NO11G03400, NO11G03400 (gene) Nannochloropsis oceanica

Overview
NameNO11G03400
Unique NameNO11G03400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3332
Alignment locationchr11:1089004..1092335 +

Link to JBrowse

Properties
Property NameValue
DescriptionRna polymerase-associated protein leo1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1089004..1092335 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016570histone modification
GO:0006368transcription elongation from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0016593Cdc73/Paf1 complex
Vocabulary: INTERPRO
TermDefinition
IPR007149Leo1
Homology
The following BLAST results are available for this feature:
BLAST of NO11G03400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR019ncniR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03400.1NO11G03400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|675708gene_12279Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03400.1NO11G03400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03400 ID=NO11G03400|Name=NO11G03400|organism=Nannochloropsis oceanica|type=gene|length=3332bp
AGACCACAGGAGCCAGTCTGTACGGCTTCAAGGATCTTACTCGAGCTATG
GCCTCTAACAAGAAGGAGCTGGATGAGCTGGGCCTAGGGAGCGACTCGGA
GGAGGATGAGCAAGAGGAGGAGCAAGCGGTCCCTCCTCCGCCCGCAGACG
AGACGTCGCCATCAGCAGCAGCAGCCACAGAGGCTAAAGGAGGGTTAGAA
GCAGCAATTGAGGCCTCAATTCCAGgtatgcatcgacctcaagttcgcca
tcgctttctacttcttacttccttactttcttcacttactcacccctcta
tcgttaccatgtttccttcccacttcttcactcagAGCCTCCCCTGCCCG
CGCGAAGCATGATGAGTGCCCGCATCGACACGTTAGGCCTGGGCTCGTCA
TCAGAAGAAGAGGAGGAGGAGGAGGAGGAGGATGGAGACGGAGGAGAGCG
AAATGTTTTGCCTTCCAGTGCAACGGACCTTGGGCGACAGACAAGAgtgg
gtcgatggacagagggggagggagggagggagaaatggagggaggatcgt
actcttacacatatatttatacatatactctgtgtcaatgcaattatagc
tcactgtcttcttctctctttttaaatcaagtcggaaatctgcctgctac
taccgcctcgcccaccgcccgcatgacactcacatttgatccctctctcc
ctccctcctccctccacgctaacagTCCGAGGCCCGCATCGCTGCTGCCG
AGCCCGTGGTGGTCACCGTACCACTGGTGCCGCGCCTTCCTCCCAAGACG
CAGGCCATCCATGTGTCGCTGAACCCCCTGTTTGTGGGAGTGCAGTTTAA
GGAGAGCAGTGACAAGGGTCTGGgtgggtgcggggggagagagggaggga
gggagggagggagggagggagggatggagggagggaagttgatggagtca
agctattcatgtctccctccctccctccttccatcgcattcgctagCCGT
AGAGTGGGCTCAGGGGCCCAAGGGTCGAAGGGGCAGCAATTGCATCCGTT
GGCGGTTTCAGAGGGACGAAAATGGGAAGgtaggtggagtaggggggaag
ggaggggggcaagggagggagggaggaagggggggaagggagggggtgca
gaggaagaggaggagacgagagaacggagtggacttatggcctcactgat
tgactcgctcacttctccttcctccccgcctaccactaaagatagttatg
attgcccgactgattcacttgcttacacatctcctgatagcctgccgaac
tgactcactttcacactctccccctcccactctcttctcgattatagGTC
AAGACGGATCCATTCACCGGTCGGCCTTTGATGGAGAGTAATGCCCGCCT
TGTCTGCTGGCCGGACGGGAGCCGACAGCTGCTGCTAGGACGACAGCGGT
TGGAGTGTCAGGCGACGGCGATAGGGGAGAGGCGCCTGCTCGTGGACCAG
GGCCTGAGGGAGGGAGGGACCGAGGGAGGgtaagtggcttctgcttgttg
caggggagggaaggagggagggagggagggagggagggagggagggaggg
aaggagggattaggggcagggctgacaagaggagatagaggatgaaaatc
actcacgacaaacctccctcgtttctttcctccctccctccctccctccc
tccgtcagGCCCAAACGCTACCTGGAACCTGTAGCCATGATCCAAGAGAA
GATGATTCTGCAGCGAGAAAGCGTGGGGGGGAAGGGGGGAGGGAGGGCGG
GCCGACGCCGGTCGGGGCTGGCGGGGAGGGAGATTGAAAAGAAGGCGACG
ATCAAGAAGTTCGAGTCGGTGATGGACCCCGAGAGGGAGAAGGAGATGAA
GAGGCGgtaggagagggagggagggagggaggggataaaggagggaggtg
gggagggaggggaaagagagggggaggtttcaataaaagtaactatgtca
ctcaccaaccaagaccattccattccccctccctccctccctcactctgt
cgcagGCAACGTGACGAGGAAGATCGTTTGGAGCGAAAGCAGAAACGCAA
AGCTGCCGCGTTCGGGGGCCGGCTAACGAAAGGTTTTCTGGAGGACGAGG
AGGAGATTGATCCCAGTAGTAATGTGAAGAGAATCAAGGCGGATGTGATG
GCGGGGGGGAGGAGGGGGGAGGTAGGAAGGGGGGGAGGAGGGGGGGCAGG
GGGGGCGATGACGATGAGGATGATGATGACGAGGAGGAGAGTAGTGACGA
GGACGGAAGGGGCATGCAGGCACAGAGGAAGAGCTTGAGGAAGAGGCGGC
AGGCGCTGGTAAGGGGAAGGGATGAGGGGGAGAGTGAAGAGGAGGATGAA
GAGGAGGTGGAGGATGAGAAGGAGGAGGACGATGACGACGACGACGACGA
GGACGAGGACGAGGAGCAGCAGGTGGTGCGACGGCGAAGGGGAGGAGGGG
GAGGGGAAGGGGAGGGGGTGGGGGAGGAAGAGGAAGAGGGAGAGTCGAAG
AAGCCGGGAGTGGAGCTGCTGCAGGAGGAGAGCAGTGACGAGGATGATGA
CGATGACAGCGATGATGGCGATGACAGCGACTAGGCCGTACGTGGAAGGA
GGGAGGGAATGAGGGAGGGAGGATGTGGATCCCGAGAGGGAGAAGAAGGA
AGATATAAGGCGACAGGCGCGCTGGGCCCCTCTCCATCAAATGGATGGAG
CAGGCAAACGATCGGGCTACGGTGAGAGGGAAAAAAAGGGAGAAGATGAA
GGAGGAGAAGGTGGGGAAGAAATGGAGAAGTAAAACGAAATTCTTTCCGG
TTTCGCGCGCTTTTGCTTGACAGGAAGACAAAGCAATAGGTAAAGAAAGG
TAAAGAAAGAGGAAAATGGAGAAGCAAAACAGAGAGGGGCCATTGGATCG
TCATCTTTATCTTTATGTTGTAGCTACCGTTGAGTGCCACCACGGACCGC
AAACCTCCAAAATTCAAAAATTCAAAACTCAAAATATTTTTTTCCGCCTT
CAATCAGTATGATTTGAATCTCGGACCGCCTCCCTGTCTCCCTCCCTCCC
TCCCGTGGGGATTGCTGCGTGGTCGTAGGTCTTCTCAGACGTACACACGC
GCATCCCCCCCACACCCGCACGCCCACGCCCACCCTGCTTGTTTCAATGA
TACAAATTATGTCCACACACTCTTCATCGTCATTTTACTTTCGTCGGCCT
CTTTTTTACCGACCTCTACCTCCCTCATCCCAAGGGAAGGTCCCTGCTAT
GATTGCTTCTGTCTTCCTCCCCCCCTCCCTCC
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protein sequence of NO11G03400.1

>NO11G03400.1-protein ID=NO11G03400.1-protein|Name=NO11G03400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MASNKKELDELGLGSDSEEDEQEEEQAVPPPPADETSPSAAAATEAKGGL
EAAIEASIPEPPLPARSMMSARIDTLGLGSSSEEEEEEEEEDGDGGERNV
LPSSATDLGRQTRSEARIAAAEPVVVTVPLVPRLPPKTQAIHVSLNPLFV
GVQFKESSDKGLAVEWAQGPKGRRGSNCIRWRFQRDENGKVKTDPFTGRP
LMESNARLVCWPDGSRQLLLGRQRLECQATAIGERRLLVDQGLREGGTEG
GPKRYLEPVAMIQEKMILQRESVGGKGGGRAGRRRSGLAGREIEKKATIK
KFESVMDPEREKEMKRRQRDEEDRLERKQKRKAAAFGGRLTKGFLEDEEE
IDPSSNVKRIKADVMAGGRRGEVGRGGGGGAGGAMTMRMMMTRRRVVTRT
EGACRHRGRA*
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Synonyms
Publications