NO12G00240, NO12G00240 (gene) Nannochloropsis oceanica

Overview
NameNO12G00240
Unique NameNO12G00240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3952
Alignment locationchr12:74825..78776 -

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:74825..78776 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
[Close]
BLAST of NO12G00240 vs. NCBI_GenBank
Match: EWM25999.1 (hypothetical protein Naga_101167g1 [Nannochloropsis gaditana])

HSP 1 Score: 196.4 bits (498), Expect = 2.100e-46
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 0 
Query:  378 DETASKALKLYEKHLSPQDPRMGPALVAIAQHRHMIGQAVSAEGLFRSVIDLLSTPAALASPQLRYSLYRAQFNYSKLLADWDRRERDAEDMSEKAKRAGVLRLHPFVPLSPMMYIEGAQPGEVDFF 505
            DE  SKALKLYEK+LSP DPRMG  LVAI QHRHMIGQAVSAEGLFRSVIDLLSTP+ LASPQLRYSLYRA + Y  LLADW+ RERDA  M EKA +  VLRL+P+VPLSPM+++EG  PGEVD+F
Sbjct:    2 DENLSKALKLYEKYLSPSDPRMGQVLVAIGQHRHMIGQAVSAEGLFRSVIDLLSTPSGLASPQLRYSLYRAYYGYGNLLADWEGRERDAAHMREKASQVKVLRLNPYVPLSPMVFVEGQDPGEVDYF 128
[Close]
BLAST of NO12G00240 vs. NCBI_GenBank
Match: EWM25996.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 176.0 bits (445), Expect = 2.900e-40
Identity = 89/134 (66.42%), Postives = 108/134 (80.60%), Query Frame = 0 
Query:  119 SHTDHPASFRDALVHLEAFPEVREASRLRDDHHIQRALPLMHRAIEVLDTTLGKGTTLADAARYQLALYHIEAGDFGGARDILEALTEDVQMGKNAVKDVVSVRLLLAGSCLLQDRLSAAGAAAEDALTLVETR 253
            S TD P  FRDAL  L+AFPE+++A++LR++HH  RALPLM RAIEVLDT +GKGT LA+AARYQLALYHIEAG+F  A  +L+AL EDVQ  KNAV D+ +V LLLAGS LLQD+L +AG+AAE+AL  VE R
Sbjct:  104 SSTDKPTPFRDALEQLQAFPEIKDAAKLREEHHFVRALPLMQRAIEVLDTNMGKGTLLAEAARYQLALYHIEAGEFKQAHALLQALLEDVQPSKNAVHDIFTVHLLLAGSALLQDQLPSAGSAAEEALAFVEVR 237
[Close]
BLAST of NO12G00240 vs. NCBI_GenBank
Match: CBJ27537.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 82.0 bits (201), Expect = 5.700e-12
Identity = 102/408 (25.00%), Postives = 163/408 (39.95%), Query Frame = 0 
Query:  129 DALVHLEAFPEVREASRLRDDHHIQRALPLMHRAIEVLDTTLGKGTTLADAARYQLALYHIEAGDFGGARDILEALTEDVQMGKNAVKDVVSVRLLLAGSCLLQDRLSAAGAAAEDALTLVETRAD--AYTDLLARAYGMAGVCDMYGGDWEDAYDRLQKSARISMAPAWQCRSASTLGAFHLYTGQQGGPREALAVWEETLA------------------------GLDRPREGDPKEREVGLAEARLWLNLAMVYLGDKGGEEGAKLKDLQKADETASKALKLYEKHLSPQDPRMGPALVAIAQHRHMIGQAVSAEGLFRSVIDLL---------------------STPAALASPQLRYSLYRAQFNYSKLLADWDRRERDAEDMSEKAKRA-GVLRLHPFVPLS 489
            +A   LE+  EV  A  L        A  L+ RA+E+   ++G+   L  AA ++LA    +   FG A  IL       +   NA K   +  LLL+ + L Q ++  A   +  A+ L +   D    TD L +A    GV  +  G+ +DA   L ++AR+    A Q +  + + AF++  G +    EA+ +  E  A                                    +   LA A +   L+    G+   E G        A E   +ALK+ E+ L    P     L  +A+     G+AV+AEGLFR+ +D L                     + P   ASP   ++       YS+LL  W++RE + E ++ +A++    L L P V L+
Sbjct:   24 EANAQLESLHEVSTAVDLAALGRRTEAASLLERAVEICSGSMGEDCALTRAAVHRLAQVLYDDQRFGAAEAILR------KGESNARKQFPTELLLLSKAQLFQGKIPVAVETSSRAVDLCQQDEDNTPDTDALGQALRQLGVIQVLSGEEDDAETSLLRAARLGSTSADQGKGLAAVAAFNIARGDEQSVEEAVELLNEACATTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVARLAHASV---LSTAAQGELVLERGT-----ATASERLGEALKIREQLLPIGHPATAWTLSLLARCHVAAGEAVTAEGLFRAALDSLQGIAEEVDDGIARRQRSAGTVALPLLFASPLHPHTKAATLRGYSELLLQWEKREAEGEVVARQAEKVESSLLLKPPVGLT 417
The following BLAST results are available for this feature:
BLAST of NO12G00240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM25999.12.100e-4675.59hypothetical protein Naga_101167g1 [Nannochloropsi... [more]
EWM25996.12.900e-4066.42Tetratricopeptide-like helical [Nannochloropsis ga... [more]
CBJ27537.15.700e-1225.00conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009914NSK009914Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00240.1NO12G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609650gene_10085Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101167g1gene4525Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00240.1NO12G00240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00240 ID=NO12G00240|Name=NO12G00240|organism=Nannochloropsis oceanica|type=gene|length=3952bp
ATGCTTTCTTCCGGCGCCTCTGCATCCAGCCGCGCGGTTTCTGCCACAGC
AGCCGGGCTCTTGCGACGAGGACAAATCTCACGGAGCCTCCTGCCCATTC
TCCGTCCATCCTCCTCTTCTTCCTTCTTATCCTCCACCGCCTCTTCCCGC
TCTTCCTCATCCTCGTCTTCCTTCTCGTCGCAGCATTTCCCTACCACCGC
TGCTGCGTCCTTGTCTTGTGGCCATGACATGCGCCGTCGTCCACGCCGCA
TGATGAGCACTACCACCCCCTATCCCCCCGGACACGCACACCAGCAGTCC
GCTTTCTCCTCCCCGGCCTCCACCTCCTCCACCTCCTCTTCAAAGCAAGC
CGGCAGTCATACGGACCATCCCGCGTCGTTTCGAGATGCCTTGGTCCACT
TGGAGGCTTTTCCGGAGgtaaaagggagcgagaaagggagggagggaaga
gggggagggaagagagccgtctagcgggcgatgtcgtctaccagactaag
cttcttcaattgtttcctgtttctttgtctatgtgtatatagacacgaga
cgaagacgcatgttacatacatctaaatatacaaagatatatcagacagt
tcattgatttcctctatccatgcctcccgattcctcctcccccccccttc
tccacgccagGTCAGGGAGGCATCCAGGCTCCGAGACGACCACCACATTC
AGCGAGCCTTGCCTTTGATGCACgtacgtcgtatggatagtcttgggcct
gttgtactacgtccctcactgaaagtgctcttcacctctctcgtctcgcg
ggggcatggcgtcattgcctgctgccctgctcaacccctcctttcgagac
tgtaccagagacgaaatctctcctcctcaccgcctccctccccctccttc
ctcactcccttttcctccagCGAGCGATCGAAGTGCTCGACACGACACTT
GGCAAGGGCACGACACTGGCAGATGgtacgaaaaacatcccctccctccc
tcccccctctttctctgctcccgtcaaccctccctccctccctccctccc
tcctttcctcctttcctcagCTGCGCGATACCAGTTGGCGCTCTACCACA
TCGAGGCTGGAGATTTCGGGGGAGCTCGAGACATCCTGGAGGCCCTAACG
GAGGACGTGCAGgtaggtaggtagggaggaagggagggagggaaggagag
gaggcattggggatcagaagggcgagggaagaaggggaagatagagacag
aaggctttatcggaaatctttcgtacttaagaattccatttctccccctc
ttctattttcttcccctcttctcctcctcttctccctctacctcccctcc
atccatccatccatccatccctcgttcgctccctcccttcctccctcact
ccttcttccctcgccttccgatggatggggacaaatgccatcaagggcat
ggtcttcgtccgcctgcgcctcgccggctgctgtctcacatcaaccttct
ctccttctccctccctccccccctccttcagATGGGCAAAAATGCCGTCA
AGGATGTGGTCTCCGTCCGCCTCCTCCTTGCCGGCTCTTGCCTACTGCAA
GATCGTCTTTCCGCCGCTGGCGCTGCTGCGGAGGACGCCCTGACTCTGGT
GGAGgtagagaaaggagggagggagggagggacggacggaaggagggaag
gtgggaagggagggaagggtgtaaagaaagtactcatatatgctgctgct
atctttaaggcgactctctcccctcccttcctcattcccttcctccctct
ctccctcccttcctccctcccttcctcccttcctcccttcctccctccct
tcctccctccttccctcccttccctccttccttcctccttccccccctcc
ctctggcaggagtgtatgagcgctgagactcacaccaccccttccttccc
tccctccctccctccctccagACCCGGGCAGATGCCTACACGGACCTGCT
GGCCCGCGCTTATGGCATGGCAGGAGTGTGCGACATGTACGGCGGGGATT
GGGAGGACGCCTACGACAGGCTGCAGAAGAGCGCGCGgtaggttgggagg
aagggagggagggagggagggagggagggagggagggagggagggaggga
gggagggagggagggagggagggagggagggagggagggagggagggagg
gagggagggtacggactaagtcggtctatggtttcttcccaataccctcg
acaacaggatctctatggctcctgcctacctgactcggtctctgtgtctc
actttccctctatgtcgatacccccgacaacaggatctctatggctcctg
cctacctgactcggtctctgtgtctcactttccctctatgtcgatacccc
cgacaacagGATCTCTATGGCTCCTGCCTGGCAATGCCGCTCCGCCTCCA
CCTTGGGCGCCTTCCATCTCTACACTGgtagagaagctctccccccctcc
ctccctccctccctccctccctccctccctccctccctccgtgaccgacc
accacggcgaggggctcattcatgtggaaagagacatctcaaagattcgt
cgtgtcaaccctcctctctcctctttcccccctccctccctccctttttt
aagGCCAGCAGGGGGGGCCTCGAGAGGCCCTGGCCGTGTGGGAGGAGACG
CTCGCAGGCCTCGATCGGCCCCGAGAAGGGGATCCGAAGGAGAGGGAAGT
GGGCCTCGCCGAAGCACGCCTGTGGTTGAACCTTGCCATGgtacttccct
ccctccctccctccctccctccctccctcccttcttactccccccgtggc
acggcacggtttatacacacttcctcatgcccgcccgccctccctcccgt
ggtgtagGTGTATCTGGGCGATAAAGGCGGCGAGGAGGGTGCCAAGCTCA
AGGACCTCCAAAAGGCGGACGAGACGGCATCCAAgtacgtcgacctcttc
ctccctccctccctcccgccctccctcccctgctccctcccctgctccca
accttgaatttgtgaagctcatatcctccctccctccttccttcctttct
tcccacagGGCTCTCAAGCTGTACGAGAAACACCTCTCTCCTCAAGATCC
CCGCATGGGCCCTGCTCTCGTGgtaagcacaccacagccctccttccttc
cctccctccctctttccttctctttctgcctccctccctctttccctcac
tccctccctccctctttccctcactccctccctcactccttccctcactc
cctccctcccccctcctccctccttccctccagGCCATCGCTCAACACCG
GCACATGATCGGCCAGGCCGTTTCAGCCGAGGGGCTCTTCCGCTCCGTCA
TCGATCTCCTCTCCACCCCTGCTGCTCTCGCCTCCCCGCAGCTGCGTTAT
TCTCTTTACAGgtaggtaggtagggagggagggagggagggagggatggg
aggtgcgtacgttctcatgtatcgttgacgccctatactacacaatgcgt
atgtattgacacaaggctctgtttgattacaactgttcatttatatgata
cctttctgatttaacacagGGCTCAGTTTAATTACAGCAAATTGCTGGCG
GATTGGGACCGGCGCGAGAGgtgagagaggcagggactgaggaaggaagg
atatgatggaagggaagaaggagggaggcagggagggaggggagcactca
aaatggtgagccagtctcggtgatgatgcctcacacactcccctccctcc
ctccctccctccctccctcctcccacagAGACGCCGAAGACATGAGTGAG
AAGGCCAAGCGTGCGGGCGTCCTGCGGCTTCATCCTTTCGTCCCTCTCTC
GCCCATGATGTATATCGAGGGAGCGCAGCCCGGGGAGGTTGATTTCTTCT
GA
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protein sequence of NO12G00240.1

>NO12G00240.1-protein ID=NO12G00240.1-protein|Name=NO12G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=505bp
MLSSGASASSRAVSATAAGLLRRGQISRSLLPILRPSSSSSFLSSTASSR
SSSSSSSFSSQHFPTTAAASLSCGHDMRRRPRRMMSTTTPYPPGHAHQQS
AFSSPASTSSTSSSKQAGSHTDHPASFRDALVHLEAFPEVREASRLRDDH
HIQRALPLMHRAIEVLDTTLGKGTTLADAARYQLALYHIEAGDFGGARDI
LEALTEDVQMGKNAVKDVVSVRLLLAGSCLLQDRLSAAGAAAEDALTLVE
TRADAYTDLLARAYGMAGVCDMYGGDWEDAYDRLQKSARISMAPAWQCRS
ASTLGAFHLYTGQQGGPREALAVWEETLAGLDRPREGDPKEREVGLAEAR
LWLNLAMVYLGDKGGEEGAKLKDLQKADETASKALKLYEKHLSPQDPRMG
PALVAIAQHRHMIGQAVSAEGLFRSVIDLLSTPAALASPQLRYSLYRAQF
NYSKLLADWDRRERDAEDMSEKAKRAGVLRLHPFVPLSPMMYIEGAQPGE
VDFF*
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Synonyms
Publications