NO11G03150, NO11G03150 (gene) Nannochloropsis oceanica

Overview
NameNO11G03150
Unique NameNO11G03150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1446
Alignment locationchr11:989321..990766 +

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Properties
Property NameValue
DescriptionThioredoxin-like protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:989321..990766 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
IPR010400PITH_dom
Homology
BLAST of NO11G03150 vs. NCBI_GenBank
Match: XP_005855009.1 (thioredoxin-like protein 1 [Nannochloropsis gaditana CCMP526] >EKU21349.1 thioredoxin-like protein 1 [Nannochloropsis gaditana CCMP526] >EWM24889.1 thioredoxin-like protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 252.7 bits (644), Expect = 7.600e-64
Identity = 124/143 (86.71%), Postives = 136/143 (95.10%), Query Frame = 0
Query:   14 DPKYPWDNLFMGDDRLQLRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKIQKQGQQ 157
            DPKYPW+NLFMGDDRLQLRSDTDEQL+LHLVFSE+VKVHS+NLVAPE +AAP TVKLYLNKTSFSFDDAE+IEPTQVLELTEED+K +KVTLLKFVKFQRVSSLTIF+E+N GA+YTALS LRLFGTPLQGTDV+KIQKQ  Q
Sbjct:   35 DPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQKQPAQ 177          
BLAST of NO11G03150 vs. NCBI_GenBank
Match: XP_009530460.1 (hypothetical protein PHYSODRAFT_334858 [Phytophthora sojae] >EGZ13031.1 hypothetical protein PHYSODRAFT_334858 [Phytophthora sojae])

HSP 1 Score: 160.2 bits (404), Expect = 5.200e-36
Identity = 73/144 (50.69%), Postives = 107/144 (74.31%), Query Frame = 0
Query:   13 QDPKYPWDNLFMGDDRLQLRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKIQKQGQQ 157
            +DP  P+ NLFMGD+ LQL+SD DEQL+L++ F ++VKV S+N+VAP+ + AP  +KL++N+ +  F DA  +EPTQ +EL EED  P+    L+FVKFQRV S+T+F+E N GAE TA+S L+ FG  L GT++N+++K  ++
Sbjct:   60 EDPNKPFGNLFMGDETLQLKSDADEQLMLYIEFQDAVKVFSLNIVAPQGEEAPRVIKLFVNRPNLGFSDAGDVEPTQTIELKEEDLLPENDVELRFVKFQRVKSITVFVEENNGAEETAISSLKFFGERLAGTNMNELKKVSEE 203          
BLAST of NO11G03150 vs. NCBI_GenBank
Match: GAY04450.1 (thioredoxin-like protein, putative [Pythium insidiosum])

HSP 1 Score: 160.2 bits (404), Expect = 5.200e-36
Identity = 77/142 (54.23%), Postives = 106/142 (74.65%), Query Frame = 0
Query:   13 QDPKYPWDNLFMGDDRLQLRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTE--EDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKIQK 153
            + P +P+ NLFMGDD L L+SD DEQL+LH+ F ++VK+HS++LVAP  + AP  +KLY N+ +  F DA  +EPTQ +EL++  E  KP K   L+FVKFQRV SLTIF+E N GAE TAL+ L+LFG P+ GT++N+++K
Sbjct:   33 EHPSFPFANLFMGDDTLLLKSDADEQLILHIEFQDAVKLHSLHLVAPAGETAPRVIKLYANRANLGFSDAGDVEPTQTIELSDPAELAKPGKDIELRFVKFQRVKSLTIFVEENHGAEDTALANLKLFGEPIAGTNMNELKK 174          
BLAST of NO11G03150 vs. NCBI_GenBank
Match: GAX93845.1 (thioredoxin-like protein, putative [Pythium insidiosum])

HSP 1 Score: 160.2 bits (404), Expect = 5.200e-36
Identity = 77/142 (54.23%), Postives = 106/142 (74.65%), Query Frame = 0
Query:   13 QDPKYPWDNLFMGDDRLQLRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTE--EDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKIQK 153
            + P +P+ NLFMGDD L L+SD DEQL+LH+ F ++VK+HS++LVAP  + AP  +KLY N+ +  F DA  +EPTQ +EL++  E  KP K   L+FVKFQRV SLTIF+E N GAE TAL+ L+LFG P+ GT++N+++K
Sbjct:   33 EHPSFPFANLFMGDDTLLLKSDADEQLILHIEFQDAVKLHSLHLVAPAGETAPRVIKLYANRANLGFSDAGDVEPTQTIELSDPAELAKPGKDIELRFVKFQRVKSLTIFVEENHGAEDTALANLKLFGEPIAGTNMNELKK 174          
BLAST of NO11G03150 vs. NCBI_GenBank
Match: XP_002900261.1 (thioredoxin-like protein, putative [Phytophthora infestans T30-4] >EEY60465.1 thioredoxin-like protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 157.5 bits (397), Expect = 3.300e-35
Identity = 73/140 (52.14%), Postives = 103/140 (73.57%), Query Frame = 0
Query:   13 QDPKYPWDNLFMGDDRLQLRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKIQK 153
            +DP  P+ NLF GDD L L+SD DEQL+L+L F ++VK+ S+N+VAP+ + AP  +KLY+N+ +  F DA  +EPTQ +EL EED  P+    L+FVKFQRV S+++F+E N GAE T LS L+ FG PL GT++N+++K
Sbjct:   30 EDPNKPFRNLFAGDDSLVLKSDADEQLMLYLEFQDAVKIFSLNIVAPQGEEAPRVIKLYVNRPNLGFSDAGDVEPTQTIELKEEDLLPENDVELRFVKFQRVKSVSVFVEENYGAEETVLSSLKFFGEPLAGTNMNELKK 169          
BLAST of NO11G03150 vs. NCBI_GenBank
Match: POM65800.1 (Thioredoxin-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 157.5 bits (397), Expect = 3.300e-35
Identity = 72/140 (51.43%), Postives = 104/140 (74.29%), Query Frame = 0
Query:   13 QDPKYPWDNLFMGDDRLQLRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKIQK 153
            +DP  P+ NLFMGD+ L L+SD DEQL+L++ F ++VKV S+N+VAP+ D AP  VKLY+N+ +  F DA  +EPTQ +EL+EED  P+    L+FVKFQRV ++T+F+E N GA+ T +S L+ FG  L GT++N+++K
Sbjct:   29 EDPNKPFGNLFMGDETLTLKSDADEQLMLYIEFQDAVKVFSLNIVAPKGDEAPRVVKLYVNRPNLGFSDAGDVEPTQTIELSEEDLLPENDVELRFVKFQRVKNITVFVEENNGADETVISSLKFFGERLAGTNMNELKK 168          
BLAST of NO11G03150 vs. NCBI_GenBank
Match: CBN77301.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 156.4 bits (394), Expect = 7.400e-35
Identity = 75/134 (55.97%), Postives = 95/134 (70.90%), Query Frame = 0
Query:   19 WDNLFMGDDRLQLRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKIQK 153
            W+NLF GDDRL L+SD DEQL+LH+ F E+VK+HS++ VAP  D AP TVKLYLN+ S  F D + + P Q LELT+ED      ++LKFVKFQRVS L+IF+  N GAE + LS LR FGTP+  T +   +K
Sbjct:   46 WENLFQGDDRLMLQSDADEQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSIFVADNNGAEQSCLSSLRFFGTPVATTKMGDFKK 179          
BLAST of NO11G03150 vs. NCBI_GenBank
Match: XP_008899679.1 (hypothetical protein PPTG_07263 [Phytophthora parasitica INRA-310] >ETI54805.1 hypothetical protein F443_02444 [Phytophthora parasitica P1569] >ETK94664.1 hypothetical protein L915_02330 [Phytophthora parasitica] >ETL48063.1 hypothetical protein L916_02288 [Phytophthora parasitica] >ETM54340.1 hypothetical protein L914_02315 [Phytophthora parasitica] >ETN15054.1 hypothetical protein PPTG_07263 [Phytophthora parasitica INRA-310] >ETO83571.1 hypothetical protein F444_02431 [Phytophthora parasitica P1976] >ETP24642.1 hypothetical protein F441_02395 [Phytophthora parasitica CJ01A1] >ETP52605.1 hypothetical protein F442_02411 [Phytophthora parasitica P10297] >KUF84218.1 Thioredoxin protein 1 [Phytophthora nicotianae] >KUF91696.1 hypothetical protein AM588_10004095 [Phytophthora nicotianae])

HSP 1 Score: 154.8 bits (390), Expect = 2.200e-34
Identity = 72/140 (51.43%), Postives = 102/140 (72.86%), Query Frame = 0
Query:   13 QDPKYPWDNLFMGDDRLQLRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKIQK 153
            ++P  P+ NLFMGDD L L+SD DEQL+L+L F ++VKV S+N+VAP+ + AP  +KLY+N+    F DA  ++PTQ +EL +ED  P+    L+FVKFQRV SLT+F+E N GAE T +S L+ FG  L GT++N+++K
Sbjct:   30 ENPNKPFRNLFMGDDSLVLKSDADEQLMLYLEFQDAVKVFSLNIVAPQGEEAPRVIKLYVNRPHLGFSDAGDVDPTQTIELKDEDLLPENDVELRFVKFQRVKSLTVFVEENNGAEETVISSLKFFGERLAGTNMNELKK 169          
BLAST of NO11G03150 vs. NCBI_GenBank
Match: ETM01159.1 (hypothetical protein L917_02222 [Phytophthora parasitica])

HSP 1 Score: 154.8 bits (390), Expect = 2.200e-34
Identity = 72/140 (51.43%), Postives = 102/140 (72.86%), Query Frame = 0
Query:   13 QDPKYPWDNLFMGDDRLQLRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKIQK 153
            ++P  P+ NLFMGDD L L+SD DEQL+L+L F ++VKV S+N+VAP+ + AP  +KLY+N+    F DA  ++PTQ +EL +ED  P+    L+FVKFQRV SLT+F+E N GAE T +S L+ FG  L GT++N+++K
Sbjct:   29 ENPNKPFRNLFMGDDSLVLKSDADEQLMLYLEFQDAVKVFSLNIVAPQGEEAPRVIKLYVNRPHLGFSDAGDVDPTQTIELKDEDLLPENDVELRFVKFQRVKSLTVFVEENNGAEETVISSLKFFGERLAGTNMNELKK 168          
BLAST of NO11G03150 vs. NCBI_GenBank
Match: XP_009833648.1 (hypothetical protein H257_09203 [Aphanomyces astaci] >ETV76736.1 hypothetical protein H257_09203 [Aphanomyces astaci])

HSP 1 Score: 154.5 bits (389), Expect = 2.800e-34
Identity = 71/145 (48.97%), Postives = 107/145 (73.79%), Query Frame = 0
Query:   13 QDPKYPWDNLFMGDDRLQLRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKIQKQGQQN 158
            +DP + + NLF+GD+ L L+S+ DEQL++HL F E+VK+HS++L AP+ D+AP+ VKL++N+ +  F D   IEPTQ L+ T++  +      L+FVKFQRV+SLTIF+E N G E +ALS L+LFG  +QGT++N ++ QG ++
Sbjct:   23 EDPSFGYGNLFIGDESLVLKSEADEQLLIHLEFKEAVKIHSISLKAPKDDSAPSVVKLFVNRNNLGFSDVTDIEPTQKLDWTQDQLQSGTPVELRFVKFQRVTSLTIFVEENHGGEISALSSLKLFGESIQGTNMNDLKSQGHEH 167          
The following BLAST results are available for this feature:
BLAST of NO11G03150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855009.17.600e-6486.71thioredoxin-like protein 1 [Nannochloropsis gadita... [more]
XP_009530460.15.200e-3650.69hypothetical protein PHYSODRAFT_334858 [Phytophtho... [more]
GAY04450.15.200e-3654.23thioredoxin-like protein, putative [Pythium insidi... [more]
GAX93845.15.200e-3654.23thioredoxin-like protein, putative [Pythium insidi... [more]
XP_002900261.13.300e-3552.14thioredoxin-like protein, putative [Phytophthora i... [more]
POM65800.13.300e-3551.43Thioredoxin-like protein [Phytophthora palmivora v... [more]
CBN77301.17.400e-3555.97conserved unknown protein [Ectocarpus siliculosus][more]
XP_008899679.12.200e-3451.43hypothetical protein PPTG_07263 [Phytophthora para... [more]
ETM01159.12.200e-3451.43hypothetical protein L917_02222 [Phytophthora para... [more]
XP_009833648.12.800e-3448.97hypothetical protein H257_09203 [Aphanomyces astac... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001933NSK001933Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03150.1NO11G03150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G03150.2NO11G03150.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G03150.3NO11G03150.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591796gene_5227Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100116g2gene5601Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03150.1NO11G03150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G03150.2NO11G03150.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G03150.3NO11G03150.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03150 ID=NO11G03150|Name=NO11G03150|organism=Nannochloropsis oceanica|type=gene|length=1446bp
ATCACAGACGAGCAAACGATGGAAGAAGGTCCACCACCCCCGCCACCCCC
GCCCTCAAACGAGATTGTGGATATAACCGACAAGATTGCCAAGTCGGAGT
GTTTTGTGTTGAACGCGgtaggtgtgagagagttcgacagggtgtgtcag
gagggcaggatggagacagagggggcagggagtgaggttctaggcaagct
agtcggcatcgtgatgtaaagggagcggtataacgactataggacgggtg
tctgcatttgcttcggttccttccatggtccttttccgtaagcgccgtta
tccccacatgctatccctcctttcgtcacccgccccccctttccctctct
ctcttttcctcctcacccaaacaattagaaagacggcatttcgatcacct
ctatattcatcagcagtatgccgccgtccttacgcgtatgcgtcccttcc
tcccctcccttcctttccacacccagGATCCCAAGTACCCGTGGGACAAC
CTATTTATGGGCGATGATCGTCTTCAGCTCCGATCTGATACCGACGAGCA
ATTGGTGTTGCATTTGGTGTTTTCTGAATCAGTGAAAGTGCATAGCATGA
ATCTTGTCGCGCCAGAGCCAGgtacattggatgggtatgcgtgagggatt
gtcgcctcatgtatcataactgacctctttcctccctttctcatcacacg
cccgcccgccattccccccccccccacccatccacccccccaaatcccta
cccccccacccccccacccacatacatatatacacatatacatacagACG
CGGCCCCTACCACGGTAAAGCTGTACTTGAATAAGACCTCCTTCTCCTTC
GATGACGCCGAGAGTATCGAGCCCACGCAGGTACTGGAGCTGACCGAGGA
GGATCACAAGCCCGACAAGgtatatatataaaggagggagggagggaggg
agggaaggaggtttaggactttggctacttgaacgaaaatggatgtccgg
aatcatttttcatttgaaagaagcgtcgtggactggatggcattgacccc
tacctccctccctccctcccgcgagtgcagGTGACGCTGCTGAAATTCGT
CAAGTTCCAGCGCGTCTCCTCACTGACCATATTCATCGAGAGCAACGGGG
GCGCTGAATACACAGCTCTATCCAAGCTTCGATTGTTTGGCACGCCGCTG
CAAGGCACCGACGTGAACAAGATCCAGAAGCAGGGGTAAGTGGGCGAGGG
GGAGGGAGGGAGAGGCGTGAAATGTGGGACTGATGGGTTGCGCCTTTTTG
TCTTTTTATTTTTATCACAGGCAACAAAATTAAGGCCTGCAAGGGTGAGG
AAGAGGGGGAAAAGAGGTGTGTGGAGAGAGGGAGAGAGGGCGCTTGCCCA
CTATCTGAGATGCTTTAAAAGAAAAAGAATTGGACGAGAAACATCT
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protein sequence of NO11G03150.1

>NO11G03150.1-protein ID=NO11G03150.1-protein|Name=NO11G03150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MEEGPPPPPPPPSNEIVDITDKIAKSECFVLNADPKYPWDNLFMGDDRLQ
LRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFD
DAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYT
ALSKLRLFGTPLQGTDVNKIQKQGQQN*
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protein sequence of NO11G03150.2

>NO11G03150.2-protein ID=NO11G03150.2-protein|Name=NO11G03150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MEEGPPPPPPPPSNEIVDITDKIAKSECFVLNADPKYPWDNLFMGDDRLQ
LRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFD
DAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYT
ALSKLRLFGTPLQGTDVNKIQKQG*
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protein sequence of NO11G03150.3

>NO11G03150.3-protein ID=NO11G03150.3-protein|Name=NO11G03150.3|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MRPFLPSLPFHTQDPKYPWDNLFMGDDRLQLRSDTDEQLVLHLVFSESVK
VHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTEEDHKP
DKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKI
QKQGQQN*
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Synonyms
Publications