NO12G00620, NO12G00620 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G00620 vs. NCBI_GenBank
Match: EWM25967.1 (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana]) HSP 1 Score: 364.4 bits (934), Expect = 4.000e-97 Identity = 196/269 (72.86%), Postives = 222/269 (82.53%), Query Frame = 0 Query: 1 MELPPWEVL--LTLLQTGLILLLFLVVRQVLAWKGRKHFPPLTCGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALREIGVPGIHPVILDVAKLDSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDATVEFHDMDMMRHMFDVNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPRYGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPELQQQQQQSHVKNDTSVS 268 MELPP EV+ L LLQ LLLFL++RQ WKGRK+FPPLT GSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALR++GV GIHPVI+DVAK SV+AC HVLSLL KT+PPL+ V+NNAGLLQDATVEFHDM MRHMF+VNYFGL++VSS FLPLLR SSS +GRLINIGSV+GKVSFPRYGAYAASKHAVEA+TD+LRAEL PAGVSVSL+QPGFCRTELF+RGV ++++++H VS Sbjct: 15 MELPPLEVVIKLILLQLCGTLLLFLLIRQCFVWKGRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNH--QGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVV-----REKKEAHAAGQQIVS 276
BLAST of NO12G00620 vs. NCBI_GenBank
Match: EWM28976.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 187.2 bits (474), Expect = 8.700e-44 Identity = 138/361 (38.23%), Postives = 195/361 (54.02%), Query Frame = 0 Query: 12 LLQTGLILLLFLVVRQVLAWKGRKHFPPL-------TCGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQAL---------------REIGVPG------IHPVILDVAKLDSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDA-TVEFHDMDMMRHMFDVNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPRYGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPELQQQQQQSHVKNDTSVSPAAKKAYPFFYTQKFEKKNAGPMENGSDPVVVCQAMHHALTSAYPKTRYPVAKINRAKVALVFLVRQLLPDRVFDK 344 LL G++LL L++ V+ RK +P L T G VL+TG S+GIGR AA YLA++GF V AGVRK +D +AL R G +H +ILD+ K + A V LS + P + ++NNAG+ A VEF ++ R+ F+VN++G + V+ FLPLLR A P+GR++N+ S+AG V+ P Y+ +K A+EA++DTLR EL GVSVS+IQPG+ R+E+F G A + Q + Q+ V+ Y YT +K NA + SDP+V +A+HHALTS YPKTRY V +N + LL DR+ D+ Sbjct: 25 LLAFGIMLLAVLLLPLVVYLISRKPYPTLKTLSSTKTLGGVLVTGASTGIGRHAAFYLARQGFLVFAGVRKPADGEALLRAYLDEESKQTSKSRSRGKVSPAKQGVLHFLILDITKPFQIAAAVRSVQEELSRRGGLPFLGLVNNAGVTGGADPVEFLPLEHNRNTFEVNFYGPLAVTQAFLPLLRQA-----------PQGRIVNVSSMAGIVTRPLGATYSCTKFALEALSDTLRVELGHLGVSVSVIQPGYIRSEIF--GKADEQHQHRMQELPVE--------CSALYGHLYT--VDKTNA-LIAKASDPIVCSRAIHHALTSPYPKTRYLVGNVNGTPAYWLGWGIWLLNDRLMDR 361
BLAST of NO12G00620 vs. NCBI_GenBank
Match: XP_004990606.1 (oxidoreductase [Salpingoeca rosetta] >EGD77262.1 oxidoreductase [Salpingoeca rosetta]) HSP 1 Score: 186.8 bits (473), Expect = 1.100e-43 Identity = 114/333 (34.23%), Postives = 186/333 (55.86%), Query Frame = 0 Query: 10 LTLLQTGLILLLFLVVRQVLAWKGRKHFPPLTCGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALREIGVPGIHPVILDVAKLDSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDATVEFHDMDMMRHMFDVNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPRYGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPELQQQQQQSHVKNDTSVSPAAKKAYPFFYTQKFEKKNAGPMENGSDPVVVCQAMHHALTSAYPKTRYPVAKINRAKVALVFLVRQLLPDRVFD 343 ++L + G+++ + V+ +L K+FP G++L+TGTS+GIGR AAV LA++G+TV A VRK++D +L++ GV + P+++DV K D + + + K L+ ++NNAG+ +E HD+D +R MF+VN FG+V+V+ FLP++R KGR++N+GS+AG ++ P +Y+A+K +E + D LR E+ P GVSVS+++P + T + + + + VS + Y +F+ FE+K P V +A+ HALTS P+TRY VA + L+ LLPDR+ D Sbjct: 1 MSLCKPGVLMGILAVLLYLLFVFPVKYFPVHDSGAILITGTSTGIGRHAAVELAKKGYTVYATVRKQADVDSLKKEGVNTLIPIVMDVTKPDQIASAVDTI-----KKGGHKLIGLVNNAGISARVPLEAHDLDRIRSMFEVNVFGVVSVTQAFLPMIRE------------NKGRIVNVGSLAGFIAMPGSASYSATKFGLEGLNDALRREMAPFGVSVSIVEPAYVSTAIASKSTGEAAATRW-----------VSREMQDTYAWFFAD-FEEKRLKGEALADGPEVTTKAITHALTSRTPETRYIVANTYGIPAKIAALINWLLPDRLGD 304
BLAST of NO12G00620 vs. NCBI_GenBank
Match: XP_005855962.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >EKU20405.1 short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 186.8 bits (473), Expect = 1.100e-43 Identity = 138/363 (38.02%), Postives = 195/363 (53.72%), Query Frame = 0 Query: 12 LLQTGLILLLFLVVRQVLAWKGRKHFPPL-------TCGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALREI-----------------------GVPGIHPVILDVAKLDSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDA-TVEFHDMDMMRHMFDVNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPRYGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPELQQQQQQSHVKNDTSVSPAAKKAYPFFYTQKFEKKNAGPMENGSDPVVVCQAMHHALTSAYPKTRYPVAKINRAKVALVFLVRQLLPDRVFDK 344 LL G++LL L++ V+ RK +P L T G VL+TG S+GIGR AA YLA++GF V AGVRK +D +AL + GV +H +ILD+ K + A V LS + P + ++NNAG+ A VEF ++ R+ F+VN++G + V+ FLPLLR A P+GR+IN+ S+AG V+ P Y+ +K A+EA++DTLR EL GVSVS+IQPG+ R+E+F G A + Q + Q+ + Y YT +K NA + SDP+V +A+HHALTS YPKTRY V +N + LL DR+ D+ Sbjct: 14 LLAFGIMLLAVLLLPLVVYLISRKPYPTLKTLSSTKTLGGVLVTGASTGIGRHAAFYLARQGFLVFAGVRKPADGEALLKAYLDEESKQTSKSRSRGKVSPAKQGV--LHYLILDITKPFQIAAAVRSVQEELSRRGGLPFLGLVNNAGVTGGADPVEFLPLEHNRNTFEVNFYGPLAVTQAFLPLLRQA-----------PQGRIINVSSMAGIVTRPLGATYSCTKFALEALSDTLRVELGHLGVSVSVIQPGYIRSEIF--GKADEQHQHRMQE--------LPEECSALYGHLYT--VDKTNA-LIAKASDPIVCSRAIHHALTSPYPKTRYLVGNVNGTPAYWLGWGIWLLNDRLMDR 350
BLAST of NO12G00620 vs. NCBI_GenBank
Match: XP_005854162.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >EKU22195.1 short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >EWM23126.1 short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 181.8 bits (460), Expect = 3.700e-42 Identity = 117/327 (35.78%), Postives = 178/327 (54.43%), Query Frame = 0 Query: 20 LLFLVVRQVLAWKGRKHFPPLTCGSVLLTGTSSGIGRTAAVYLAQR--GFTVLAGVRKESDAQALREIGVPGIHPVILDVAKLDSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDATVEFHDMDMMRHMFDVNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPRYGAYAASKHAVEAITDTLRAELT-PAGVSVSLIQPGFCRTELFVRGVAQPELQQQQQQSHVKNDTSVSPAAKKAY-PFFYTQKFEKKNAGPMENGSDPVVVCQAMHHALTSAYPKTRYPVAKINRAKVALVFLVRQLLPDRVFD 343 ++F +V + + RK FP T G++L+TG S+GIG AA++LA TV AGVRK+ DA+ ++ + + + P+ +D S+ A A + S T P++ +INNAG+ ++ +EF M +R + + N G ++ +P LR + +GR++ I SV GKV+ GAY ASKHA EA++D LR EL+ P GVSVS+++P + RTE+F G Q E+ +T +SP + Y PFFY + + + G PVV A+ HAL + YPKTRY VA + L + +LPDR+ D Sbjct: 13 VIFALVPFAVEFLTRKSFPVHTTGAILVTGASTGIGNHAAIHLATHYPDVTVYAGVRKDVDAENIKALHLSNLLPLHIDTTDQSSMDAAVAFLHS-----TSLPIIGLINNAGVSTNSPIEFLPMAKLRQLLETNVVGPTYLTQQLIPSLRAS------------QGRVVQISSVLGKVTLATRGAYCASKHAFEALSDVLRLELSGPFGVSVSVVEPAYVRTEIF--GKIQQEI-----------ETLLSPELRSLYGPFFYREDQAARKKAQIAKGDSPVVTSTAIEHALFADYPKTRYVVANFAGVRADLCLFIAWMLPDRLAD 309
BLAST of NO12G00620 vs. NCBI_GenBank
Match: EWM24343.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 180.6 bits (457), Expect = 8.200e-42 Identity = 121/338 (35.80%), Postives = 182/338 (53.85%), Query Frame = 0 Query: 11 TLLQTGLILLLFLVVRQVLAWKGRKHF--PPLTCGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALREIGVPGIHPVILDVAKLDSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDATVEFHDMDMMRHMFDVNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPRYGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPELQQQQQQSHVKNDTSVSPAAKKAYPFFYTQKFEKKNAGPMENGSDPVVVCQAMHHALTSAYPKTRYPVAKINRAKVALVFLVRQLLPDRVFDKSFL 347 T+L+ LI LL ++ +L + R+ + PP +V+L+G S+GIG AAV+LA F V AGVRKE DA+ LR +G + PVILDV DS+ + + + + + I P+ ++NNAG++ +TVE HD+ M+ ++DVN +G++ ++ FLPLLR + GR++ I S+AG ++ PR Y +SKHA+E+++D LR EL VSV+++QPG R+ +F E Q Q+ + D P K Y E M P +A+ AL YPKTR VA I+ ++ +LPDRV DK L Sbjct: 92 TMLKIFLIGLLLSLIPLLLNYASRREYPTPPSGGAAVVLSGASTGIGYDAAVHLAD-DFVVYAGVRKEKDAEMLRSVGKSTLVPVILDVTSQDSIDEAYVKITADAAERGI-PVWGLVNNAGIMTASTVEHHDVAGMQKIYDVNVWGVLRLTQKFLPLLRAQA------------GRIVQISSIAGFLTIPRASGYCSSKHALESLSDGLRLELAHYNVSVTVVQPGAVRSAIF-------EKSQSASQAKLAED----PRELKVYGHMIK---EGSTDSIMAKADTPDCTTKAIRQALMDRYPKTREVVANIDGLPAIFAHYMKHMLPDRVLDKMLL 401
BLAST of NO12G00620 vs. NCBI_GenBank
Match: EWM25314.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 179.9 bits (455), Expect = 1.400e-41 Identity = 108/310 (34.84%), Postives = 168/310 (54.19%), Query Frame = 0 Query: 34 RKHFP-PLTCGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALREIGVPGIHPVILDVAKLDSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDATVEFHDMDMMRHMFDVNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPRYGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPELQQQQQQSHVKNDTSVSPAAKKAYPFFYTQKFEKKNAGPMENGSDPVVVCQAMHHALTSAYPKTRYPVAKINRAKVALVFLVRQLLPDRVFD 343 RK FP P G++++TG S+GIG AA +LA++G+ V VRK +D +A++ +G+P + P+I+DVA+ S++ +L+ LS I PL+ ++NNAG+ Q +EFH + +R MFD++ G + ++ LP +R KGR++N+ S+ V P AY ASK AVE I+D LR EL SVS++QP + T +F ++ + VSP Y +F+ + K+ ++ S P V A+ HALTS YP TRY VA ++ + + L PDR+ D Sbjct: 38 RKRFPVPPKGGAIVITGASTGIGNHAAQHLARQGYIVYCTVRKPADVEAIQALGLPNLRPIIMDVAQAKSIENGAETILAELSKNNI-PLIGLVNNAGVAQKFPLEFHPLTDLRSMFDIHVIGPLELTQRLLPAIRA------------NKGRIVNLSSITALVLLPTGAAYGASKLAVEGISDGLRRELVDFDCSVSIVQPAYVNTAIF-----------KKVTQSIDTKVEVSPEIMTTYGYFFRTEKRIKDRAAVDKASPPSVTTDAITHALTSPYPHTRYIVANVSGIPAFWLGWLVWLCPDRLAD 323
BLAST of NO12G00620 vs. NCBI_GenBank
Match: XP_005855590.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >EKU20782.1 short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 178.7 bits (452), Expect = 3.100e-41 Identity = 120/337 (35.61%), Postives = 181/337 (53.71%), Query Frame = 0 Query: 12 LLQTGLILLLFLVVRQVLAWKGRKHF--PPLTCGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALREIGVPGIHPVILDVAKLDSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDATVEFHDMDMMRHMFDVNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPRYGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPELQQQQQQSHVKNDTSVSPAAKKAYPFFYTQKFEKKNAGPMENGSDPVVVCQAMHHALTSAYPKTRYPVAKINRAKVALVFLVRQLLPDRVFDKSFL 347 +L+ LI LL ++ +L + R+ + PP +V+L+G S+GIG AAV+LA F V AGVRKE DA+ LR +G + PVILDV DS+ + + + + + I P+ ++NNAG++ +TVE HD+ M+ ++DVN +G++ ++ FLPLLR + GR++ I S+AG ++ PR Y +SKHA+E+++D LR EL VSV+++QPG R+ +F E Q Q+ + D P K Y E M P +A+ AL YPKTR VA I+ ++ +LPDRV DK L Sbjct: 1 MLKIFLIGLLLSLIPLLLNYASRREYPTPPSGGAAVVLSGASTGIGYDAAVHLAD-DFVVYAGVRKEKDAEMLRSVGKSTLVPVILDVTSQDSIDEAYVKITADAAERGI-PVWGLVNNAGIMTASTVEHHDVAGMQKIYDVNVWGVLRLTQKFLPLLRAQA------------GRIVQISSIAGFLTIPRASGYCSSKHALESLSDGLRLELAHYNVSVTVVQPGAVRSAIF-------EKSQSASQAKLAED----PRELKVYGHMIK---EGSTDSIMAKADTPDCTTKAIRQALMDRYPKTREVVANIDGLPAIFAHYMKHMLPDRVLDKMLL 309
BLAST of NO12G00620 vs. NCBI_GenBank
Match: WP_099702301.1 (SDR family NAD(P)-dependent oxidoreductase [Chroococcales cyanobacterium IPPAS B-1203] >PIG92262.1 short-chain dehydrogenase/reductase [Chroococcales cyanobacterium IPPAS B-1203]) HSP 1 Score: 177.6 bits (449), Expect = 6.900e-41 Identity = 115/306 (37.58%), Postives = 170/306 (55.56%), Query Frame = 0 Query: 40 LTCGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALREIGVPGIHPVILDVAKLDSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDATVEFHDMDMMRHMFDVNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPRYGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPELQQQQ--QQSHVKNDTSVSPAAKKAYPFFYTQKFEKKNAGPMENGSDPVVVCQAMHHALTSAYPKTRYPVAKINRAKVALVFLVRQLLPDRVFDK 344 +T G+V++TG S+GIG A+ L Q GF V AGVRKE+DAQAL++ P + P+ LDV+ LDS+ A +V + L+ ++NNAG+ A +EF + R +VN + V+ FLPLLR A +GR++N+GS+ G+ + P GAY+ASK A+EA+TD LR EL P G+ V++I+PG T ++ + +AQ ++ QQ +H ++ A+K A A + G P V QA+ ALT+ PKTRY V + R + L F LPDR+ D+ Sbjct: 4 VTKGAVVITGASTGIGAACAIRLDQLGFQVFAGVRKEADAQALQQTASPKLTPIFLDVSDLDSIAASVENVAIAVENSA---LIGLVNNAGIAVAAPLEFIPITEFRRQLEVNTTAQLAVTQAFLPLLRSA------------RGRIVNMGSITGRSATPFLGAYSASKFALEALTDALRLELRPWGIWVAIIEPGAIATPIWQKSLAQADILQQNLPYSAHELYGRAMDTASKGA-------------ANLAQKGISPDQVAQAVVRALTAKRPKTRYLVGQDARIRAMLKF-----LPDRIVDE 276
BLAST of NO12G00620 vs. NCBI_GenBank
Match: XP_005855521.1 (1-acylglycerone phosphate reductase, partial [Nannochloropsis gaditana CCMP526] >EKU20840.1 1-acylglycerone phosphate reductase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 176.4 bits (446), Expect = 1.500e-40 Identity = 103/290 (35.52%), Postives = 160/290 (55.17%), Query Frame = 0 Query: 34 RKHFP-PLTCGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALREIGVPGIHPVILDVAKLDSVQACHAHVLSLLSTKTIPPLMAVINNAGLLQDATVEFHDMDMMRHMFDVNYFGLVTVSSVFLPLLRGASSSSSSTSASFPKGRLINIGSVAGKVSFPRYGAYAASKHAVEAITDTLRAELTPAGVSVSLIQPGFCRTELFVRGVAQPELQQQQQQSHVKNDTSVSPAAKKAYPFFYTQKFEKKNAGPMENGSDPVVVCQAMHHALTSAYPKTRYPVAKIN 323 RK FP P G++++TG S+GIG AA +LA++G+ V VRK +D +A++ +G+P + P+I+DVA+ S++ +L+ LS I PL+ ++NNAG+ Q +EFH + +R MFD++ G + ++ LP +R KGR++N+ S+ V P AY ASK AVE I+D LR EL SVS++QP + T +F ++ + VSP Y +F+ + K+ ++ S P V A+ HALTS YP TRY VA ++ Sbjct: 46 RKRFPVPPKGGAIVITGASTGIGNHAAQHLARQGYIVYCTVRKPADVEAIQALGLPNLRPIIMDVAQAKSIENGAETILAELSKNNI-PLIGLVNNAGVAQKFPLEFHPLTDLRSMFDIHVIGPLELTQRLLPAIRA------------NKGRIVNLSSITALVLLPTGAAYGASKLAVEGISDGLRRELVDFDCSVSIVQPAYVNTAIF-----------KKVTQSIDTKVEVSPEIMTTYGYFFRTEKRIKDRAAVDKASPPSVTTDAITHALTSPYPHTRYIVANVS 311 The following BLAST results are available for this feature:
BLAST of NO12G00620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G00620 ID=NO12G00620|Name=NO12G00620|organism=Nannochloropsis oceanica|type=gene|length=1382bpback to top protein sequence of NO12G00620.1 >NO12G00620.1-protein ID=NO12G00620.1-protein|Name=NO12G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=350bpback to top Synonyms
Publications
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