NO12G00050, NO12G00050 (gene) Nannochloropsis oceanica

Overview
NameNO12G00050
Unique NameNO12G00050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2789
Alignment locationchr12:9290..12078 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:9290..12078 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009891NSK009891Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00050.1NO12G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|316019gene_10061Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00050.1NO12G00050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00050 ID=NO12G00050|Name=NO12G00050|organism=Nannochloropsis oceanica|type=gene|length=2789bp
CAGTTATGTCAATCAACAGGTATGCTACATTCCTCGCCCTTTATCTTACC
CCACCTCCTTATCTCACTTCCGTCAATTATGACAAGGGATTACAAGTCAT
CTCCTTTCTCGAATGTCTTACGACTCCTCTTTCCACTCCCTTGTGTTTGG
GTCACAACGTACCTCTGTTCGTGCTCCTATCTGCCAGTGTTGCCTTGGCG
TAGCACCGCAATTCCGAGGCCCCTTTAGCAAAAGCGAGAGCTTGATTGCA
CTGTGGAAGGAAGCCACCATTCTCAAACCTGATCGATAAATATGTAGGGG
AGGGGATAGCGTCGGAGGGGGGAAGAGGGCGGGAGGGAATCGTGCAGAGC
AGCAGTCTGTCAGCTTTCCCGCTCTCTCACTTCTCTCAGAGCGATCCTCG
TACATGACTTGTAACCCTTCTTTTTAGTCCCTACTTACTACATACGTACC
ATTGCCTTGCAAATTGCTCCGGAGAGAGTGGCTGCCAAAGGGAGATGACC
ACGCAAAAGGCAAGGGACAGGAGGCCCATTACTACGGCACCAGGGTACTT
GAGAAGAAGTGACGACCACAAGGACCCTTTGCCCTTTCGGACCTTTTTCA
ACGAGGCAGCTACGACGGCTGAGGATCCCATGCTAGGGCGCACCATGGCT
TCTCTGCCTGCAGTCAAGGGTTTGTGTGAGGCAGATGGGTAGCATGGCCG
AGCAAGTTGCAGTTTTTATGGGCGAGTTGGCGACGAAGTGTGGTCATACC
TAGAAACTCAAGTACTCCTGTTGTATTAACTGTAGCCATACTTGACAGGT
AAGTGCATGACTCTTGTATGCATGTGCTTAGTCAGCGTGGAAGTTGCGAG
CGCCTTTTCCTGGTAATTTCCTGTCTAACATTTTACATTGCTTTGAGGCA
TTCCAACCCCGCCATGTCCTTATTTTACCGTGCCTCAGGCACAAAAGGTT
TCACACCATCACGACGACGACAGGGAGGTGGAGGTCTGCAAGGCACAATA
TGTGGACATAGCTGCTGTTTGTGCACGAAATGAACTTTGTCTTTTATTTC
AGGAAGGAAAGACTCCTACGAAAGCCGCGCATGGACGTCGTGTCAAGGCT
GACGCTCACTCCTCCCTCGCTCCAATTCACAAACACAGAGCAGGCAAGAT
GGAAATTATTATGTATTTTATCTGGGGAATCATATACATAATCTCAGGCT
TTGGTGTCCTGGCCTGTGCCTCTATCGTTCTTGTgtacgtatttcgggtt
tgcgccctccccgtcctcctccttgttgtcccttcttgctagctacgcca
tgccccttctcactgccacctattggttgtgcaattccctggcaagcaac
tctgttaaatattgcccatgtcttaacagttcctttattacctcccaacc
ctctcctccccaaccagCATGGCCCGAGCCTGCCTCTCCTCGGGTAAGCA
TATCCTTGCCGGCCTCCCTCCTCGCTTCGGAGACATCGAGGCCGCCAAGA
CTACCGAGCGCTTGCGCGGAAAAAAAAAAAAAAGCAGCAACAGCAACAGC
AACAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAGGAGGGAGGGGAGAAGGAAGGACGGAGGAAGAG
GCGGACACGCCGTCGTCGCTGGGGATGGAGGACACAGGGTTTGTGGATGT
AGAGATTGGGCCGGAGGAGGAGAAGGAAGAAGGAAGGGAGGGTAGGGAGA
GGAGGGAGGGAGATAGGGGAGTGGAGCCTAGCAGCGGCGGGATGGTGGTG
GAGTTGTCGGTCATGGCGAGTGGAAGCAAGGTGCTGGCGCAGTAGGGGGA
GGGAGGGAGAGTGGGGAGAAAGGGAGAGAGTGGAGGGAGGGAGAGACATA
TGGAGAGAGAGAGGAAGGAAGGGAAGGAGAAAGATTGACGAAGAAGAAGG
TTTTGTAAGGCGGGTTGGCGGTGTCAACGTGATGAGGGAGGAAGGAGGGA
GGGACAGAAAGAGGAGGAGCAGCAGTAAGATCATTCAAGCAAAAGACATG
TTAGAAAAAGTGAGACTTGGAAAGAGAGTAAGACGCTGTTTGACCACTGA
GTGCAAGAATACAAATATAAGAGGAAGTCAGGAGAGAGGGGGGAATGGAG
TGAGCGAGGCAGGGGAAGGAAAGTGAATTCGGAAAAAGAGCAGTCGGAGG
AGGTTATTGGATTAGAAATGGCGCTGGCCGGAACGTTCTTTCTTAGAAAT
TTGACGATCAGTCAGACAGTCAGGCAGTCAACCAATCAATCAATCAGTCA
GCCAGCCAGTCAGTGAGGAAGTACGCAATTCAGTCACTCATCTATCTAAG
TATCTTTCAGTCTGTGGGGGTCTATTATGTCCAGCGTTCTGCGAGTGCGA
GACGCTGTCACAGGGACGGGACGAAGAGGCAAACAAAGTAAAGAAGGAGA
AAGAGAGGGCCCGAGAGAACATAGGAGCAGAGGGAGGGCAGGAGGGAGGT
GACGGGTGACTTGAGCACTACCATCATTAAATGAAGAATTTGAACCACTC
TGAGAGTAGCACATCCACATCCGTCAGGCAAACTGACCCAGAGGGATAGG
AATTAAGAGAGAGAAAGAGAGAGGGACGGTGAAAGAATAAGAGGAGAGAC
TGAAGGGCAAAGGTACAAGAAGCAAGTCAAGTAAAAACGAGCATGTAAAT
CGACATGTAATTAATGTCCCTACCTCTTCATCCTTCTACCTCCGATCGCC
TAAAAGAAGCAAAACAAACCCACCATACACACACTCACA
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protein sequence of NO12G00050.1

>NO12G00050.1-protein ID=NO12G00050.1-protein|Name=NO12G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MEIIMYFIWGIIYIISGFGVLACASIVLVMARACLSSGKHILAGLPPRFG
DIEAAKTTERLRGKKKKSSNSNSNSNSNSNSSSSSSSSSSSSSSNRREGR
RKDGGRGGHAVVAGDGGHRVCGCRDWAGGGEGRRKGG*
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Synonyms
Publications