NO11G03270, NO11G03270 (gene) Nannochloropsis oceanica

Overview
NameNO11G03270
Unique NameNO11G03270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2094
Alignment locationchr11:1024185..1026278 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1024185..1026278 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO11G03270 vs. NCBI_GenBank
Match: EWM24873.1 (hypothetical protein Naga_101100g1 [Nannochloropsis gaditana])

HSP 1 Score: 162.9 bits (411), Expect = 1.900e-36
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0 
Query:  129 PSLIEDILRRLRGDFSHPLSDSTRLVVHYDCRDYRSGLRGLGLRHVWRDVGQTFLEEEGEEEEGM--EGVGRGGRKAGWKAWVFPWEIRGGMSVKRIHGVGIPQFWRMGRL 238
            PSL+E+ILRRLRGDFSHPL++STRLVVHYDCRDYRSGLRGLGLRHVWRDVG + L +E    +      +G    + GW+ W FPWEIRGG+SVKRI GV +PQFWRM R+
Sbjct:   85 PSLLEEILRRLRGDFSHPLTESTRLVVHYDCRDYRSGLRGLGLRHVWRDVGLSLLSDEDTATDAALPMSLGPALGEQGWRTWCFPWEIRGGVSVKRIQGVSVPQFWRMRRV 195
The following BLAST results are available for this feature:
BLAST of NO11G03270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24873.11.900e-3667.57hypothetical protein Naga_101100g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03270.2NO11G03270.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G03270.1NO11G03270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101100g1gene5614Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03270.2NO11G03270.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G03270.1NO11G03270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03270 ID=NO11G03270|Name=NO11G03270|organism=Nannochloropsis oceanica|type=gene|length=2094bp
ATTGTGGCTGAGAAGTGTGATCTGCGGTGGTGTAGAGGTAGAGGTGTAGG
TGGGTTTTAGAGACTGAAAGCCGTCCTGATCATCGTCATCTCCAGCAACG
TCCTGAGGCGTGTCATATTATTCTTATCTGACGAGTGGAGCACAATCCCA
TCTGTTACGAACAGAGCACCGCGGGGAGGATGTCTGTGGGTCACAGACAC
GCTGCTGATAAGCGCTTTGCGGCTTGATGTGTGGCATTCACCGTCACAGG
AGCCAAAACTCGCCAACCGGCGTCGAGCTTGGCGATGCACACAAAGCAAC
CAGCAATTGTCCCCTGCAAGCACCTTCATCCCCCTTTTTTACTTCCCTTC
ACGCTCACTTTCAGGGAATGAGACACATGTCACGAGAAAGACGAGCTGGA
GGGGTTTCCTGCCAGGGTTTTATCGCCACAGCGTTCCTCCTGGCCCTCCT
TCCATCTCCCTCTCGCGCGACGTTTGGCCTCACTTCCCGCCGCACGGCTT
CTCCCCCTCCACCCCCTCCCCTTCCTGCAACACCACCGACACCTCTTGCG
CCTATAACGCACGCCAGTTCCTTGTCCCGTAAGGGCAAAGACGACGATGA
CGACAAGTCTCCTTCCCTCATCGAAGACATTCTGCGCCGGCTCCGAGGGG
ACTTCTCCCACCCCCTGTCGGACTCAACTCGCCTGGTCGTTCACTACGAC
TGTCGAGATTACCGCTCGGGCCTCCGGGGGCTAGGACTTAGGCATGTCTG
GCGGGATGTGGGTCAGACGTTCTTGGAGGAGGAGGGGGAGGAGGAGGAAG
GGATGGAGGGGGTTGGGAGAGGAGGGAGGAAGGCCGGGTGGAAGGCGTGG
GTGTTCCCGTGGGAGATACGGGGAGGCATGTCAGTGAAGAGGATCCATGG
CGTGGGCATACCGCAATTTTGGCGGATGGGACGGgtgagtgctcgttcgt
tgggtgggtagaggtggatatggaatgccggcatctcacccgccctcccc
tccttccctccctccccccctccctgcctttgtgtctcgctccctacaca
gCTCGACCGCCTCTTATGGGGATCCGTCCACGCGATCTCTCTTCCTACGT
CCACCTCCGTGGGCGCCGCATTCGACGGGGCTTCCCAACACATGCGGTTT
GAAATGTCGCATGCTACGGCTCTCTCCCTCCCCTTCCTCGACAAGGAGGG
GGAGTGGGGATTCTTGGACGGGCTGCCTATTCGAATGACGCTCAGCCCTT
TACTGGCACGGCGGCCAATTAATCTGAGgtaggtaggttgcatgaaagtg
aggagagtgagagggagggagggagggaggggagggtggacagcaaggca
tgacgcgtggaatcaattgttgaccgactcttccttccctccttcccttc
ctccttctcacaaaataacagTGCGGCGATCCCCCGTCGTCCTGCCTTCC
ATCCATCCGTGGACCTCCTGTCCCTCGGCCTGGGTTGCGAGTGGGTCGAG
CCCATGGTGGGAGGGTGGGAGGGAGGGAGGGGAGGAGGAAAGGAGGGAGA
AAAAGGTGTGGCGGCGGTGCGGTTCGGGATTTCGGCACGGTCTCTCCGgt
aagatggcgtatcaaaacggaaggttccacagtatatgcactcttactca
ccttgtcttcccttaatcctccctccctcccctctatctccctccctacc
tccctcctcgttccagCCCCGGTGGCACCCTGCGAATCTCATGGCAAGAC
TCCCGCTTGCTGGATGGGAAGGGCCTCTCCACTGCTACCCTCTACATGCC
AATAACCTCTCTTGGCCCCTCTGAGCGTCCGTGGAGGCATGCGTCAGTGT
CGCTGGAGCACACGTGGCAGCTCCCGTGGCTGGAGGGGGGTTGGAGGAGG
TGGGGGAGGAGGGGAGAGGGGGAGGAGTAGAGGGAGGGAATGATGTGTAT
AAAAGATGAAAGGACGGGGGGGTAGATAGGAGGGTTGTGTAGAGAGGATG
GAAAGAGAGGAGGCGGAGGGTAAGGGTTGAGAAGGGAAAAGGAGTCGGCG
ATCAAAAGTATTCGGCAGGGTGCAACAACGTCTTATGAGGGCCT
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protein sequence of NO11G03270.2

>NO11G03270.2-protein ID=NO11G03270.2-protein|Name=NO11G03270.2|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MCGIHRHRSQNSPTGVELGDAHKATSNCPLQAPSSPFFTSLHAHFQGMRH
MSRERRAGGVSCQGFIATAFLLALLPSPSRATFGLTSRRTASPPPPPPLP
ATPPTPLAPITHASSLSRKGKDDDDDKSPSLIEDILRRLRGDFSHPLSDS
TRLVVHYDCRDYRSGLRGLGLRHVWRDVGQTFLEEEGEEEEGMEGVGRGG
RKAGWKAWVFPWEIRGGMSVKRIHGVGIPQFWRMGRLDRLLWGSVHAISL
PTSTSVGAAFDGASQHMRFEMSHATALSLPFLDKEGEWGFLDGLPIRMTL
SPLLARRPINLSAAIPRRPAFHPSVDLLSLGLGCEWVEPMVGGWEGGRGG
GKEGEKGVAAVRFGISARSLR*
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protein sequence of NO11G03270.1

>NO11G03270.1-protein ID=NO11G03270.1-protein|Name=NO11G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MCGIHRHRSQNSPTGVELGDAHKATSNCPLQAPSSPFFTSLHAHFQGMRH
MSRERRAGGVSCQGFIATAFLLALLPSPSRATFGLTSRRTASPPPPPPLP
ATPPTPLAPITHASSLSRKGKDDDDDKSPSLIEDILRRLRGDFSHPLSDS
TRLVVHYDCRDYRSGLRGLGLRHVWRDVGQTFLEEEGEEEEGMEGVGRGG
RKAGWKAWVFPWEIRGGMSVKRIHGVGIPQFWRMGRLDRLLWGSVHAISL
PTSTSVGAAFDGASQHMRFEMSHATALSLPFLDKEGEWGFLDGLPIRMTL
SPLLARRPINLSAAIPRRPAFHPSVDLLSLGLGCEWVEPMVGGWEGGRGG
GKEGEKGVAAVRFGISARSLRPGGTLRISWQDSRLLDGKGLSTATLYMPI
TSLGPSERPWRHASVSLEHTWQLPWLEGGWRRWGRRGEGEE*
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Synonyms
Publications