NO12G00430, NO12G00430 (gene) Nannochloropsis oceanica

Overview
NameNO12G00430
Unique NameNO12G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1470
Alignment locationchr12:153059..154528 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:153059..154528 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G00430 vs. NCBI_GenBank
Match: XP_005853714.1 (hypothetical protein NGA_0474900 [Nannochloropsis gaditana CCMP526] >EKU22647.1 hypothetical protein NGA_0474900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 79.0 bits (193), Expect = 1.900e-11
Identity = 72/135 (53.33%), Postives = 90/135 (66.67%), Query Frame = 0 
Query:   60 SVLRELDPPANVAVDSTTNDTSDSE-GEGGESKKYLRPPAAPLHVRVGDSFQAALPPLGEIEEERMAVEDEGPLHEQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALIAGRVDFEEDGLGSGTQA 194
            S+ ++L+P   +A + T NDTSDS+  EGG  KKYLRPPAAP HVR+G  +QAALP +   E +     DEG    +                XXXXXXXXXXXXXXXXXXXXXX++IAGR++F+EDGL SGT+A
Sbjct:   50 SISQDLEPARTLATELTANDTSDSDTEEGGGGKKYLRPPAAPQHVRIGQEYQAALPAM---EGDTNEASDEG----EDSNAQRLEVAQLRDGAXXXXXXXXXXXXXXXXXXXXXXSMIAGRMNFDEDGLDSGTRA 177
The following BLAST results are available for this feature:
BLAST of NO12G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853714.11.900e-1153.33hypothetical protein NGA_0474900 [Nannochloropsis ... [more]
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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00430.1NO12G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00430.1NO12G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00430 ID=NO12G00430|Name=NO12G00430|organism=Nannochloropsis oceanica|type=gene|length=1470bp
TGCCGCCATTTTCCTAATTCCTGTGGGAGGGGGATAGGAGGATTCAGCGT
GTGCATGCGTTGGTGACGAGGCTGGAATGCATGGTTCAGATGTGGGGGGC
TTGAGACACGCTCTATGAAAAACAAGTTGGCGACGGAGAGGAGGTTTTTG
CCCTTCATGATTCCTGGGTATCATTCATGGTATCATCCACACGCACCTTC
TTCTTGTTTGTTCTGTGGTTGTAAGTCGTGACGCCTCTCACAACACTCCA
CACCCTACCACAAGGTAACTCTTATTGGCATTTGCGTTGCTAGAGTGGCC
TCCGCAGCTGCCGTAGTAATTCAGCATAGCATACCAACATCAAGGGACTA
GGCAAAACCTCCTCCCTGTCTCACTCCTCCCCCCATCTCGGGAATGAACG
CCGACGACAACGGCAAGGATAACCCCAACAAACGCGATGGATCCCCATCT
CGCCAAGCCCCCTGCCCCAAGAAACAAGCCTTAGACGACCTGAACGATAT
GCGCGCAGCAGCAGCAACAGCAGCAGAAGCAGAAGCAGCGGCGGCGCCAA
CAGCAGGGGGAGCCGCAACGTCTGTCCTACGGGAGgtgagacacgcgttg
cttttatgtatgcatgtagcatgtatttatatattaggtgagatgtcaat
tcattcatcttgtggtcagattccgcactgtctacctggcatagcggtac
tcttaccatttagatcatgatcaccccatgatgtcatgtctcctcatacc
ttcctctacgactctcttttcccttccactcccttgttccctccaagCTG
GATCCGCCAGCTAATGTGGCCGTGGACTCGACCACGAACGACACAAGTGA
TTCGGAAGGCGAGGGAGGAGAATCGAAAAAGTACCTTCGTCCACCCGCGG
CCCCTCTGCACGTTCGCGTTGGTGACAGCTTCCAAGCAGCCTTGCCACCT
TTAGGCGAGATCGAGGAGGAGAGAATGGCCGTCGAGGATGAGGGGCCATT
GCATGAGCAACAAGAGCAGCAAGAGGGCACCGACCTGCACCAACAGTACA
GTAGTGAGGGGTCCACATCCTCCTCCACCTCCGGGACTTCCTCCACTTCC
TTTTCTTCTTCGTCGCGCGCCGCCGCTTTGATTGCCGGGCGGGTGGATTT
CGAAGAGGACGGGTTAGGCTCAGGAACGCAGGCATACCGTTAGGGTACAA
TGCGCGAGGGTAGGTGAGGGAAGGATGGAGGAAAGTAAGGGAAAAAAAGA
GAATGGAACAGATGTGAATACATACGATGGAGGAGTGTGTAGGAGTGTGC
GAGGTTGGAAAAGATTAATGACCACAGAGCTGATGGGGGAAATGAAAAAA
GACGAATTCGACAATGGCCGTAGTGCTCAAAATCATGTCAGGGCTAGCGA
ACGCAGCAGAAAAGAAAAAAGACAAGATACAAAAAGAAAACGTTAACTCA
TCGAAAAACGAAGAACAGAG
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protein sequence of NO12G00430.1

>NO12G00430.1-protein ID=NO12G00430.1-protein|Name=NO12G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MNADDNGKDNPNKRDGSPSRQAPCPKKQALDDLNDMRAAAATAAEAEAAA
APTAGGAATSVLRELDPPANVAVDSTTNDTSDSEGEGGESKKYLRPPAAP
LHVRVGDSFQAALPPLGEIEEERMAVEDEGPLHEQQEQQEGTDLHQQYSS
EGSTSSSTSGTSSTSFSSSSRAAALIAGRVDFEEDGLGSGTQAYR*
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Synonyms
Publications