NO12G00200, NO12G00200 (gene) Nannochloropsis oceanica

Overview
NameNO12G00200
Unique NameNO12G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2632
Alignment locationchr12:57413..60044 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:57413..60044 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0070531BRCA1-A complex
GO:0070552BRISC complex
Vocabulary: INTERPRO
TermDefinition
IPR010358BRE
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009909NSK009909Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00200.1NO12G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609627gene_10079Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00200.1NO12G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00200 ID=NO12G00200|Name=NO12G00200|organism=Nannochloropsis oceanica|type=gene|length=2632bp
GACGATGGTCCGGCCTGTACGCCTATGCAGTAAATACGCACGTACAAGGG
TGTAAGCGTATAGAAAGAGCATGTTCACGGCGGCCTTTATTGAAGGAAGG
GTAAGGAGGGCAGTGCGGGAGGGAGGAGGTTGATGCCGAGAGGATGATGA
CACATGCTTCTTCCTTAAATTACAACGTTATCAACACAATACAGGAAGCG
ACTACCCGCGTCCTCCTTCTCCTCCCACTTCAATCACCGTCAACATTGTC
GGACATGCTCAGCGGTCGGCGCTCCTTTGCTGTTCGTAAGTAGCCCGACC
CCTTCCTTCGGGACACCGTAACCCCCCGGAACGGTCATGACCTTTCTCCT
CCCATCTTCACGGCGCCGCCGCCGCCGCTCCCTTCTCGAAACTCAAGTCG
ACTACTGCCTCAAGAAGGGCGTCACGCTCCGCCGACTCGACGGAAAAGGT
GGAGCGAAAGGCAACAGCAGCTGCAGCGGCGGTCCACTGCAAGAGTACTA
CCACGTGAGTCTGCCCTATGCCGGCACGAGTATCGAGCTGCAAGCGGTGC
TGTATATGGGACAGGGAGGAGAGATTGGAAACGAGAATGAGGACGAAGAC
GAGGAGCAGCAGGAGGATGAGAATGAGgtgcgtacggggaggccggtttc
ttggtggaagaggccttgagggaggaacaggatgaagagcgtctcggaga
cgacgaaagagtgcataaatgactgtgtctggggaggatgtgacatcggc
attgcggcggtgctgtccataattttccatcattttccgcttcttgtctc
tttcttctccctcacgccaccatcccctcgctcacatgaactcacccgcc
ctttcacagTCCCTCTACCTTCCCCTTCCGGACCTCATCCCTCTCTCTAT
CGACTCGGCATCCCCCTCCTCCTCATCATCATCATCCCTTCACGACGCCT
ACACCACCTTGGCCTGGAACACTCTCCAGCTCGACCCTGCCTGTGCCGAG
TGGGGGCCCGAAGGAGGAAGGGAGAAAGGGAGGGAGGGAGGATGGGGGAG
CACGGCGAAAGGTTTGTTCGAGCTGTTACTAGCGATAAAAAGGCAGGTGA
CTGAATATCATGTGAAGAACGTGCAGGGCTTTGCTTTGGAGGATAGCGTA
CGCTTCGAGCTGGAGATGATGgtacgtgaagagagagggagggaggcagg
aaggaaggaagggagggagggagggaggggatcaaaaggctcatgggcat
gccggcatctaaactgcggccatcttctctccttgatcgtcacaccgccc
taccaccaacatttacctctttccttcccttcctcgcctcctcctctcct
tccatagGCCGGCCTCCCTGGCTTGGAGCTTCTGACCCGCACAACTTACG
CCGGCCGCGAGATCCACGTCCTCCTCCCGCTCTGGGCTTCCCCCTCCTCT
TCCTCCACTTCCTCCCCTTCCTTGCTCTCTGATGATGATAAGGATGAGGA
CGAGGAGGAGGAGGACGACGAGGGCCGGGACGCCTCGAATGCAATAAGTC
AAACGACGGACAAGACTCCTGTCGGTGGCCTTGACGCTCCGCCGCCCTCC
TCCTCTTCCTCCTCCTGCCCACCCTTCGGCCGGCACCTACAACTCCACCT
CACCTACAGCCTTGACCCCCTTGCCACGACTGTCTTCACAGGCAGCAATA
GCAGCAGCAGTAGTGGCAGTAGCAGCAGAACCACCACCACCAGCAGCAAA
GTCCTCCTCCGCCCAGCTCGCACCACCGACCCCTCCCTGGCCCTACCCCT
CACCCGCGAGGCCGTCTGTCATTCCTCCCTCCCCTCCCCCTCCCAAGACG
ATATGCTCATCCTCGACTACCTGAACAAGGTACGAAACCTCTTCCTCGTT
CCCTTCCTCAAGCGTCAGAGCTTCATTCGGGCGCTAATGGCGAACTTTAC
GATGATAGAATTTGATGCCTGTGAGTTTGCTTCGGCGACCATCCTCCTTC
GGATTCACTTGCCCAGGGTGGGGAGGAGGAAGAAAAAGAAGAAGAAGGGG
AAGGAGAAGGACGACGAAGGGGGGGGTGAAAGAGAAGAAAAGAGGCCGGA
TGGGGAGGAGCATGAGGAGGAGGGCGGGGAGGAAGAGGACGAGGAGGAAA
ACGAGGAGGAGCACTCTTTTTTGCTTCATTTTACGTTCCCCTGGGATTTT
CCAGCGGACAGGTCTCCGCCCGAGGTGCTGTTTTCGGACGTGGCGAGGGC
AAGGGACAGAATTCGTGTGGACCGAGAGAGGGGTGAGTGGAGGTATAGTC
CGCGATGGGAGGGGAAGAGGATGGCGGAGGCGCTGGTGGAGCATGCGAAG
GCCGTCATTGCCGAGGATTATGGCAGGATGATGGGCTTCACCATGGCGAT
GCATTAAAAGAGGATGGGGGATAGAGGAGAAGGAGGAGGAGGAGAAGGAG
GAGGAGGATTGACACAGGAACGTGTATATAGAGAGCGAGGAGTCCGTAAT
TCAGTCGGCAGGATTCAGGATAAAGGCCGATCCTTCTAGTCCCTCTGCTG
CCCTCTGAGGGGTACAAGAATTAAAAATAAAAGGAGCAGTAGTCTGAAAA
CAGCGCGGTTCGAGGTCTCCACTCGTGTCATT
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protein sequence of NO12G00200.1

>NO12G00200.1-protein ID=NO12G00200.1-protein|Name=NO12G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=551bp
MTFLLPSSRRRRRRSLLETQVDYCLKKGVTLRRLDGKGGAKGNSSCSGGP
LQEYYHVSLPYAGTSIELQAVLYMGQGGEIGNENEDEDEEQQEDENESLY
LPLPDLIPLSIDSASPSSSSSSSLHDAYTTLAWNTLQLDPACAEWGPEGG
REKGREGGWGSTAKGLFELLLAIKRQVTEYHVKNVQGFALEDSVRFELEM
MAGLPGLELLTRTTYAGREIHVLLPLWASPSSSSTSSPSLLSDDDKDEDE
EEEDDEGRDASNAISQTTDKTPVGGLDAPPPSSSSSSCPPFGRHLQLHLT
YSLDPLATTVFTGSNSSSSSGSSSRTTTTSSKVLLRPARTTDPSLALPLT
REAVCHSSLPSPSQDDMLILDYLNKVRNLFLVPFLKRQSFIRALMANFTM
IEFDACEFASATILLRIHLPRVGRRKKKKKKGKEKDDEGGGEREEKRPDG
EEHEEEGGEEEDEEENEEEHSFLLHFTFPWDFPADRSPPEVLFSDVARAR
DRIRVDRERGEWRYSPRWEGKRMAEALVEHAKAVIAEDYGRMMGFTMAMH
*
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Synonyms
Publications