NO11G03340, NO11G03340 (gene) Nannochloropsis oceanica

Overview
NameNO11G03340
Unique NameNO11G03340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1563
Alignment locationchr11:1067229..1068791 +

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquitin supergroup
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1067229..1068791 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
IPR022617Rad60/SUMO-like_dom
Homology
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BLAST of NO11G03340 vs. NCBI_GenBank
Match: EWM24860.1 (Ubiquitin supergroup [Nannochloropsis gaditana])

HSP 1 Score: 132.1 bits (331), Expect = 5.000e-27
Identity = 70/179 (39.11%), Postives = 103/179 (57.54%), Query Frame = 0 
Query:  342 RVAADDDKVVLWLQMKGHKMQGYKIFKTHLFVTSFEQFALAKGLDIDALTFTFKGDEISKLDQPRYVGMACCGEEGEKDNXXXXXXXXXXXXXXXXEAELMKNAAKTVKIVLQWQGGQQEVEMKMRDTFGLLRAKFAEEKKVDASRVRFVFDGEDLGEHDTPETFDMEDEDKVDVFGLT 521
            +    +DKV+L + M+G ++Q ++++   +    F+ +A  KGL  + LTF+++G E+   DQPRYVGM      G+  +                +      A+KTV +VLQWQGGQ+ V MKM+ +FG L+   A +K VD + VRFVFDG  L    TPE  +MEDED VDV+GL+
Sbjct:  268 KATTTEDKVMLKVGMQGRQLQPFRVYTYSMLSDVFDAYARIKGLRSEDLTFSYQGMELEGFDQPRYVGMVA----GDDPSAAGNIIYVQDRAALAAKTAQALAASKTVNLVLQWQGGQENVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVYGLS 442
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BLAST of NO11G03340 vs. NCBI_GenBank
Match: XP_005852790.1 (small ubiquitin-like modifier-1 [Nannochloropsis gaditana CCMP526] >EKU23041.1 small ubiquitin-like modifier-1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 131.7 bits (330), Expect = 6.500e-27
Identity = 70/179 (39.11%), Postives = 102/179 (56.98%), Query Frame = 0 
Query:  342 RVAADDDKVVLWLQMKGHKMQGYKIFKTHLFVTSFEQFALAKGLDIDALTFTFKGDEISKLDQPRYVGMACCGEEGEKDNXXXXXXXXXXXXXXXXEAELMKNAAKTVKIVLQWQGGQQEVEMKMRDTFGLLRAKFAEEKKVDASRVRFVFDGEDLGEHDTPETFDMEDEDKVDVFGLT 521
            +    +DKV+L + M+G ++Q ++++   +    F+ +A  KGL  + LTF+++G E+   DQPRYVGM      G+                   +      A+KTV +VLQWQGGQ+ V MKM+ +FG L+   A +K VD + VRFVFDG  L    TPE  +MEDED VDV+GL+
Sbjct:  268 KATTTEDKVMLKVGMQGRQLQPFRVYTYSMLSDVFDAYARIKGLRSEDLTFSYQGMELEGFDQPRYVGMVA----GDDPRAAGNIVYVQDRAALAAKTAQALAASKTVNLVLQWQGGQENVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVYGLS 442
The following BLAST results are available for this feature:
BLAST of NO11G03340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24860.15.000e-2739.11Ubiquitin supergroup [Nannochloropsis gaditana][more]
XP_005852790.16.500e-2739.11small ubiquitin-like modifier-1 [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03340.1NO11G03340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591895gene_5251Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100381g1gene5625Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03340.1NO11G03340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03340 ID=NO11G03340|Name=NO11G03340|organism=Nannochloropsis oceanica|type=gene|length=1563bp
ATGCCATCGTCGCCACATTCGAATGACTTATCGGACAAGGAAGGGGACAA
GGAAGAAGTCTTGGACGGGGGCGGCATATTTTCCTATAAGCCCGTGGAAC
GGAAGAAGAAGGGAGGCAGCGGTAGTGGCGGAAGTAGCAGCAGCGAGGAG
GAAGAGGAGGAATCGGAGATGGACGACCACCTTCTGAAAGGATCGTCGCA
GCAGCGGAAAAATAGGGTTGGAACGCGGAAACGCAGTCGTGCATGTACTG
GGGGAGGGAGGGGGGAGTTGCCTTCGCGCCAGGAGAAGGCTGTGGTGGCA
TTGGACGAAGAGGAGGACAGTGACGACGATGTGGTGGTGCTGGTACCAAG
CGGAGGCGGAGGATGCAGAGACAAAATAGGGAATGGGGCGTCGAAAAAAA
AAGTAGGTGGTAAGGAGGAGGAAGAGGAAGATGTGGACATTGCGACATTT
TTGACAGGGAACGTAGACGAAGAGTTGGCCCGGCTACAGGCAGAAGCAGC
AGCAGCAGTGGGAGGTAATCCTACAGGAGAAGGAGGAGGAGGAGGAGGGA
GGGGGAGGGGAGAAGGGGAAGGAGTAGAAAATAAGGAAGAATTACCTGCC
AAGGGGCGAGGCGCGCGGGGTCGGAATCGCCGGGGTTGGGGAGGGGCTCA
AGGGAAAGGAAAAGTATCGTCGGCTAATAGGAAGGATGGAGCTACTGCTG
TAACTCCTGCTACTACTACCGCTCCTCCTGGTGCAGTTGCTACTGTGGCG
GCGGCATCGGGGGGAATGACGGGGGAGGAGGAGGCAAGACAGGCGACGAG
AAAGGCGAGATTAGAGAAGTTGAGGGCAGAGGCGCTGGAGGTGGAGGCTG
AGCTGCAGTTGGCCAAGGAGGGCGTGGAAGAGGAAGGGGAGGGGCAAGGG
GGGAGGAAGAAAGGGGGTGGAAGAGGGAGGGGTGGCGGTGGTGGTGGAAG
GATGCGAGATGGCGCGACGGATTCGGCGGCCACTATAGCAGGGGGAGGAG
GAGGAGAAATCAGGAGCGAGGGTCGAGTGGCGGCAGATGATGATAAGGTG
GTATTGTGGCTGCAGATGAAGGGACACAAGATGCAAGGCTACAAGATATT
TAAGACTCACTTGTTCGTGACCAGCTTCGAGCAATTCGCCTTGGCCAAGG
GGCTAGATATTGATGCCCTTACCTTTACCTTCAAGGGCGACGAGATTTCC
AAGCTAGATCAACCGCGGTATGTGGGCATGGCCTGTTGCGGGGAGGAGGG
AGAAAAAGACAACATTGTGGTTGTGACAGATAAGAAGAGAGCTGCAGCTG
CGCGGGCTGCGGAGGCGGAGCTGATGAAGAATGCGGCCAAGACGGTAAAG
ATTGTGTTGCAGTGGCAGGGAGGGCAGCAGGAGGTGGAGATGAAGATGCG
GGACACCTTTGGATTGCTGCGGGCGAAATTCGCAGAGGAGAAGAAGGTGG
ATGCGAGTAGAGTGCGGTTTGTGTTTGACGGGGAGGACTTGGGCGAGCAC
GACACGCCAGAGACGTTTGACATGGAGGACGAGGACAAGGTAGATGTGTT
TGGGTTGACTTAA
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protein sequence of NO11G03340.1

>NO11G03340.1-protein ID=NO11G03340.1-protein|Name=NO11G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MPSSPHSNDLSDKEGDKEEVLDGGGIFSYKPVERKKKGGSGSGGSSSSEE
EEEESEMDDHLLKGSSQQRKNRVGTRKRSRACTGGGRGELPSRQEKAVVA
LDEEEDSDDDVVVLVPSGGGGCRDKIGNGASKKKVGGKEEEEEDVDIATF
LTGNVDEELARLQAEAAAAVGGNPTGEGGGGGGRGRGEGEGVENKEELPA
KGRGARGRNRRGWGGAQGKGKVSSANRKDGATAVTPATTTAPPGAVATVA
AASGGMTGEEEARQATRKARLEKLRAEALEVEAELQLAKEGVEEEGEGQG
GRKKGGGRGRGGGGGGRMRDGATDSAATIAGGGGGEIRSEGRVAADDDKV
VLWLQMKGHKMQGYKIFKTHLFVTSFEQFALAKGLDIDALTFTFKGDEIS
KLDQPRYVGMACCGEEGEKDNIVVVTDKKRAAAARAAEAELMKNAAKTVK
IVLQWQGGQQEVEMKMRDTFGLLRAKFAEEKKVDASRVRFVFDGEDLGEH
DTPETFDMEDEDKVDVFGLT*
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Synonyms
Publications