NO12G00400, NO12G00400 (gene) Nannochloropsis oceanica

Overview
NameNO12G00400
Unique NameNO12G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length846
Alignment locationchr12:145903..146748 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:145903..146748 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G00400 vs. NCBI_GenBank
Match: EWM25986.1 (hypothetical protein Naga_100151g4 [Nannochloropsis gaditana])

HSP 1 Score: 255.8 bits (652), Expect = 1.600e-64
Identity = 147/265 (55.47%), Postives = 186/265 (70.19%), Query Frame = 0 
Query:   17 GRSPPFLLRLLLFLVLVVLAFPPLSATAFVLPTFPSQFSSSTLLSAADGRGDGSISRAGTLQSVAAAAGLLLLTTHPTNAAVPTFQEYYGGEGAQPKTNNYIMSTRKXXXXXXXXXXXXXXXXXTDVTIPADPKQLLSNIQETLGSLIPMIKIEGWDDVLAATKKKPLNTLFMPYLGYGTPAGLAEAIGGDKQASKALEEGRQEAGVALQQLVDYAFSNRVIFFNSLDKQQVSALASGRAPPDLSEPLGLLQDTVALVEALQKSL 282
            GR+P    RLL  L + + A+   + +AF+LP   S  SS+T LSA   R D  +SRA ++Q   A+  +L     P+ AAVPT QEYYG EGAQPKTNN+I+++ K                  +   P+DP++L+ ++ +TL +L P+IK EGWDDVLAA K+KPL  L  P+LGYG  A LA+A+GGD + S+ALEE RQEA VALQQLVDYAFSNRVIFFNSLDKQQV+ALASGRAPPDLSEPLGLL+DTV LV+ALQ++L
Sbjct:   14 GRTPH---RLLAVLSVSLFAYSRQTVSAFLLPAV-SSHSSATKLSAVSNRYDDCVSRAISIQ--VASVAILAFVASPSIAAVPTLQEYYGEEGAQPKTNNFILNS-KRQKQQGEKSANNAASSVAETASPSDPEELIESMTDTLYALSPLIKKEGWDDVLAAVKRKPLCLLLTPFLGYGNAAELAKALGGDLKKSRALEERRQEASVALQQLVDYAFSNRVIFFNSLDKQQVTALASGRAPPDLSEPLGLLEDTVGLVKALQETL 271
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BLAST of NO12G00400 vs. NCBI_GenBank
Match: XP_005818507.1 (hypothetical protein GUITHDRAFT_122286 [Guillardia theta CCMP2712] >EKX31527.1 hypothetical protein GUITHDRAFT_122286 [Guillardia theta CCMP2712])

HSP 1 Score: 76.6 bits (187), Expect = 1.300e-10
Identity = 53/200 (26.50%), Postives = 91/200 (45.50%), Query Frame = 0 
Query:   96 AAVPTFQEYYGGEGAQPKTNNYIMSTRKXXXXXXXXXXXXXXXXXTDVTIPADPKQLLSNIQET---LGSLIPMIKIEGWDDVLAATKKKPLNT-----------LFMPYLGYGTPAGLAEAIGGDKQASKALEEGRQEAGVALQQLVDYAFSNRVIFFNSLDKQQVSALASGRAPPDLSEPLGLLQDTVALVEALQKSL 282
            AA+P+ +EY  G G   +        RK                      PA  ++ +  +++    + SL    K   WDD+ A     PL             LF+ + G+ +   L   +  DK+A+  +E+ R++A + L +L ++AF+NRV+FFN  DK+ V+ L+      DL E L L+QD+   ++ + +SL
Sbjct:   78 AAIPSQEEYNVGSGTVVRAKQSNREVRKEFKAP-----------------PASKEEAVETLKDAERLVDSLSEYAKNMAWDDIRAEMLTAPLANQKFSKPDRPAILFLSFFGFKSEKELMTVMKIDKKAATRIEKLRKDASLTLMELAEFAFTNRVVFFNEEDKRTVAELSEKNLQVDLDEALRLIQDSKERIQEIIQSL 260
The following BLAST results are available for this feature:
BLAST of NO12G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25986.11.600e-6455.47hypothetical protein Naga_100151g4 [Nannochloropsi... [more]
XP_005818507.11.300e-1026.50hypothetical protein GUITHDRAFT_122286 [Guillardia... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009926NSK009926Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00400.1NO12G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609743gene_10105Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100151g4gene4539Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00400.1NO12G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00400 ID=NO12G00400|Name=NO12G00400|organism=Nannochloropsis oceanica|type=gene|length=846bp
ATGGTGCCGCTCCATAGATACCACCAACCACTACAAGCAAATGCGAATGG
TCGAAGCCCGCCGTTCCTGCTTCGTCTCTTGCTCTTCCTCGTCCTCGTCG
TCCTAGCATTCCCACCTCTTAGCGCGACGGCTTTCGTCCTCCCCACCTTT
CCATCGCAATTTTCCTCGTCAACACTTCTGTCCGCCGCCGATGGTAGAGG
CGACGGAAGCATCAGCAGAGCTGGCACCCTTCAATCCGTCGCCGCTGCTG
CTGGTCTCCTTCTCCTTACCACACACCCAACCAATGCCGCCGTCCCCACC
TTCCAAGAGTATTACGGTGGGGAGGGCGCGCAGCCTAAGACCAATAACTA
TATCATGAGCACCAGAAAGCAGAAGCAACAAGATGCGAGGGCTGAACGTG
CTGCAGCTGCATCCACAGACACCGACGTGACTATCCCAGCGGACCCCAAG
CAGCTCCTTAGCAACATTCAAGAAACGTTGGGCTCGCTTATCCCCATGAT
AAAGATCGAGGGGTGGGATGACGTACTAGCAGCTACGAAGAAGAAGCCTC
TTAATACCCTCTTTATGCCTTATCTCGGCTACGGCACACCTGCGGGGCTG
GCAGAGGCCATAGGTGGGGACAAGCAGGCAAGCAAGGCCTTGGAGGAAGG
ACGGCAAGAAGCAGGCGTGGCGTTGCAGCAGCTGGTAGATTACGCCTTTT
CGAACCGGGTGATCTTTTTCAACTCGCTGGATAAGCAGCAAGTGTCGGCG
TTGGCTTCTGGGAGGGCTCCACCTGATCTGAGCGAGCCCTTGGGGTTGCT
TCAGGACACGGTGGCGCTCGTAGAGGCATTGCAAAAAAGCTTGTGA
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protein sequence of NO12G00400.1

>NO12G00400.1-protein ID=NO12G00400.1-protein|Name=NO12G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MVPLHRYHQPLQANANGRSPPFLLRLLLFLVLVVLAFPPLSATAFVLPTF
PSQFSSSTLLSAADGRGDGSISRAGTLQSVAAAAGLLLLTTHPTNAAVPT
FQEYYGGEGAQPKTNNYIMSTRKQKQQDARAERAAAASTDTDVTIPADPK
QLLSNIQETLGSLIPMIKIEGWDDVLAATKKKPLNTLFMPYLGYGTPAGL
AEAIGGDKQASKALEEGRQEAGVALQQLVDYAFSNRVIFFNSLDKQQVSA
LASGRAPPDLSEPLGLLQDTVALVEALQKSL*
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Synonyms
Publications