
AGGGGGTGAACGGGTTCTTTCACACTTTGAAAGAGGAAGAGATTGATATG
CACTTGACGGCGATTACCGAGAGGGATGCGTAA
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protein sequence of NO12G00630.1

>NO12G00630.1-protein ID=NO12G00630.1-protein|Name=NO12G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MSGRDSQYDHHITIFSPQGRLYQIEYAFKAANSDGLTSVAVRGKDCVAVV
TQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRSEAHEF
RFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQL
YKVDPAGHFFPFKATAAGVKQDEAINWLEKKVSEMSTMDTDSTVQMAIMA
LQSVLSTDFRGTEIEVGVVEGVNGFFHTLKEEEIDMHLTAITERDA*
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Synonyms
Publications