NO12G00490, NO12G00490 (gene) Nannochloropsis oceanica

Overview
NameNO12G00490
Unique NameNO12G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2555
Alignment locationchr12:177289..179843 -

Link to JBrowse

Properties
Property NameValue
DescriptionAtp-dependent rna helicase ddx42
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:177289..179843 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO12G00490 vs. NCBI_GenBank
Match: EWM25970.1 (atp-dependent rna helicase ddx42, partial [Nannochloropsis gaditana])

HSP 1 Score: 808.9 bits (2088), Expect = 1.500e-230
Identity = 485/719 (67.45%), Postives = 543/719 (75.52%), Query Frame = 0
Query:    1 MNFRRPGGQTYRPPATASANISSNSTAALASKAGSSAEADYLAKARQKAKGLKGWFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATVPGPTSVMSTPLSSGEEKE--VDPLDAFMAGVQNKVQEEAQKPSQAPWDKPEYLDEEAAEEDENAREEGTFSDDEGGDYMRRRVAGEDDYNYDSDAEVYAAXXXXXXXXXXXXXXXXXXXXXXGLEPGKKYSRMGPEGKKAMEVLPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTRELASQIYVEATKFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGRLLELLKTKATNLKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLLFSATFKRKVEKLANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQWLAHCLPGLVREGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKVEALHGDKDQHERSLIXXXXXXXXXXXXXXXXXXXXXXXGACRVLVATDVASRGLDIKDIRNVINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLTPRDSGMAGEMVKGLEGARQKVPAALRAM 718
            MNFRRPGGQ YRP  T+S   + N  A+    +GS+A A    +A Q+++ +K WFD   XXXXXXXXXXXXXXXXXXXXXX                       GA      +V STP   G EKE        FM GVQ+KV+EEA+  ++A  +KP +LDE A                    Y+ RR  GEDD +YDSDAEVYAA                      GL PGK YSR+GPEGKKAME LPPLDHAS+ YPPFRKCFY E P+VT MDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSE LLREI+KRGF+APTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPA+VHLMDQP + +G+GPIVLILAPTRELASQIYVEA KF+KPHGA+ AA+FGGAGKWEQ+KLLK GVEIL+ATPGRLLE LK KATNL RCT LVLDEADRMFDLGFE+Q+HSVLGQIRPDRQ+L+FSATFKRKVE LA +VL+DP+R+VCG+AGQANEDV QEVVV+P EE K +WL      LV  GKVLVFVSSKQGCED+AGRL  +L      SS   W+VE LHGDKDQ ERSLI         XXXXXXXXXXXXXX  CRVLVATDVASRGLDIKD+RNV+N+DMAR+MEAHVHRCGRTGRM+VEGGREGG A+TLLTP+D+GMAGE+VKGLEGARQ+VP ALRAM
Sbjct:    1 MNFRRPGGQAYRP--TSSNRNAGNPFASKNDPSGSNAGAGSTVRASQQSQSVKDWFD--DXXXXXXXXXXXXXXXXXXXXXXEEEEDPIDAFIKEQQGSCHQGKNGALNDSSKAVSSTP---GPEKEXXXXXXXXFMVGVQSKVEEEARHTTEAGVEKPVFLDETAXXXXXXXXXXXXXXXXXXXGYISRRRPGEDDADYDSDAEVYAA----GAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMR-REGSSAGGWEVETLHGDKDQSERSLI-MRRFKRQEXXXXXXXXXXXXXXXXCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAM 706          
BLAST of NO12G00490 vs. NCBI_GenBank
Match: ETI45761.1 (hypothetical protein F443_09746 [Phytophthora parasitica P1569])

HSP 1 Score: 474.6 bits (1220), Expect = 6.600e-130
Identity = 271/597 (45.39%), Postives = 372/597 (62.31%), Query Frame = 0
Query:  124 EEKEVDPLDAFMAGVQNKVQEEAQKPSQAPWDKPEYLDEEAAEEDENAREEGTFSDDEGGDYMRRRVA---GEDDYNYDSDAEVYAAXXXXXXXXXXXXXXXXXXXXXXGLEPGKKYSRMGPEGKKAMEVLPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTRELASQIYVEATKFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGRLLELLKTKATNLKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLLFSATFKRKVEKLANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQWLAHCLPGLVREGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKVEALHGDKDQHERSLIXXXXXXXXXXXXXXXXXXXXXXXGACRVLVATDVASRGLDIKDIRNVINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLTPRDSGMAGEMVKGLEGARQKVPAALRAM 718
            ++ EVDPLDAFM G+  +V+++   P +   DKP+ L+    + D       +F ++      + RV    G+D    DSD EVYA                        L+       M    KK MEVL P+DH+ + Y PFRK FY    + + ++ +E+   R  EL ++VEG +   P+ SF H  GF + +L+ ++K G EAPT IQAQA P+AL+GRD++GIA+TGSGKTLAF  P + H+MDQ  +QRG+GPI ++LAPTRELA Q YV+A KF   +GA  AAI+GGAGKWEQ + LK+GVE++VATPGRL+E+++ KA  + R T +VLDEADRMF++GFE QL SV+GQ+RPDRQTL+FSATF++++E LA +VL +PV++  G+ GQANED+ Q  VVLP   AK+ WL   +  LV EG++L+F  SK GCE+LA  L +         + P      LHGDK Q ER+                         G CRVLVATDVA+RGLD+KD++NV+NFD+A+N++ HVHR GRTGRM  E G E G A+TL+T  +S  A ++V  ++ + Q V A L A+
Sbjct:   42 DDDEVDPLDAFMQGIDTEVKQQRTAPPKLVADKPQVLNHVDDDAD-------SFLEEYARTTKKPRVGLNLGDD----DSDEEVYATAKQ--------------------LDDADAPDDM---AKKVMEVLTPVDHSIMTYEPFRKNFYAPRSETSALNAQEVASIR-SELNIRVEGADVPAPVRSFMH-LGFDKKMLQTLMKLGLEAPTAIQAQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRELQRGEGPIAIVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQALKKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQTLMFSATFRKRIEALALDVLTNPVKLTIGQVGQANEDIRQIAVVLPGHGAKWPWLMSKIRALVDEGRLLIFAGSKAGCEELAKNLAV---------AFPVAPALCLHGDKTQKERA-----------------EALMKFKHGECRVLVATDVAARGLDVKDVKNVVNFDVAKNIDTHVHRIGRTGRMGQE-GFEPGTAYTLVTRNESQFAAQLVYNMDVSGQPVSAELLAL 575          
BLAST of NO12G00490 vs. NCBI_GenBank
Match: ETK85710.1 (hypothetical protein L915_09551 [Phytophthora parasitica] >ETL39140.1 hypothetical protein L916_09452 [Phytophthora parasitica] >ETO74411.1 hypothetical protein F444_09843 [Phytophthora parasitica P1976] >ETP15584.1 hypothetical protein F441_09686 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 474.6 bits (1220), Expect = 6.600e-130
Identity = 271/597 (45.39%), Postives = 372/597 (62.31%), Query Frame = 0
Query:  124 EEKEVDPLDAFMAGVQNKVQEEAQKPSQAPWDKPEYLDEEAAEEDENAREEGTFSDDEGGDYMRRRVA---GEDDYNYDSDAEVYAAXXXXXXXXXXXXXXXXXXXXXXGLEPGKKYSRMGPEGKKAMEVLPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTRELASQIYVEATKFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGRLLELLKTKATNLKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLLFSATFKRKVEKLANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQWLAHCLPGLVREGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKVEALHGDKDQHERSLIXXXXXXXXXXXXXXXXXXXXXXXGACRVLVATDVASRGLDIKDIRNVINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLTPRDSGMAGEMVKGLEGARQKVPAALRAM 718
            ++ EVDPLDAFM G+  +V+++   P +   DKP+ L+    + D       +F ++      + RV    G+D    DSD EVYA                        L+       M    KK MEVL P+DH+ + Y PFRK FY    + + ++ +E+   R  EL ++VEG +   P+ SF H  GF + +L+ ++K G EAPT IQAQA P+AL+GRD++GIA+TGSGKTLAF  P + H+MDQ  +QRG+GPI ++LAPTRELA Q YV+A KF   +GA  AAI+GGAGKWEQ + LK+GVE++VATPGRL+E+++ KA  + R T +VLDEADRMF++GFE QL SV+GQ+RPDRQTL+FSATF++++E LA +VL +PV++  G+ GQANED+ Q  VVLP   AK+ WL   +  LV EG++L+F  SK GCE+LA  L +         + P      LHGDK Q ER+                         G CRVLVATDVA+RGLD+KD++NV+NFD+A+N++ HVHR GRTGRM  E G E G A+TL+T  +S  A ++V  ++ + Q V A L A+
Sbjct:   42 DDDEVDPLDAFMQGIDTEVKQQRTAPPKLVADKPQVLNHVDDDAD-------SFLEEYARTTKKPRVGLNLGDD----DSDEEVYATAKQ--------------------LDDADAPDDM---AKKVMEVLTPVDHSIMTYEPFRKNFYAPRSETSALNAQEVASIR-SELNIRVEGADVPAPVRSFMH-LGFDKKMLQTLMKLGLEAPTAIQAQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRELQRGEGPIAIVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQALKKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQTLMFSATFRKRIEALALDVLTNPVKLTIGQVGQANEDIRQIAVVLPGHGAKWPWLMSKIRALVDEGRLLIFAGSKAGCEELAKNLAV---------AFPVAPALCLHGDKTQKERA-----------------EALMKFKHGECRVLVATDVAARGLDVKDVKNVVNFDVAKNIDTHVHRIGRTGRMGQE-GFEPGTAYTLVTRNESQFAAQLVYNMDVSGQPVSAELLAL 575          
BLAST of NO12G00490 vs. NCBI_GenBank
Match: ETM45575.1 (hypothetical protein L914_09420 [Phytophthora parasitica])

HSP 1 Score: 474.6 bits (1220), Expect = 6.600e-130
Identity = 271/597 (45.39%), Postives = 372/597 (62.31%), Query Frame = 0
Query:  124 EEKEVDPLDAFMAGVQNKVQEEAQKPSQAPWDKPEYLDEEAAEEDENAREEGTFSDDEGGDYMRRRVA---GEDDYNYDSDAEVYAAXXXXXXXXXXXXXXXXXXXXXXGLEPGKKYSRMGPEGKKAMEVLPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTRELASQIYVEATKFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGRLLELLKTKATNLKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLLFSATFKRKVEKLANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQWLAHCLPGLVREGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKVEALHGDKDQHERSLIXXXXXXXXXXXXXXXXXXXXXXXGACRVLVATDVASRGLDIKDIRNVINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLTPRDSGMAGEMVKGLEGARQKVPAALRAM 718
            ++ EVDPLDAFM G+  +V+++   P +   DKP+ L+    + D       +F ++      + RV    G+D    DSD EVYA                        L+       M    KK MEVL P+DH+ + Y PFRK FY    + + ++ +E+   R  EL ++VEG +   P+ SF H  GF + +L+ ++K G EAPT IQAQA P+AL+GRD++GIA+TGSGKTLAF  P + H+MDQ  +QRG+GPI ++LAPTRELA Q YV+A KF   +GA  AAI+GGAGKWEQ + LK+GVE++VATPGRL+E+++ KA  + R T +VLDEADRMF++GFE QL SV+GQ+RPDRQTL+FSATF++++E LA +VL +PV++  G+ GQANED+ Q  VVLP   AK+ WL   +  LV EG++L+F  SK GCE+LA  L +         + P      LHGDK Q ER+                         G CRVLVATDVA+RGLD+KD++NV+NFD+A+N++ HVHR GRTGRM  E G E G A+TL+T  +S  A ++V  ++ + Q V A L A+
Sbjct:   42 DDDEVDPLDAFMQGIDTEVKQQRTAPPKLVADKPQVLNHVDDDAD-------SFLEEYARTTKKPRVGLNLGDD----DSDEEVYATAKQ--------------------LDDADAPDDM---AKKVMEVLTPVDHSIMTYEPFRKNFYAPRSETSALNAQEVASIR-SELNIRVEGADVPAPVRSFMH-LGFDKKMLQTLMKLGLEAPTAIQAQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRELQRGEGPIAIVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQALKKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQTLMFSATFRKRIEALALDVLTNPVKLTIGQVGQANEDIRQIAVVLPGHGAKWPWLMSKIRALVDEGRLLIFAGSKAGCEELAKNLAV---------AFPVAPALCLHGDKTQKERA-----------------EALMKFKHGECRVLVATDVAARGLDVKDVKNVVNFDVAKNIDTHVHRIGRTGRMGQE-GFEPGTAYTLVTRNESQFAAQLVYNMDVSGQPVSAELLAL 575          
BLAST of NO12G00490 vs. NCBI_GenBank
Match: ETP43648.1 (hypothetical protein F442_09647 [Phytophthora parasitica P10297])

HSP 1 Score: 474.6 bits (1220), Expect = 6.600e-130
Identity = 271/597 (45.39%), Postives = 372/597 (62.31%), Query Frame = 0
Query:  124 EEKEVDPLDAFMAGVQNKVQEEAQKPSQAPWDKPEYLDEEAAEEDENAREEGTFSDDEGGDYMRRRVA---GEDDYNYDSDAEVYAAXXXXXXXXXXXXXXXXXXXXXXGLEPGKKYSRMGPEGKKAMEVLPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTRELASQIYVEATKFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGRLLELLKTKATNLKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLLFSATFKRKVEKLANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQWLAHCLPGLVREGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKVEALHGDKDQHERSLIXXXXXXXXXXXXXXXXXXXXXXXGACRVLVATDVASRGLDIKDIRNVINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLTPRDSGMAGEMVKGLEGARQKVPAALRAM 718
            ++ EVDPLDAFM G+  +V+++   P +   DKP+ L+    + D       +F ++      + RV    G+D    DSD EVYA                        L+       M    KK MEVL P+DH+ + Y PFRK FY    + + ++ +E+   R  EL ++VEG +   P+ SF H  GF + +L+ ++K G EAPT IQAQA P+AL+GRD++GIA+TGSGKTLAF  P + H+MDQ  +QRG+GPI ++LAPTRELA Q YV+A KF   +GA  AAI+GGAGKWEQ + LK+GVE++VATPGRL+E+++ KA  + R T +VLDEADRMF++GFE QL SV+GQ+RPDRQTL+FSATF++++E LA +VL +PV++  G+ GQANED+ Q  VVLP   AK+ WL   +  LV EG++L+F  SK GCE+LA  L +         + P      LHGDK Q ER+                         G CRVLVATDVA+RGLD+KD++NV+NFD+A+N++ HVHR GRTGRM  E G E G A+TL+T  +S  A ++V  ++ + Q V A L A+
Sbjct:   42 DDDEVDPLDAFMQGIDTEVKQQRTAPPKLVADKPQVLNHVDDDAD-------SFLEEYARTTKKPRVGLNLGDD----DSDEEVYATAKQ--------------------LDDADAPDDM---AKKVMEVLTPVDHSIMTYEPFRKNFYAPRSETSALNAQEVASIR-SELNIRVEGADVPAPVRSFMH-LGFDKKMLQTLMKLGLEAPTAIQAQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRELQRGEGPIAIVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQALKKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQTLMFSATFRKRIEALALDVLTNPVKLTIGQVGQANEDIRQIAVVLPGHGAKWPWLMSKIRALVDEGRLLIFAGSKAGCEELAKNLAV---------AFPVAPALCLHGDKTQKERA-----------------EALMKFKHGECRVLVATDVAARGLDVKDVKNVVNFDVAKNIDTHVHRIGRTGRMGQE-GFEPGTAYTLVTRNESQFAAQLVYNMDVSGQPVSAELLAL 575          
BLAST of NO12G00490 vs. NCBI_GenBank
Match: XP_008892761.1 (hypothetical protein PPTG_01275 [Phytophthora parasitica INRA-310] >ETN20909.1 hypothetical protein PPTG_01275 [Phytophthora parasitica INRA-310])

HSP 1 Score: 474.2 bits (1219), Expect = 8.600e-130
Identity = 271/597 (45.39%), Postives = 372/597 (62.31%), Query Frame = 0
Query:  124 EEKEVDPLDAFMAGVQNKVQEEAQKPSQAPWDKPEYLDEEAAEEDENAREEGTFSDDEGGDYMRRRVA---GEDDYNYDSDAEVYAAXXXXXXXXXXXXXXXXXXXXXXGLEPGKKYSRMGPEGKKAMEVLPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTRELASQIYVEATKFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGRLLELLKTKATNLKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLLFSATFKRKVEKLANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQWLAHCLPGLVREGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKVEALHGDKDQHERSLIXXXXXXXXXXXXXXXXXXXXXXXGACRVLVATDVASRGLDIKDIRNVINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLTPRDSGMAGEMVKGLEGARQKVPAALRAM 718
            ++ EVDPLDAFM G+  +V+++   P +   DKP+ L+    + D       +F ++      + RV    G+D    DSD EVYA                        L+       M    KK MEVL P+DH+ + Y PFRK FY    + + ++ +E+   R  EL ++VEG +   P+ SF H  GF + +L+ ++K G EAPT IQAQA P+AL+GRD++GIA+TGSGKTLAF  P + H+MDQ  +QRG+GPI ++LAPTRELA Q YV+A KF   +GA  AAI+GGAGKWEQ + LK+GVE++VATPGRL+E+++ KA  + R T +VLDEADRMF++GFE QL SV+GQ+RPDRQTL+FSATF++++E LA +VL +PV++  G+ GQANED+ Q  VVLP   AK+ WL   +  LV EG++L+F  SK GCE+LA  L +         + P      LHGDK Q ER+                         G CRVLVATDVA+RGLD+KD++NV+NFD+A+N++ HVHR GRTGRM  E G E G A+TL+T  +S  A ++V  ++ + Q V A L A+
Sbjct:   42 DDDEVDPLDAFMQGIDTEVKQQRTAPPKLVADKPQVLNHVDDDAD-------SFLEEYARTTKKPRVGLNLGDD----DSDEEVYATAKQ--------------------LDDADAPDDM---AKKVMEVLTPVDHSIMTYEPFRKNFYAPRSETSALNAQEVASIR-SELNIRVEGADVPAPVRSFMH-LGFDKKMLQTLMKLGLEAPTAIQAQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRELQRGEGPIAIVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQALKKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQTLMFSATFRKRIEVLALDVLTNPVKLTIGQVGQANEDIRQIAVVLPGHGAKWPWLMSKIRALVDEGRLLIFAGSKAGCEELAKNLAV---------AFPVAPALCLHGDKTQKERA-----------------EALMKFKHGECRVLVATDVAARGLDVKDVKNVVNFDVAKNIDTHVHRIGRTGRMGQE-GFEPGTAYTLVTRNESQFAAQLVYNMDVSGQPVSAELLAL 575          
BLAST of NO12G00490 vs. NCBI_GenBank
Match: KUF81352.1 (DEAD-box ATP-dependent RNA helicase 24 [Phytophthora nicotianae])

HSP 1 Score: 473.0 bits (1216), Expect = 1.900e-129
Identity = 271/604 (44.87%), Postives = 374/604 (61.92%), Query Frame = 0
Query:  117 STPLSSGEEKEVDPLDAFMAGVQNKVQEEAQKPSQAPWDKPEYLDEEAAEEDENAREEGTFSDDEGGDYMRRRVA---GEDDYNYDSDAEVYAAXXXXXXXXXXXXXXXXXXXXXXGLEPGKKYSRMGPEGKKAMEVLPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTRELASQIYVEATKFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGRLLELLKTKATNLKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLLFSATFKRKVEKLANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQWLAHCLPGLVREGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKVEALHGDKDQHERSLIXXXXXXXXXXXXXXXXXXXXXXXGACRVLVATDVASRGLDIKDIRNVINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLTPRDSGMAGEMVKGLEGARQKVPAALRAM 718
            S   ++ ++ EVDPLDAFM G+  +V+++   P +   DKP+ L+    + D       +F ++      + RV    G+D    DSD EVYA                        L+       M     K MEVL P+DH+ + Y PFRK FY    + + ++ +E+   R  EL ++VEG +   P+ SF H  GF + +L+ ++K G EAPT IQAQA P+AL+GRD++GIA+TGSGKTLAF  P + H+MDQ  +QRG+GPI ++LAPTRELA Q YV+A KF   +GA  AAI+GGAGKWEQ + LK+GVE++VATPGRL+E+++ KA  + R T +VLDEADRMF++GFE QL SV+GQ+RPDRQTL+FSATF++++E LA +VL +PV++  G+ GQANED+ Q  VVLP   AK+ WL   +  LV EG++L+F  SK GCE+LA  L +         + P      LHGDK Q ER+                         G CRVLVATDVA+RGLD+KD++NV+NFD+A+N++ HVHR GRTGRM  E G E G A+TL+T  +S  A ++V  ++ + Q V A L A+
Sbjct:   34 SPAATAADDDEVDPLDAFMQGIDTEVKQQRTAPPKLVADKPQVLNHVDDDAD-------SFLEEYARTTKKPRVGLNLGDD----DSDEEVYATAKQ--------------------LDDADAPDDM---ATKVMEVLTPVDHSIMTYEPFRKNFYAPRSETSALNAQEVASIR-SELNIRVEGADVPAPVRSFMH-LGFDKKMLQTLMKLGLEAPTAIQAQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRELQRGEGPIAIVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQALKKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQTLMFSATFRKRIEALALDVLTNPVKLTIGQVGQANEDIRQIAVVLPGHGAKWPWLMSKIRALVDEGRLLIFAGSKAGCEELAKNLAV---------AFPVAPALCLHGDKTQKERA-----------------EALMKFKHGECRVLVATDVAARGLDVKDVKNVVNFDVAKNIDTHVHRIGRTGRMGQE-GFEPGTAYTLVTRNESQFAAQLVYNMDVSGQPVSAELLAL 574          
BLAST of NO12G00490 vs. NCBI_GenBank
Match: ETL77833.1 (hypothetical protein L917_21256 [Phytophthora parasitica])

HSP 1 Score: 472.6 bits (1215), Expect = 2.500e-129
Identity = 270/597 (45.23%), Postives = 371/597 (62.14%), Query Frame = 0
Query:  124 EEKEVDPLDAFMAGVQNKVQEEAQKPSQAPWDKPEYLDEEAAEEDENAREEGTFSDDEGGDYMRRRVA---GEDDYNYDSDAEVYAAXXXXXXXXXXXXXXXXXXXXXXGLEPGKKYSRMGPEGKKAMEVLPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTRELASQIYVEATKFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGRLLELLKTKATNLKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLLFSATFKRKVEKLANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQWLAHCLPGLVREGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKVEALHGDKDQHERSLIXXXXXXXXXXXXXXXXXXXXXXXGACRVLVATDVASRGLDIKDIRNVINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLTPRDSGMAGEMVKGLEGARQKVPAALRAM 718
            ++ EVDPLDAFM G+  +V+++   P +   DKP+ L+    + D       +F ++      + RV    G+D    DSD EVYA                        L+       M    KK MEVL P+DH+ + Y PFRK FY    + + ++ +E+   R  EL ++VEG +   P+ SF H  GF + +L+ ++K G EAPT IQAQA P+AL+GRD++GIA+TGSGKTLAF  P + H+MDQ  +QRG+GPI ++LAPTRELA Q YV+A KF   +GA   AI+GGAGKWEQ + LK+GVE++VATPGRL+E+++ KA  + R T +VLDEADRMF++GFE QL SV+GQ+RPDRQTL+FSATF++++E LA +VL +PV++  G+ GQANED+ Q  VVLP   AK+ WL   +  LV EG++L+F  SK GCE+LA  L +         + P      LHGDK Q ER+                         G CRVLVATDVA+RGLD+KD++NV+NFD+A+N++ HVHR GRTGRM  E G E G A+TL+T  +S  A ++V  ++ + Q V A L A+
Sbjct:   42 DDDEVDPLDAFMQGIDTEVKQQRTAPPKLVADKPQVLNHVDDDAD-------SFLEEYARTTKKPRVGLNLGDD----DSDEEVYATAKQ--------------------LDDADAPDDM---AKKVMEVLTPVDHSIMTYEPFRKNFYAPRSETSALNAQEVASIR-SELNIRVEGADVPAPVRSFMH-LGFDKKMLQTLMKLGLEAPTAIQAQAFPVALSGRDLIGIAKTGSGKTLAFTLPMLRHVMDQRELQRGEGPIAIVLAPTRELAHQTYVQAKKFLAVYGASCVAIYGGAGKWEQVQALKKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQTLMFSATFRKRIEALALDVLTNPVKLTIGQVGQANEDIRQIAVVLPGHGAKWPWLMSKIRALVDEGRLLIFAGSKAGCEELAKNLAV---------AFPVAPALCLHGDKTQKERA-----------------EALMKFKHGECRVLVATDVAARGLDVKDVKNVVNFDVAKNIDTHVHRIGRTGRMGQE-GFEPGTAYTLVTRNESQFAAQLVYNMDVSGQPVSAELLAL 575          
BLAST of NO12G00490 vs. NCBI_GenBank
Match: OWZ23646.1 (DEAD/DEAH box RNA helicase [Phytophthora megakarya])

HSP 1 Score: 470.7 bits (1210), Expect = 9.500e-129
Identity = 264/587 (44.97%), Postives = 365/587 (62.18%), Query Frame = 0
Query:  135 MAGVQNKVQEEAQKPSQAPWDKPEYLDEEAAEEDENAREEGTFSDDEGGDYMRRRVAGEDD----YNYDSDAEVYAAXXXXXXXXXXXXXXXXXXXXXXGLEPGKKYSRMGPEGKKAMEVLPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTRELASQIYVEATKFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGRLLELLKTKATNLKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLLFSATFKRKVEKLANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQWLAHCLPGLVREGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKVEALHGDKDQHERSLIXXXXXXXXXXXXXXXXXXXXXXXGACRVLVATDVASRGLDIKDIRNVINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLTPRDSGMAGEMVKGLEGARQKVPAALRAM 718
            M G+  +V+++   P +   DKP+ L+                +DD+   Y+     G  +     + DSD EVYA                        L+  +    M    KK MEVL P+DH++++Y PFRK FY  H + + +  +E+   R +EL V+V+G +   P+ SF H  GF   +L+ ++K G EAPT IQ+QA P+ALAGRD++GIA+TGSGKTLAF  P + H+MDQ  +QRG+GPI ++LAPTRELA Q YV+A KF   +GA  AAI+GGAGKWEQ + LK+GVE++VATPGRL+E+++ KA  + R T +VLDEADRMF++GFEAQL SV+GQ+RPDRQTL+FSATF+R++E LA +VL +PV+++ G+ GQANED+ Q  VVLP   AK+ WL   +  LV EG++L+F  SK GCE+LA  L         A++ P      LHGDK Q ER+                         G CRVLVATDVA+RGLD+KD++ V+NFD+A+N++ HVHR GRTGRM +E G E G A+TL+T  +S  A ++V  ++ + Q V A L A+
Sbjct:    1 MQGIDAQVKQQRATPKRVA-DKPQVLNH---------------ADDDADSYLEEYARGTKNPRMGQDEDSDEEVYATAKQ--------------------LDTAEAPDEM---AKKVMEVLAPIDHSTVEYEPFRKHFYTPHSETSALSGQEVAAIR-KELSVKVDGADVAAPVRSFMH-LGFDRKMLQTLMKLGLEAPTAIQSQAFPVALAGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRELQRGEGPIAIVLAPTRELAHQTYVQAKKFLGVYGASCAAIYGGAGKWEQVQALKKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEAQLRSVMGQVRPDRQTLMFSATFRRRIESLALDVLTNPVKLIIGQVGQANEDIRQIAVVLPGHGAKWPWLMSRMRSLVDEGRLLIFAGSKAGCEELAKNL---------ATAFPAAPALCLHGDKTQQERA-----------------EALSKFKHGECRVLVATDVAARGLDVKDVKTVVNFDVAKNIDTHVHRIGRTGRMGLE-GFEPGTAYTLVTRNESQFAAQLVYNMDVSGQSVSAELLAL 519          
BLAST of NO12G00490 vs. NCBI_GenBank
Match: XP_009526657.1 (hypothetical protein PHYSODRAFT_300617 [Phytophthora sojae] >EGZ17599.1 hypothetical protein PHYSODRAFT_300617 [Phytophthora sojae])

HSP 1 Score: 469.5 bits (1207), Expect = 2.100e-128
Identity = 266/583 (45.63%), Postives = 361/583 (61.92%), Query Frame = 0
Query:  135 MAGVQNKVQEEAQKPSQAPWDKPEYLDEEAAEEDENAREEGTFSDDEGGDYMRRRVAGEDDYNYDSDAEVYAAXXXXXXXXXXXXXXXXXXXXXXGLEPGKKYSRMGPEGKKAMEVLPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTRELASQIYVEATKFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGRLLELLKTKATNLKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLLFSATFKRKVEKLANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQWLAHCLPGLVREGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKVEALHGDKDQHERSLIXXXXXXXXXXXXXXXXXXXXXXXGACRVLVATDVASRGLDIKDIRNVINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLTPRDSGMAGEMVKGLEGARQKVPAALRAM 718
            M G+  +V ++ + P +   DKP+ L  E  + D    E    +        ++  AG    N DSD EVYA                        L+       M    KK MEVL P+DH+++ Y PFR+ FY  H + + +  +E+ + R  EL V+V+G +   P+ SF H  GF   +L  ++K G EAPT IQAQA P+AL+GRD++GIA+TGSGKTLAF  P + H+MDQ  +QRG+GPI ++LAPTRELA Q YV+A KF   +GA  AAI+GGAGKWEQ + LK+GVE++VATPGRL+E+++ K   + R T +VLDEADRMF++GFE QL SV+GQIRPDRQTL+FSATF+R++E LA +VL++PV++  G  GQANED+ Q  VVLP   AK+ WL   + GLV EG++L+F  SK GCE+LA  L         A++ P      LHGDK Q ER+                         G CRVLVATDVA+RGLD+KD++NV+NFD+A+N++ HVHR GRTGRM +E G E G A+TL+T  +S  A ++V  ++ + Q V A L A+
Sbjct:    1 MQGIDAQVTQQRKAPPKRVADKPQVLKHEDDDADSYLEEYARTT--------KKPRAGLSSGNDDSDEEVYATAKQ--------------------LDDADAPDEM---AKKVMEVLAPIDHSTVRYEPFRRNFYSLHSETSSLSNQEVAKLR-LELSVKVDGSDVPAPVQSFMH-LGFDRKMLHTLMKLGLEAPTAIQAQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVCHVMDQRELQRGEGPIAVVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQALKKGVEVVVATPGRLIEMIRKKTAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQIRPDRQTLMFSATFRRRIEALALDVLKNPVKLTIGLVGQANEDIRQIAVVLPGHGAKWPWLMARIRGLVDEGRLLIFAGSKAGCEELAKNL---------ATAFPSAPALCLHGDKTQQERA-----------------EALSKFKHGECRVLVATDVAARGLDVKDVKNVVNFDVAKNIDTHVHRIGRTGRMGLE-GFEPGTAYTLVTRNESQFAAQLVYNMDVSGQPVSAELLAL 523          
The following BLAST results are available for this feature:
BLAST of NO12G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25970.11.500e-23067.45atp-dependent rna helicase ddx42, partial [Nannoch... [more]
ETI45761.16.600e-13045.39hypothetical protein F443_09746 [Phytophthora para... [more]
ETK85710.16.600e-13045.39hypothetical protein L915_09551 [Phytophthora para... [more]
ETM45575.16.600e-13045.39hypothetical protein L914_09420 [Phytophthora para... [more]
ETP43648.16.600e-13045.39hypothetical protein F442_09647 [Phytophthora para... [more]
XP_008892761.18.600e-13045.39hypothetical protein PPTG_01275 [Phytophthora para... [more]
KUF81352.11.900e-12944.87DEAD-box ATP-dependent RNA helicase 24 [Phytophtho... [more]
ETL77833.12.500e-12945.23hypothetical protein L917_21256 [Phytophthora para... [more]
OWZ23646.19.500e-12944.97DEAD/DEAH box RNA helicase [Phytophthora megakarya... [more]
XP_009526657.12.100e-12845.63hypothetical protein PHYSODRAFT_300617 [Phytophtho... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009945NSK009945Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00490.1NO12G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626400gene_9958Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100774g1gene4551Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00490.1NO12G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00490 ID=NO12G00490|Name=NO12G00490|organism=Nannochloropsis oceanica|type=gene|length=2555bp
ACAGGTTGGCCTTGGGCAACAGCATGAATTTCCGACGGCCTGGCGGACAG
ACATACCGTCCTCCCGCTACAGCAAGTGCGAACATTAGTAGCAACTCCAC
CGCCGCCTTGGCGAGTAAAGCGGGCAGCAGCGCTGAGGCTGATTACTTGG
CCAAGGCTCGACAAAAAGCAAAGGGTCTCAAAGGATGGTTTGACAGCGAT
GATGATGACGATAATGCTGGCGGTGTCGGAAAGAGGCGCGGAGCGCCCCC
ACGGCTAGACGACGACGATGACCCGCTGGATGCCTTCATGAAGCAGCAGA
TGCAGGAGCAGCAGCAAGGGAGTGGAGGTGATGAAAAAGGTGCCACTGTT
CCAGGTCCTACGTCAGTTATGTCTACGCCTTTATCGTCTGGAGAGGAGAA
AGAGGTGGATCCATTGGACGCATTCATGGCCGGTGTGCAGAACAAAGTAC
AAGAGGAGGCCCAAAAACCGTCGCAGGCTCCATGGGACAAACCAGAGTAC
CTGGATGAAGAAGCGGCGGAGGAAGACGAGAATGCAAGGGAGGAAGGGAC
GTTCTCGGACGATGAGGGAGGGGATTACATGCGCCGACGGGTGGCGGGGG
AGGATGATTATAACTATGACTCTGATGCCGAAGTGTACGCAGCAGGGGCA
GCTGCAGAAGCGGCAGCCGCCAAGAAAAGCGAGGGCAGCGAGGGGGGCGT
TGGAGTGTTGGGGCTGGAACCTGGCAAGAAGTATAGTCGCATGGGGCCGG
AAGGGAAGAAGGCGATGGAGGTCCTCCCGCCATTGGACCACGCGAGCATT
GACTACCCGCCGTTCCGCAAGTGCTTTTACGAGGAGCACCCGGACGTAAC
TGAAATGGACTGGGAGGAGATGCTGCGTTATCGAGAAGAAGAATTACAAG
TACAGGTGGAAGGCCGCGAGAGCTGTCGGCCTATTGTATCGTTCAAGCAC
GCCACTGGCTTTTCCGAGATACTGCTCCGCGAAATCGTCAAGAGGGGGTT
TGAGGCCCCGACGCCGATCCAGGCTCAAGCCCTTCCCCTCGCCCTCGCGG
GTCGCGACGTCCTCGGCATCGCTCAAACAGGGAGTGGGAAAACCCTGGCA
TTTGTCTGGCCGGCAATCGTACACTTGATGGACCAACCACACATTCAACG
AGGGGACGGGCCGATCGTTCTTATATTGGCACCGACACGCGAACTCGCCT
CCCAGATCTATGTCGAAGCTACCAAGTTCTCCAAGCCGCACGGCGCCAAA
GCTGCCGCCATCTTCGGCGGGGCGGGAAAATGGGAACAGACAAAGCTGTT
GAAAGAAGGCGTGGAAATCCTCGTGGCGACCCCTGGGCGCTTACTCGAAT
TGCTCAAGACGAAAGCCACAAACCTCAAGAGGTGCACGATGTTGGTACTT
GACGAAGCCGATCGTATGTTCGACCTCGGTTTTGAAGCACAGCTTCATTC
TGTCCTGGGCCAAATCAGACCTGATCGACAGACACTTCTCTTCTCCGCGA
CCTTTAAACGCAAAGTAGAAAAATTGGCGAATGAAGTGTTGCAGGACCCA
GTGCGCGTGGTCTGTGGGAAGGCAGGACAGGCCAACGAGGACGTGACGCA
GGAAGTCGTCGTGCTCCCGAACGAGGAGGCTAAATATCAGTGGCTCGCAC
ACTGTCTTCCGGGGCTGGTGAGGGAGGGGAAGGTGCTTGTCTTTGTGTCG
AGCAAGCAGGGCTGCGAGGATTTGGCGGGAAGACTGACGATCCTACTGCA
GGCTGACGCGCGTGCTTCATCCCTCCCTCCTTGGAAGGTGGAGGCATTAC
ATGGTGATAAAGACCAACACGAGCGATCCCTAATTATGCGTCGATTCAAG
CAGCAGCAGCAGCAGCAGCAACAACAACAGGGGGGGGATGGGGGGAAGGA
GGACGGGGCTTGTCGCGTGCTGGTGGCTACAGATGTGGCATCGCGCGGAC
TGGACATTAAAGACATTCGAAATGTAATCAATTTTGACATGGCTCGCAAT
ATGGAAGCGCACGTGCATAGGTGTGGAAGGACAGGGCGGATGACGGTGGA
GGGAGGGAGGGAAGGAGGGAAGGCTTTCACGCTGTTGACGCCACGGGACT
CGGGAATGGCAGGGGAGATGGTGAAGGGGTTAGAAGGCGCAAGGCAGAAG
GTGCCGGCGGCATTGAGGGCCATGGTGATAGGAGGAGTAGGAGGAGGGAG
GGGAAGAGGAGGAGGGAGTGGGCGAGGGGGTGGTTGGAACGGAGGAGGTG
GAGGAGGAGGACGTGGGCGGGGGGGGGGAGGGAGGAGTGGTGCGGGGCCG
GGACATCATGTGGTTCCCCCGCCGGCCTCTTACAAGTCAACCAGTGGGAT
AGGTTTTGGAGGAGGAGGGGGAGGAGGAGGAGGGGGAGGTTTGATGGGAG
GGATGTCCTTGTTTATTCGACAGCAGCATGAATACCACACAGTTGCAGAT
AGAGGAGAAGGGGGGGGGACGGGAGGAAGAGGAGGAGGTGGGAGCGCACA
GCAGGGCCAGGCGCCTGTGGAGGGTGACAGGAAGAGGAAGAGCAGGTGGG
GATGA
back to top

protein sequence of NO12G00490.1

>NO12G00490.1-protein ID=NO12G00490.1-protein|Name=NO12G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=844bp
MNFRRPGGQTYRPPATASANISSNSTAALASKAGSSAEADYLAKARQKAK
GLKGWFDSDDDDDNAGGVGKRRGAPPRLDDDDDPLDAFMKQQMQEQQQGS
GGDEKGATVPGPTSVMSTPLSSGEEKEVDPLDAFMAGVQNKVQEEAQKPS
QAPWDKPEYLDEEAAEEDENAREEGTFSDDEGGDYMRRRVAGEDDYNYDS
DAEVYAAGAAAEAAAAKKSEGSEGGVGVLGLEPGKKYSRMGPEGKKAMEV
LPPLDHASIDYPPFRKCFYEEHPDVTEMDWEEMLRYREEELQVQVEGRES
CRPIVSFKHATGFSEILLREIVKRGFEAPTPIQAQALPLALAGRDVLGIA
QTGSGKTLAFVWPAIVHLMDQPHIQRGDGPIVLILAPTRELASQIYVEAT
KFSKPHGAKAAAIFGGAGKWEQTKLLKEGVEILVATPGRLLELLKTKATN
LKRCTMLVLDEADRMFDLGFEAQLHSVLGQIRPDRQTLLFSATFKRKVEK
LANEVLQDPVRVVCGKAGQANEDVTQEVVVLPNEEAKYQWLAHCLPGLVR
EGKVLVFVSSKQGCEDLAGRLTILLQADARASSLPPWKVEALHGDKDQHE
RSLIMRRFKQQQQQQQQQQGGDGGKEDGACRVLVATDVASRGLDIKDIRN
VINFDMARNMEAHVHRCGRTGRMTVEGGREGGKAFTLLTPRDSGMAGEMV
KGLEGARQKVPAALRAMVIGGVGGGRGRGGGSGRGGGWNGGGGGGGRGRG
GGGRSGAGPGHHVVPPPASYKSTSGIGFGGGGGGGGGGGLMGGMSLFIRQ
QHEYHTVADRGEGGGTGGRGGGGSAQQGQAPVEGDRKRKSRWG*
back to top
Synonyms
Publications