NO12G00580, NO12G00580 (gene) Nannochloropsis oceanica

Overview
NameNO12G00580
Unique NameNO12G00580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1097
Alignment locationchr12:214431..215527 -

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Properties
Property NameValue
DescriptionS-adenosylmethionine decarboxylase proenzyme
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:214431..215527 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008295spermidine biosynthetic process
GO:0008295spermidine biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004014adenosylmethionine decarboxylase activity
GO:0004014adenosylmethionine decarboxylase activity
Vocabulary: INTERPRO
TermDefinition
IPR016067S-AdoMet_deCO2ase_core
IPR003826AdoMetDC_fam_prok
Homology
BLAST of NO12G00580 vs. NCBI_GenBank
Match: XP_005856029.1 (s-adenosylmethionine decarboxylase proenzyme [Nannochloropsis gaditana CCMP526] >EKU20322.1 s-adenosylmethionine decarboxylase proenzyme [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 224.2 bits (570), Expect = 4.400e-55
Identity = 117/189 (61.90%), Postives = 141/189 (74.60%), Query Frame = 0
Query:    2 KSISRHAVSDNYDAGGHSSSSTSGQDQLKAHGHHITLDYTSFFVDARDGAALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSAHCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRFLHVDMDMEGEGGGRREEGEGGPLVLDRWMAVEDETSYYNN 191
            +SI+   V+ N D       STS    +KAHG H+TLDYTSFFVDA+DGA +T++L+RAAV+EAGVREVHSH+ VLG+DGLSPPGFTGICLIDESHVSAHCYSE+GWLALDVFTCG TDPA IA  LH+RLT AVPGL ++R M  DRFLH+DM    +GG   E+ E   + +DR +   DE  +  N
Sbjct:   70 ESIASCDVNGNVDV-----PSTSNDGVIKAHGRHLTLDYTSFFVDAQDGATMTLALVRAAVREAGVREVHSHVVVLGDDGLSPPGFTGICLIDESHVSAHCYSEKGWLALDVFTCGPTDPAEIADKLHQRLTDAVPGLHLVRRMAHDRFLHLDM---AQGGS--EDREQTRVNVDRKLDGFDEALFGAN 248          
BLAST of NO12G00580 vs. NCBI_GenBank
Match: AIF01373.1 (S-adenosylmethionine decarboxylase [uncultured marine group II/III euryarchaeote KM3_146_G03])

HSP 1 Score: 139.4 bits (350), Expect = 1.400e-29
Identity = 67/139 (48.20%), Postives = 90/139 (64.75%), Query Frame = 0
Query:   23 TSGQDQLKAHGHHITLDYTSFFVDARDGAALTMSLIRAAVKEAGVREVHSHMEVLGEDGL-SPPGFTGICLIDESHVSAHCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRFLHVDMDMEGE 161
            T G D+  AHG H+ LDY +F  +  D     +SL+R++V E GV+EVH+H EV   DG+ SPPGF  I LIDESHV+AHCYSE+GWLA+D FTCG  DP  +   +H +L A    L+++    ++RFLH D+    E
Sbjct:    6 TDGLDERFAHGRHVYLDYVNFNPEVEDIDTWVLSLLRSSVSECGVKEVHAHCEVF--DGVESPPGFAAIVLIDESHVTAHCYSEKGWLAIDAFTCGTHDPNDLVDVIHAKLIAGCENLKLMNRNIVERFLHDDLSQNKE 142          
BLAST of NO12G00580 vs. NCBI_GenBank
Match: XP_005767727.1 (hypothetical protein EMIHUDRAFT_211444 [Emiliania huxleyi CCMP1516] >XP_005774388.1 hypothetical protein EMIHUDRAFT_240722 [Emiliania huxleyi CCMP1516] >EOD15298.1 hypothetical protein EMIHUDRAFT_211444 [Emiliania huxleyi CCMP1516] >EOD21959.1 hypothetical protein EMIHUDRAFT_240722 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 131.0 bits (328), Expect = 5.100e-27
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = 0
Query:   29 LKAHGHHITLDYTSFFVDARDGAALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSAHCYSERGWLALDVFTCG-KTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRFLHVDMDME 159
            L AHG H+ LD+  F V+       T++ + AA    G   VHS + +LGEDG +PPGFT   L+DESH +AHCYSE GWLA+DVFTCG + D    A  + +++   VPG+R  +  ++DRFLH ++++E
Sbjct:   28 LAAHGSHVVLDFEGFAVEPAAAGRWTLATLEAAAAAHGATVVHSKLVLLGEDGTTPPGFTAAVLLDESHATAHCYSEHGWLAVDVFTCGAQADTLGFADAVRRKVEGYVPGVRCTQHASIDRFLHRELELE 158          
BLAST of NO12G00580 vs. NCBI_GenBank
Match: AIF20807.1 (S-adenosylmethionine decarboxylase [uncultured marine group II/III euryarchaeote KM3_94_C01])

HSP 1 Score: 129.0 bits (323), Expect = 1.900e-26
Identity = 59/122 (48.36%), Postives = 83/122 (68.03%), Query Frame = 0
Query:   33 GHHITLDYTSFFVDARDGAALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSAHCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRFLHVD 155
            G H+TLDY  +     + A   ++L+  A  +AG REVH+H E   +  +SPPGF  + L+DESHVSAHCYSERG LA+D FTCG  DP  I  +LH+ LT ++PG++++R  +L+RFL+ D
Sbjct:   19 GKHVTLDYIGYVSPNGNDAEWMLALLSEAAAKAGAREVHAHAESF-DGSVSPPGFAAVVLLDESHVSAHCYSERGLLAIDAFTCGDADPNQITDHLHEVLTKSIPGIKLVRKDSLNRFLNGD 139          
BLAST of NO12G00580 vs. NCBI_GenBank
Match: OUV16971.1 (hypothetical protein CBC59_03730 [Euryarchaeota archaeon TMED99])

HSP 1 Score: 128.3 bits (321), Expect = 3.300e-26
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 0
Query:   29 LKAHGHHITLDYTSFFVDARDGAALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSAHCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRFLH 153
            L+AHG H+ LDYT +    ++     + L+  AV+ +  R VHSH+E   +  LSP GF  + L+DESHV+AHCYSE+GWLALD FTCG +DP  +A ++H +L   +P L + R  +++RFLH
Sbjct:    4 LEAHGAHVFLDYTGYVPPHQNDGQWILELLEQAVERSTARNVHSHVEPF-DGSLSPIGFAAVVLLDESHVTAHCYSEKGWLALDCFTCGGSDPNALADDIHHQLVKEIPSLSLRRRQHVERFLH 126          
BLAST of NO12G00580 vs. NCBI_GenBank
Match: AIF02979.1 (S-adenosylmethionine decarboxylase proenzyme (speD) [uncultured marine group II/III euryarchaeote KM3_15_H06])

HSP 1 Score: 127.1 bits (318), Expect = 7.300e-26
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 0
Query:   33 GHHITLDYTSFFVDARDGAALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSAHCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRFLH 153
            G H+TLDY  +     + A   + L+R A  +AG REVH+H E   +  +SPPGF  + L+DESHVSAHCYSERG LA+D FTCG+TDP  I  +LH  L  A+P ++++R  +L RFL+
Sbjct:    4 GKHVTLDYVGYVSPNGNDAEWMLELLREAAAKAGAREVHAHAEPF-DGSVSPPGFAAVVLLDESHVSAHCYSERGLLAIDAFTCGETDPNQITDHLHAVLIEAIPEIKLVRKDSLKRFLN 122          
BLAST of NO12G00580 vs. NCBI_GenBank
Match: AIF03972.1 (deoxyhypusine synthase family protein (dys1) [uncultured marine group II/III euryarchaeote KM3_16_D12])

HSP 1 Score: 127.1 bits (318), Expect = 7.300e-26
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 0
Query:   33 GHHITLDYTSFFVDARDGAALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSAHCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRFLH 153
            G H+TLDY  +     + A   + L+R A  +AG REVH+H E   +  +SPPGF  + L+DESHVSAHCYSERG LA+D FTCG+TDP  I  +LH  L  A+P ++++R  +L RFL+
Sbjct:    4 GKHVTLDYVGYVSPNGNDAEWMLELLREAAAKAGAREVHAHAEPF-DGSVSPPGFAAVVLLDESHVSAHCYSERGLLAIDAFTCGETDPNQITDHLHAVLIEAIPEIKLVRKDSLKRFLN 122          
BLAST of NO12G00580 vs. NCBI_GenBank
Match: AIE92712.1 (S-adenosylmethionine decarboxylase [uncultured marine group II/III euryarchaeote AD1000_26_F08])

HSP 1 Score: 125.6 bits (314), Expect = 2.100e-25
Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 0
Query:   31 AHGHHITLDYTSFFVDARDGAALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSAHCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRF 151
            A G H+ LDYT +     +  A  + ++R  V  AG+REVH+H+    + G SPPGF  + LIDESHVSAHCYSE G LA+D+FTCG +DP  +A ++H  +  AVPGL +     LDRF
Sbjct:    6 ARGGHVVLDYTGYSPPVDEDGAWMLQVLRDCVNRAGIREVHAHVAQF-DGGESPPGFAAVVLIDESHVSAHCYSESGLLAIDIFTCGDSDPGSLADDIHSMVVEAVPGLELSGRERLDRF 124          
BLAST of NO12G00580 vs. NCBI_GenBank
Match: AIE94638.1 (S-adenosylmethionine decarboxylase [uncultured marine group II/III euryarchaeote AD1000_49_G12])

HSP 1 Score: 125.6 bits (314), Expect = 2.100e-25
Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 0
Query:   31 AHGHHITLDYTSFFVDARDGAALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSAHCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRF 151
            A G H+ LDYT +     +  A  + ++R  V  AG+REVH+H+    + G SPPGF  + LIDESHVSAHCYSE G LA+D+FTCG +DP  +A ++H  +  AVPGL +     LDRF
Sbjct:    6 ARGGHVVLDYTGYSPPVDEDGAWMLQVLRDCVNRAGIREVHAHVAQF-DGGESPPGFAAVVLIDESHVSAHCYSESGLLAIDIFTCGDSDPGPLADDIHSMVVEAVPGLELSGRERLDRF 124          
BLAST of NO12G00580 vs. NCBI_GenBank
Match: AIF15743.1 (S-adenosylmethionine decarboxylase [uncultured marine group II/III euryarchaeote KM3_71_C12])

HSP 1 Score: 125.2 bits (313), Expect = 2.800e-25
Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 0
Query:   31 AHGHHITLDYTSFFVDARDGAALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSAHCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRF 151
            A G H+ LDYT +     +  A  + ++R  V  AG+REVH+H+    + G SPPGF  + LIDESHVSAHCYSE G LA+D+FTCG +DP  +A  +H  +  AVPGL +     LDRF
Sbjct:   23 ARGGHVVLDYTGYSPPVDEDGAWMLQVLRDCVNRAGIREVHAHVAQF-DGGESPPGFAAVVLIDESHVSAHCYSESGLLAIDIFTCGDSDPGPLADEIHSMVVEAVPGLELSGRERLDRF 141          
The following BLAST results are available for this feature:
BLAST of NO12G00580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856029.14.400e-5561.90s-adenosylmethionine decarboxylase proenzyme [Nann... [more]
AIF01373.11.400e-2948.20S-adenosylmethionine decarboxylase [uncultured mar... [more]
XP_005767727.15.100e-2745.04hypothetical protein EMIHUDRAFT_211444 [Emiliania ... [more]
AIF20807.11.900e-2648.36S-adenosylmethionine decarboxylase [uncultured mar... [more]
OUV16971.13.300e-2645.97hypothetical protein CBC59_03730 [Euryarchaeota ar... [more]
AIF02979.17.300e-2649.17S-adenosylmethionine decarboxylase proenzyme (speD... [more]
AIF03972.17.300e-2649.17deoxyhypusine synthase family protein (dys1) [uncu... [more]
AIE92712.12.100e-2548.33S-adenosylmethionine decarboxylase [uncultured mar... [more]
AIE94638.12.100e-2548.33S-adenosylmethionine decarboxylase [uncultured mar... [more]
AIF15743.12.800e-2548.33S-adenosylmethionine decarboxylase [uncultured mar... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL128nonsL128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR011ngnoR011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009957NSK009957Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00580.1NO12G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|324155gene_9971Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00580.1NO12G00580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00580 ID=NO12G00580|Name=NO12G00580|organism=Nannochloropsis oceanica|type=gene|length=1097bp
ATGAAAAGCATTTCTCGCCATGCCGTGTCTGACAATTACGATGCAGGAGG
CCACAGgtaaattgtcactccctccctccctccctccttgcatccttaat
tgctctcccctttttccttcccataaacctaatcccgtcaagtaggccga
ctattcttagctccttctccagctctttccgcgtatatccccgtatcttt
gcgtcaatcttattctctcttcccacatattcctctctccttcctttccc
tcctcatactctcctgacacccggctttcgcagCAGCAGCAGCACTAGCG
GCCAAGACCAGCTTAAAGCCCACGGCCATCATATAACTTTGGACTACACG
TCCTTTTTCGTCGATGCTCGCGACGGCGCCGCCCTGACCATGTCCCTCAT
CCGTGCCGCGGTCAAGGAGGCGGGGGTCCGTGAAGTGCATTCACACATGG
AGGTGTTGGGGGAGGATGGATTGAGTCCTCCGGGTTTCACAGgtgtgcgg
agaaggagaaagaaagggagggagggaagggggggggggagggagggaag
gagggcgggaagcagttctggtcggggatggctcagcactttcatcataa
atatctcatcccatcctccctccctccctccttccctccctccagGCATC
TGTCTCATCGACGAAAGCCATGTGTCCGCACATTGCTATTCCGAACGAGG
CTGGCTAGCTCTGGACGTCTTCACCTGTGGCAAGACTGATCCTGCTGTAA
TCGCGGGAAACCTACACAAACGACTGACGGCCGCCGTACCCGGATTACGG
ATGATTAGGGGGATGAATTTGGATAGATTCTTGCACGTGGATATGGATAT
GGAAGGGGAAGGGGGAGGTAGGAGGGAGGAAGGGGAGGGAGGGCCGTTGG
TTTTGGACCGGTGGATGGCAGTGGAGGATGAGACGAGTTATTACAATAAT
GCGGATAAACACCGATGGGGGAGGCAGGGAGGAGAGGCAGGGGGGGGAAG
GTTTGCAGAGGAGGGGAGGGAGGAAGGGGAGGAGGAGCAGAAGGACGGGA
GGATGACGAGGGAAAAGAAGGAGGAGAAGGAAGGGATTGATCGATGA
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protein sequence of NO12G00580.1

>NO12G00580.1-protein ID=NO12G00580.1-protein|Name=NO12G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MKSISRHAVSDNYDAGGHSSSSTSGQDQLKAHGHHITLDYTSFFVDARDG
AALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSA
HCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRF
LHVDMDMEGEGGGRREEGEGGPLVLDRWMAVEDETSYYNNADKHRWGRQG
GEAGGGRFAEEGREEGEEEQKDGRMTREKKEEKEGIDR*
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Synonyms
Publications