NO12G00080, NO12G00080 (gene) Nannochloropsis oceanica

Overview
NameNO12G00080
Unique NameNO12G00080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1189
Alignment locationchr12:14766..16516 +

Link to JBrowse

Properties
Property NameValue
DescriptionFatty acid hydroxylase-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:14766..16516 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008610lipid biosynthetic process
GO:0055114oxidation-reduction process
GO:0008152metabolic process
GO:0055114oxidation-reduction process
GO:0008610lipid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0016491oxidoreductase activity
GO:0016491oxidoreductase activity
GO:0005506iron ion binding
Vocabulary: INTERPRO
TermDefinition
IPR006694Fatty_acid_hydroxylase
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO12G00080 vs. NCBI_GenBank
Match: EWM26012.1 (fatty acid hydroxylase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 180.6 bits (457), Expect = 7.300e-42
Identity = 101/179 (56.42%), Postives = 120/179 (67.04%), Query Frame = 0 
Query:  109 PLSPPHRSSSSSSPSFPSPVPSSTTSKPLVDVRQLSSEDATLRFPSADFAVPTTLPSALFIFFSHPSIILILVGIASLSTGRL-LSSPLLPPSLPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPFYHVSIDPPLLVAVWGAVACGAGWLMLPQPWVWTVLG 287
            P+S P  S  S +   PSP       K LVD RQL          + DF+VP TL +AL++FF+HPSI+LIL G+A L  GR   S P    SL  +  E +L+ LT+ GW+LQEW LHRFLLHSS  W GREIHAQHHALPFYHVSIDPPLLV VWGA+AC  GW+ +P+P VWTVLG
Sbjct:  121 PVSAPRGSLPSQTSLLPSP-------KRLVDARQLPPSVVHQNL-ATDFSVPRTLSAALWMFFTHPSILLILCGLAGLVAGRFSFSGP--SSSLLQIFLECSLVLLTIVGWILQEWFLHRFLLHSSFDWFGREIHAQHHALPFYHVSIDPPLLVGVWGAIACILGWVFVPRPLVWTVLG 289
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BLAST of NO12G00080 vs. NCBI_GenBank
Match: PSC73834.1 (fatty acid hydroxylase isoform B [Micractinium conductrix])

HSP 1 Score: 91.3 bits (225), Expect = 5.800e-15
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 0 
Query:  159 VPTTLPSALFIFFSHPSIILILVGIASLSTGRLLSSPLLPPSLPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPFYHVSIDPPLLVAVWGAVACGAGW 274
            VP TL  AL +FFSHPS +LIL G+ +++  R + SP+ P +      ++ +     A W LQEW +H +LLHS   W GR IH  HHA P++HVSID P LVA + A +    W
Sbjct:   39 VPCTLRGALALFFSHPSSLLILAGLLAVAAVR-VQSPVHPAA------DVGVAAGVAALWCLQEWVVHAWLLHSPFDWAGRRIHEGHHARPYFHVSIDGPPLVAAFMAASLALFW 146
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BLAST of NO12G00080 vs. NCBI_GenBank
Match: PSC73833.1 (fatty acid hydroxylase isoform A [Micractinium conductrix])

HSP 1 Score: 89.4 bits (220), Expect = 2.200e-14
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = 0 
Query:  159 VPTTLPSALFIFFSHPSIILILVGIASLSTGRLLSSPLLPPSLPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPFYHVSI-DPPLLVAVWGA 267
            VP TL  AL +FFSHPS +LIL G+ +++  R + SP+ P +      ++ +     A W LQEW +H +LLHS   W GR IH  HHA P++HVSI DPPL  AV  A
Sbjct:   39 VPCTLRGALALFFSHPSSLLILAGLLAVAAVR-VQSPVHPAA------DVGVAAGVAALWCLQEWVVHAWLLHSPFDWAGRRIHEGHHARPYFHVSIDDPPLAAAVMAA 140
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BLAST of NO12G00080 vs. NCBI_GenBank
Match: XP_005827595.1 (hypothetical protein GUITHDRAFT_44036, partial [Guillardia theta CCMP2712] >EKX40615.1 hypothetical protein GUITHDRAFT_44036, partial [Guillardia theta CCMP2712])

HSP 1 Score: 71.2 bits (173), Expect = 6.200e-9
Identity = 47/120 (39.17%), Postives = 61/120 (50.83%), Query Frame = 0 
Query:  159 VPTTLPSALFIFF-SHPSIILILVGIASLSTGRLLSSPLLPPSLPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPFYHVSIDPPLLVAVWGAVACGAGWLMLP 278
            VP T+  A+  FF        ILVG          +  L+P        +L ++ L    WM QEW LH++LLH S  W G+E H QHH L +Y+VSIDP  LV  W   A G  +L+LP
Sbjct:    4 VPATMERAIQRFFLGKDHSPRILVGAVMAMAVSRAAMALVPGGETFDHLDLLVLALVCQFWMFQEWWLHKYLLH-SFKWWGQEYHHQHHLLDYYYVSIDPVWLVVSWFLAAFGLFYLLLP 122
[Close]
BLAST of NO12G00080 vs. NCBI_GenBank
Match: GAQ85400.1 (fatty acid hydroxylase [Klebsormidium nitens])

HSP 1 Score: 69.3 bits (168), Expect = 2.400e-8
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 0 
Query:  159 VPTTLPSALFIFFSHPSIILILVGIASLSTGRLLSSPLLPPSLPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPFYHVSIDPPLLVAV 264
            VP  L  A   F   PS++L L  IA+++  R           P  L +  +I +  A W   EW LH  LLHS+  W GR IH +HH  PF+HVSID   LVA+
Sbjct:  190 VPRRLDEAAVHFLKQPSVLLSLAAIAAVAAAR--------SRFPWRLADGPVIVIMAAWWAFFEWFLHAKLLHSNYNWFGRGIHKRHHEAPFHHVSIDGLDLVAI 286
The following BLAST results are available for this feature:
BLAST of NO12G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM26012.17.300e-4256.42fatty acid hydroxylase-like protein [Nannochlorops... [more]
PSC73834.15.800e-1544.35fatty acid hydroxylase isoform B [Micractinium con... [more]
PSC73833.12.200e-1446.79fatty acid hydroxylase isoform A [Micractinium con... [more]
XP_005827595.16.200e-939.17hypothetical protein GUITHDRAFT_44036, partial [Gu... [more]
GAQ85400.12.400e-840.00fatty acid hydroxylase [Klebsormidium nitens][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009895NSK009895Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00080.1NO12G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G00080.2NO12G00080.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609554gene_10064Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100150g7gene4508Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00080.1NO12G00080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G00080.2NO12G00080.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00080 ID=NO12G00080|Name=NO12G00080|organism=Nannochloropsis oceanica|type=gene|length=1189bp
AACACACAGGATGGCTAACATTGCCTGTTGCACCACAGCAGCAGCAGCAG
CAGCAGCTGCTGGAGGCGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCG
TCAACACCCCTCTTGCCGTCGCCGGCCTCGATCCCAAGGCAATACTTCGA
TCGTAGGCCTTCATCACCACCGCCAGCTGCAGCAGCACCATCACCACCAC
CTTTCACAGTCTCCCCGCTCTTCCAGCATAAGTATGTACATCGACACCCA
GAAAGACAGCCACTACCAGAAGAACGGCGGGGCCGAATGGGGCCATTGCA
Ggtatgtacgtcgccaaccctgatatctgccttcatctttcccgcgcatg
ccgggccggagccttgatgaaaaattattgaaagcaagccatgcattttc
tcatattcgctcattccctttttcgaacctgccgctgtcatctccttctg
cccactctcttcgttcctcccacttcccccacccgaccccaccctcagGC
CATACAGACCTGGCTCGCTCCCGGCCCAGCTCCTCTTTCCCCGCCCCACC
GCTCATCTTCCTCTTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGCTCT
ACAACAAGCAAGCCACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGACGC
AACTCTCCGTTTCCCATCCGCCGATTTCGCAGTCCCCACCACCCTGCCCT
CCGCCCTCTTCATTTTCTTCAGCCACCCGTCTATCATCCTCATCCTTGTT
GGCATCGCCTCCCTCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCTTCC
TCCCTCCCTTCCTCACCTCCTCTTCGAGCTGACCCTCATCCCCTTGACCG
TGGCAGGCTGGATGCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTCCAC
AGCTCTCTCCCCTGGCCTGGCCGGGAAATCCATGCACAGCATCACGCCCT
CCCCTTCTACCACGTCTCGATCGACCCTCCCCTTCTGGTGGCGGTATGGG
GCGCAGTAGCGTGTGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGGGTT
TGGACCGTGCTGGGGGTCAGTTCAGGGAGGGAGAAAGGAAAGGAGAGGGC
AACGAGAGGGGGAGACGAGCGAGGGAAGGAAACAATAATTTGATATTTGC
ATGATCTTGAAAGGATCAGTCATCATTGTCCGCCTCATA
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protein sequence of NO12G00080.1

>NO12G00080.1-protein ID=NO12G00080.1-protein|Name=NO12G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MANIACCTTAAAAAAAAGGALISRACFVLPSTPLLPSPASIPRQYFDRRP
SSPPPAAAAPSPPPFTVSPLFQHKYVHRHPERQPLPEERRGRMGPLQAIQ
TWLAPGPAPLSPPHRSSSSSSPSFPSPVPSSTTSKPLVDVRQLSSEDATL
RFPSADFAVPTTLPSALFIFFSHPSIILILVGIASLSTGRLLSSPLLPPS
LPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPF
YHVSIDPPLLVAVWGAVACGAGWLMLPQPWVWTVLGVSSGREKGKERATR
GGDERGKETII*
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protein sequence of NO12G00080.2

>NO12G00080.2-protein ID=NO12G00080.2-protein|Name=NO12G00080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MANIACCTTAAAAAAAAGGALISRACFVLPSTPLLPSPASIPRQYFDRRP
SSPPPAAAAPSPPPFTVSPLFQHKYVHRHPERQPLPEERRGRMGPLQAIQ
TWLAPGPAPLSPPHRSSSSSSPSFPSPVPSSTTSKPLVDVRQLSSEDATL
RFPSADFAVPTTLPSALFIFFSHPSIILILVGIASLSTGRLLSSPLLPPS
LPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIHAQHHALPF
YHVSIDPPLLVAVWGAVACGAGWLMLPQPWVWTVLGTYWLMGLLYEWAHF
SVHTRVRPRTALGKAVKAHHTKHHLKCDGLWFAFSWPWIDTVMGTVPGRE
GG*
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Synonyms
Publications