NO12G00180, NO12G00180 (gene) Nannochloropsis oceanica

Overview
NameNO12G00180
Unique NameNO12G00180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1884
Alignment locationchr12:53425..55308 +

Link to JBrowse

Properties
Property NameValue
DescriptionC2h2 zinc finger
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:53425..55308 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR013087Znf_C2H2/integrase_DNA-bd
Homology
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BLAST of NO12G00180 vs. NCBI_GenBank
Match: XP_005855374.1 (c2h2 zinc finger protein, partial [Nannochloropsis gaditana CCMP526] >EKU20986.1 c2h2 zinc finger protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 83.2 bits (204), Expect = 2.000e-12
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 0 
Query:  292 SGLAQTVAELLMNYQPSSCERRPFYCRICRYQGNNIDDLKEHKKSEMH 340
            +GLAQTVAELL NYQP+S ERRPFYCRICR+QG +++DL  HKK E+H
Sbjct:    1 AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELH 48
[Close]
BLAST of NO12G00180 vs. NCBI_GenBank
Match: EWM26007.1 (c2h2 zinc finger [Nannochloropsis gaditana])

HSP 1 Score: 80.9 bits (198), Expect = 1.000e-11
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0 
Query:  294 LAQTVAELLMNYQPSSCERRPFYCRICRYQGNNIDDLKEHKKSEMH 340
            LAQTVAELL NYQP+S ERRPFYCRICR+QG +++DL  HKK E+H
Sbjct:   34 LAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELH 79
The following BLAST results are available for this feature:
BLAST of NO12G00180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855374.12.000e-1272.92c2h2 zinc finger protein, partial [Nannochloropsis... [more]
EWM26007.11.000e-1173.91c2h2 zinc finger [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009907NSK009907Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00180.1NO12G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609624gene_10077Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100499g5gene4517Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00180.1NO12G00180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00180 ID=NO12G00180|Name=NO12G00180|organism=Nannochloropsis oceanica|type=gene|length=1884bp
AACACACAGCTTTCAAAGCATGAAACCAAAATTTCACGGAATCAATTTCA
AGAAGCGGCCACGCCCCGACGCAGACAGTTCCATTCCATCTAAGCAGCGG
TCACAGCCAACTGCTGCTTCTGCTGATGCCACCCCTGCCCCTCTTCCTCC
TCGCCAAGCCGCTATCCTCCCTATAGGTCTACGCCTTCGACGAGAGAAGA
AGCTCTTGCGCAAGACAAAAAGGAAGAATAAGAAGgtagggcagcgagcg
cagaagcggtttaaggtgtgttcgtttatgtggtgtgttagcatgagggc
gggaggtaatttttataacccttctggaaaatacgtgtcattgtcaactc
aatttccatctaaacactaccacagGGGGGCGATGATGGTGGCAAGATAG
AGAGTGGTGACGACGATGTCAGCTTGGCGAGCAGTATTGCCCTCTCTTCA
TCGGACGAGGAGGAGGAGGAGGGGAAGGACGACGACGgtaggctccaatt
ctttcccctacttgcattgccattttattgttcaatgaatggagtgcgat
tctaaatgaatcgaaatagcctttttcgctctattgtgtaagaaagtatc
tagaggagtcattcatcctgcttccaaccctcacgcccttctttcccccc
ccccaatttttactttctcctcctcctctcaccagTCAACGATGGCCAAA
ACAAGAAAGTAAAGCTAAATGATCTAGACGCCCAGGTCGCAGCTCTCGAA
CGTGAACTTGGATCTTTCCCTTCTTCACGCCATTCGTCCCCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTTCTCCGATGAAGAAGAAGAAGGCGAAGAGGAAGAA
CGAGATGGACTCTTGATCCAAAAAGGTGGCGCCATCCTCAAATCCCGTCT
CGTCAAAGAAGCATCCATCCCCCCGCTCCCCTCCCACCTCCTTCCCCTCC
CTGAGTGCAAGGGCAAGGGGGGCAGTCGAGCCACCACCTCTCAAGACGCC
TATGGGAACGACATACCCCAAACAAAAAAGCGCAAAACCCGCAAGGAGAA
AATGGCAGGAGACCAACTGAAGAAGGAGCGGGAGCAGCGTGAGGAGGGGG
AACGAGGCGGTACAAATGCCGGACTGCTCCCTTCTTCCTTCACTTCCTCC
TTCCCTCCTTCCTCTTGCTCGGATCGGTCCTCAGGCCTGGCACAGACCGT
CGCAGAGCTGCTGATGAATTATCAACCTTCCTCTTGTGAGCGGCGTCCTT
TTTATTGCCGTATTTGTAGGTATCAGGGAAATAATATTGATGATCTGAAG
GAGCATAAGAAGAGTGAGATGCACGTCATGGCTGAGGAAGGGGAGCGCAA
ACTGGCCTTTTGCCGATTGTGTCGGAAGCAATTTACTAGTCCTGAGCAAT
TAAAGGGTCACTTGAAAGGAAAGCCCCACCAGGAGTTGTTGATGAGACGG
AGGCGGGGGGGAGGAGGAGTGGCAGGCAGAGAGGGAGGAAAAGGATTAGT
GTATGGGTAAAGGAGTGGAAAAGAATGATCGACTGAACGCAGACTGTTTT
TCTTGTCTGGCTTGGACGAGCATCGCTCTTCATATTGTGCCACCTTTCTT
AGAAATATGGGGCATGGACACAGGTGTGGCGTAGAGCCACGCATATAGTA
CCCAAATTAACCTCCTCTGGTCTGATTGTGGTGGAGTGCTTGGAGCCCGG
CAAAAACTAGGAAGAGAGGTATGCCTTATAAATCTTGAACGTAAGAACGT
TACTGAAATAGCCAATTTCCTCTTGTGTGTAGTTGTAAAGCGCGCGGATA
AAGGACGGCGGGACAAATCAGGGACAAAAGCACA
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protein sequence of NO12G00180.1

>NO12G00180.1-protein ID=NO12G00180.1-protein|Name=NO12G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MKPKFHGINFKKRPRPDADSSIPSKQRSQPTAASADATPAPLPPRQAAIL
PIGLRLRREKKLLRKTKRKNKKGGDDGGKIESGDDDVSLASSIALSSSDE
EEEEGKDDDVNDGQNKKVKLNDLDAQVAALERELGSFPSSRHSSPSSSSS
SSSSSSSSSSSSSSSSSSSFSDEEEEGEEEERDGLLIQKGGAILKSRLVK
EASIPPLPSHLLPLPECKGKGGSRATTSQDAYGNDIPQTKKRKTRKEKMA
GDQLKKEREQREEGERGGTNAGLLPSSFTSSFPPSSCSDRSSGLAQTVAE
LLMNYQPSSCERRPFYCRICRYQGNNIDDLKEHKKSEMHVMAEEGERKLA
FCRLCRKQFTSPEQLKGHLKGKPHQELLMRRRRGGGGVAGREGGKGLVYG
*
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Synonyms
Publications