NO11G03000, NO11G03000 (gene) Nannochloropsis oceanica

Overview
NameNO11G03000
Unique NameNO11G03000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4920
Alignment locationchr11:940490..945409 -

Link to JBrowse

Properties
Property NameValue
DescriptionDNA LIGASE 6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:940490..945409 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003677DNA binding
GO:0003910DNA ligase (ATP) activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006310DNA recombination
GO:0009987cellular process
GO:0008152metabolic process
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036599DNA_ligase_N_sf
IPR012340NA-bd_OB-fold
IPR012309DNA_ligase_ATP-dep_C
IPR012310DNA_ligase_ATP-dep_cent
IPR012308DNA_ligase_ATP-dep_N
Homology
[Close]
BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_006482181.1 (PREDICTED: DNA ligase 1 isoform X1 [Citrus sinensis])

HSP 1 Score: 542.7 bits (1397), Expect = 2.100e-150
Identity = 283/683 (41.43%), Postives = 405/683 (59.30%), Query Frame = 0 
Query:  196 VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLST--RGRKD--VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            V LP  +Y P    CWS GQ APY+HLA  F+L+ +   ++    +L NMFRSL+AL+PDDVLPAVYL +NK+AS+ E I++N+GGS V++A+  A GT+  K++ +Y  LGDLGDVAQ  R  Q LL  P PL ++ VY  +  ++   G G   RK+ ++V L+ SCR  E KFLVRTLV+NLR GA +                                                       YN  P +  ++ +L+  G+    +   +  G P+KPMLAKI +G+P++++ + ++ FTCE+KYDGQRAQ+H L DG+V+IF+R+ ++ T ++PD++ ++++  +    +                 ILD E+VA+DR  G K+++FQ LS+  RG KD  +T + V V ICVF FD++F NG+  L   L  RR  L  LF     G                     +        K+  F  EAL + CEGI+ KSL  +  Y PSKR++SWLKVK+DY+EGL+D+LDLVPIGAW+GNGRKAGW+SP L+ACYNPETEE QS+CR MSG +D+ Y +  +F+  +  ++  P SY RT E   +WF P  VWEIRGA+ TISPVH+A +GLV   +G+S+RFPRF+++  D+  ++ +TAA IAE+F  Q R+++
Sbjct:  751 VSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLGNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQIGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMM-------------RTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSSSTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGT----------------FILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEGDDNCLTSDVS------LSKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKILLKKP-SYYRTAEVPDMWFSPEVVWEIRGADFTISPVHQAAIGLVHPSRGISIRFPRFIRLVSDRNPDECSTAADIAEMFHSQTRKMD 1397
[Close]
BLAST of NO11G03000 vs. NCBI_GenBank
Match: PHT91330.1 (hypothetical protein T459_06443 [Capsicum annuum])

HSP 1 Score: 542.7 bits (1397), Expect = 2.100e-150
Identity = 287/683 (42.02%), Postives = 402/683 (58.86%), Query Frame = 0 
Query:  196 VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGRKD----VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            V LP  +Y P    CWS+GQ APY+HLA  FEL+     ++    +L NMF SL+AL+P+DVLPAVYL +NK+A   E +++N+GGSTV AA+  A GT   ++++LY  LGDLGDVAQ  R  Q LL  P  LTVRGVY  +  ++   G G   RK+ ++V+L+ SCR  E KFLVRTLV+NLR GA +                                                       YN  P +  +V +L+E G+E       +A G P+KPMLAKI +G+P++++ + ++ FTCE+KYDGQRAQ+H L+DGSV++F+R+ ++ T ++PD+V ++ +      S  P            V  ILD E+VA+DR  G+KL++FQ LS+R R      +  + + V IC+F FD++F NG+  L   L  RR  L  LF     G                    AT        ++  F  +AL + CEGIM KSL  +  Y PSKR+++WLKVK+DY+EGL+D+LDLVPIGAWYGNGRKAGW+SP L+ACYNP+TEE QS+CR MSG +D+ Y +   F+ ++ +I      Y RT E   +WF P  VWEIRGA+ T+SPVH A +GLV   +G+S+RFPRF++   D+  E+ +T+A IAE+F  Q R+++
Sbjct:  773 VSLPPEKYSPVEHACWSKGQAAPYIHLARTFELVKEEKGKIKATSMLCNMFWSLLALSPEDVLPAVYLCTNKIAPDHENMELNIGGSTVVAALEEACGTKKSRVRELYNSLGDLGDVAQLCRQTQSLLAPPVALTVRGVYSALRRISLQAGSGSAIRKKSLIVKLMCSCREKEMKFLVRTLVRNLRIGAMM----------------RTVLPALAQAVVFNSIPHEGLVDNLKDCLQRLSAEAVEAYNILPSLDVLVPSLMEKGVEFSSNTLSMAPGIPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLADGSVRVFSRNGDETTSRFPDLVNIITE------SCGPRG----------VTFILDAEVVAIDRQNGSKLMSFQELSSRERGSKGSIIALDKIKVDICIFVFDIMFANGEQLLNLPLRQRRKYLKDLFGDGKVGYFEYATEMTVEDNDSCADDEAT------LARMNSFLNDALNSSCEGIMVKSLDLDAGYTPSKRSDAWLKVKRDYVEGLNDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPDTEEYQSVCRVMSGFSDSFYVEMRDFFDAD-KISQKKPPYYRTAEAPDMWFSPEVVWEIRGADFTVSPVHHAAIGLVHPSRGISVRFPRFIRCLSDRKPEECSTSADIAEMFHSQTRKMD 1416
[Close]
BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_012854511.1 (PREDICTED: LOW QUALITY PROTEIN: DNA ligase 3 [Erythranthe guttata])

HSP 1 Score: 541.2 bits (1393), Expect = 6.200e-150
Identity = 282/683 (41.29%), Postives = 399/683 (58.42%), Query Frame = 0 
Query:  196 VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLST--RGRKD--VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            V LP  RY P    CW +GQLAPYLH+A  F+L+     +L    +L NMFRSL+ALAP+DVLPAVYL +N++A   E I++N+G S V AA+    GT+  K+K LY  LGDLGDVAQ  R  Q LL  P PLT++ VY  +  ++   G G   +K+ +++ L+RSCR  E KFLVRTLV+NLR GA +                                                       YN  P++  ++ +L+E G+E   +   +  G P+KPMLAKI +G+P++++ +    FTCE+KYDGQR Q+H L+DGSV++F+R+ ++ T ++PD++ ++ D                      V  ILD E+VA+DR    KL++FQ LS+  RGRKD  +  + + V IC+F FD++F NG+  L   L  RR  L  LF     G                    AT        ++  F  +AL + CEG+M KSL  +  Y PSKR+++WLKVK+DY+EGL D+LDLVPIGAW+GNGRKAGWFSP L+ACYNP+TEE QS+CR MSG +DA Y +  +F+ +E R++     Y RT E   +WF P  VW+I+GA+ T+SPVH A +GLV   +G+S+RFPRF++   D+  E+ +T+A IA+LF +Q R+++
Sbjct:  734 VSLPPERYYPVKHACWRKGQLAPYLHIARTFDLVEEEKGKLKATSILCNMFRSLLALAPEDVLPAVYLCTNRIAPEHENIELNIGSSIVVAALEEVCGTNKSKIKNLYNSLGDLGDVAQLCRQTQSLLAPPAPLTIQEVYSALRKISVQTGTGSTTKKKSLIMNLMRSCREKEMKFLVRTLVRNLRIGAMM-----------------RTVLPALAQAIAMNSANEGVAGNSKDRIQRLSVAVVEAYNIIPNLDILIPSLMENGIEFSSSTLSIIPGIPIKPMLAKITNGVPQVLKSFEHRAFTCEYKYDGQRVQIHRLADGSVRVFSRNGDETTLRFPDLIDIVKD----------------SCINAAVTFILDAEVVAIDRKNNLKLMSFQELSSRERGRKDSLIDVDKIKVDICIFVFDIMFANGEQFLNLPLRQRRKHLKDLFGEEKPGYFEYAKEMTVETEDADVNNEATF------NRMNTFLEDALRSSCEGLMVKSLDVDAGYTPSKRSDAWLKVKRDYVEGLSDSLDLVPIGAWHGNGRKAGWFSPFLMACYNPDTEEYQSVCRVMSGFSDAFYIEMKEFFNTE-RVLSKKPPYYRTAEVPDMWFSPELVWQIKGADFTVSPVHHAAIGLVHPSRGISVRFPRFIRSVSDRKPEECSTSADIADLFSLQTRKMD 1376
[Close]
BLAST of NO11G03000 vs. NCBI_GenBank
Match: PRQ45643.1 (putative DNA ligase (ATP) [Rosa chinensis])

HSP 1 Score: 540.4 bits (1391), Expect = 1.100e-149
Identity = 284/689 (41.22%), Postives = 401/689 (58.20%), Query Frame = 0 
Query:  190 SMTGSPVDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGR----KDVTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            ++  + V LP  +Y P    CWS GQ APYLHLA  F+LL     ++    +L NMFRSL+AL+PDDVLP+VYL +NK+A+  E +++N+GGS V+AA+  A GTS  K++ +Y ELGDLGDVAQA R  Q LL  P PL ++ V+  +  ++   G G   RKR ++V L+RSCR  E KFLVRTLV+NLR GA +                                                       YN  P++  ++ +L++ G+    +   +  G P+KPMLA+I +G+ + ++ + ++ FTCE+KYDGQRAQ+H L DGS+ +F R+ ++ T ++PD++ +++      +S  P +          V  ILD E+V VDR  G KL++FQ LS+RGR      +T + + V ICVF FD++F NGQ  L   L  RR  L  LF     G                    AT        K+  F   A  + CEGI+ KSL  +  Y PSKRT++WLKVK+DY+EGL DTLDLVPIGAW+GNGRKAGW+SP L+ACYNPETEE QS+CR MSG +D  Y +   FY  + +I+     Y RT E   +WF P  VWEIRGA+ T+SPVH+A +GLV   +G+S+RFPR+++   D+  ++ +TA+ +AE+F  Q R+++
Sbjct:  743 NVAATSVSLPPEKYNPVDHACWSNGQHAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPDDVLPSVYLCTNKIAADHENVELNIGGSLVTAALEDACGTSRSKIRDMYNELGDLGDVAQACRQTQTLLAPPPPLLIKDVFSALRKISVQTGTGSSARKRSLIVNLLRSCREKEMKFLVRTLVRNLRIGAMM-------------KTVLPALAQAVVLNSFHSCNHEGTIESLKDKLQRHSAAVVEAYNVLPNLDLVIPSLMKRGIGFSSSTLSMVPGIPIKPMLARITNGVQQALKLFENKAFTCEYKYDGQRAQIHKLVDGSMHVFTRNGDESTSRFPDLINIIN------QSCKPDA----------VTFILDAEVVGVDRKNGCKLMSFQELSSRGRGSRDASITLDSIKVNICVFVFDIMFANGQQLLSFPLRRRRKYLKELFYDEKLGYFEYAKEMTVEAEDACLTSEAT------LTKINSFLENAFVSSCEGIIVKSLDVDAGYSPSKRTDTWLKVKRDYMEGLGDTLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDLFYTEMKSFYSGD-KILAKKPPYYRTAEVPDLWFSPELVWEIRGADFTVSPVHQAALGLVHPSRGISIRFPRYIRTVTDRKPDECSTASDLAEMFHSQTRKMD 1395
[Close]
BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_024187825.1 (DNA ligase 6 isoform X1 [Rosa chinensis])

HSP 1 Score: 540.4 bits (1391), Expect = 1.100e-149
Identity = 284/689 (41.22%), Postives = 401/689 (58.20%), Query Frame = 0 
Query:  190 SMTGSPVDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGR----KDVTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            ++  + V LP  +Y P    CWS GQ APYLHLA  F+LL     ++    +L NMFRSL+AL+PDDVLP+VYL +NK+A+  E +++N+GGS V+AA+  A GTS  K++ +Y ELGDLGDVAQA R  Q LL  P PL ++ V+  +  ++   G G   RKR ++V L+RSCR  E KFLVRTLV+NLR GA +                                                       YN  P++  ++ +L++ G+    +   +  G P+KPMLA+I +G+ + ++ + ++ FTCE+KYDGQRAQ+H L DGS+ +F R+ ++ T ++PD++ +++      +S  P +          V  ILD E+V VDR  G KL++FQ LS+RGR      +T + + V ICVF FD++F NGQ  L   L  RR  L  LF     G                    AT        K+  F   A  + CEGI+ KSL  +  Y PSKRT++WLKVK+DY+EGL DTLDLVPIGAW+GNGRKAGW+SP L+ACYNPETEE QS+CR MSG +D  Y +   FY  + +I+     Y RT E   +WF P  VWEIRGA+ T+SPVH+A +GLV   +G+S+RFPR+++   D+  ++ +TA+ +AE+F  Q R+++
Sbjct:  744 NVAATSVSLPPEKYNPVDHACWSNGQHAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPDDVLPSVYLCTNKIAADHENVELNIGGSLVTAALEDACGTSRSKIRDMYNELGDLGDVAQACRQTQTLLAPPPPLLIKDVFSALRKISVQTGTGSSARKRSLIVNLLRSCREKEMKFLVRTLVRNLRIGAMM-------------KTVLPALAQAVVLNSFHSCNHEGTIESLKDKLQRHSAAVVEAYNVLPNLDLVIPSLMKRGIGFSSSTLSMVPGIPIKPMLARITNGVQQALKLFENKAFTCEYKYDGQRAQIHKLVDGSMHVFTRNGDESTSRFPDLINIIN------QSCKPDA----------VTFILDAEVVGVDRKNGCKLMSFQELSSRGRGSRDASITLDSIKVNICVFVFDIMFANGQQLLSFPLRRRRKYLKELFYDEKLGYFEYAKEMTVEAEDACLTSEAT------LTKINSFLENAFVSSCEGIIVKSLDVDAGYSPSKRTDTWLKVKRDYMEGLGDTLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDLFYTEMKSFYSGD-KILAKKPPYYRTAEVPDLWFSPELVWEIRGADFTVSPVHQAALGLVHPSRGISIRFPRYIRTVTDRKPDECSTASDLAEMFHSQTRKMD 1396
[Close]
BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_024187827.1 (DNA ligase 6 isoform X3 [Rosa chinensis])

HSP 1 Score: 540.4 bits (1391), Expect = 1.100e-149
Identity = 284/689 (41.22%), Postives = 401/689 (58.20%), Query Frame = 0 
Query:  190 SMTGSPVDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGR----KDVTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            ++  + V LP  +Y P    CWS GQ APYLHLA  F+LL     ++    +L NMFRSL+AL+PDDVLP+VYL +NK+A+  E +++N+GGS V+AA+  A GTS  K++ +Y ELGDLGDVAQA R  Q LL  P PL ++ V+  +  ++   G G   RKR ++V L+RSCR  E KFLVRTLV+NLR GA +                                                       YN  P++  ++ +L++ G+    +   +  G P+KPMLA+I +G+ + ++ + ++ FTCE+KYDGQRAQ+H L DGS+ +F R+ ++ T ++PD++ +++      +S  P +          V  ILD E+V VDR  G KL++FQ LS+RGR      +T + + V ICVF FD++F NGQ  L   L  RR  L  LF     G                    AT        K+  F   A  + CEGI+ KSL  +  Y PSKRT++WLKVK+DY+EGL DTLDLVPIGAW+GNGRKAGW+SP L+ACYNPETEE QS+CR MSG +D  Y +   FY  + +I+     Y RT E   +WF P  VWEIRGA+ T+SPVH+A +GLV   +G+S+RFPR+++   D+  ++ +TA+ +AE+F  Q R+++
Sbjct:  714 NVAATSVSLPPEKYNPVDHACWSNGQHAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPDDVLPSVYLCTNKIAADHENVELNIGGSLVTAALEDACGTSRSKIRDMYNELGDLGDVAQACRQTQTLLAPPPPLLIKDVFSALRKISVQTGTGSSARKRSLIVNLLRSCREKEMKFLVRTLVRNLRIGAMM-------------KTVLPALAQAVVLNSFHSCNHEGTIESLKDKLQRHSAAVVEAYNVLPNLDLVIPSLMKRGIGFSSSTLSMVPGIPIKPMLARITNGVQQALKLFENKAFTCEYKYDGQRAQIHKLVDGSMHVFTRNGDESTSRFPDLINIIN------QSCKPDA----------VTFILDAEVVGVDRKNGCKLMSFQELSSRGRGSRDASITLDSIKVNICVFVFDIMFANGQQLLSFPLRRRRKYLKELFYDEKLGYFEYAKEMTVEAEDACLTSEAT------LTKINSFLENAFVSSCEGIIVKSLDVDAGYSPSKRTDTWLKVKRDYMEGLGDTLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDLFYTEMKSFYSGD-KILAKKPPYYRTAEVPDLWFSPELVWEIRGADFTVSPVHQAALGLVHPSRGISIRFPRYIRTVTDRKPDECSTASDLAEMFHSQTRKMD 1366
[Close]
BLAST of NO11G03000 vs. NCBI_GenBank
Match: PHU27162.1 (hypothetical protein BC332_05494 [Capsicum chinense])

HSP 1 Score: 540.0 bits (1390), Expect = 1.400e-149
Identity = 302/739 (40.87%), Postives = 423/739 (57.24%), Query Frame = 0 
Query:  154 ERDGKNKSATIPLPTPPTSPSAFFSAAGAASSK------ATASMTGSP--------VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLST--RGRKD--VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            E + +  S T  L  P  +   F S+  A   K      A  S+ G P        V L   +Y P    CWS+GQ APY+HLA  FEL+     ++    +L NMFRSL+AL+P+DVLPAVYL +NK+A   E +++N+GGSTV AA+  A GT   ++++LY  LGDLGDVAQ  R  Q LL  P  LTVRGVY T+  ++   G G   RK+ ++++L+ SCR  E KFLVRTLV+NLR GA +                                                       YN  P +  +V +L+E G+E       +A G P+KPMLAKI +G+P++++ + ++ FTCE+KYDGQRAQ+H L+DGSV++F+R+ ++ T ++PD+V ++ +      S  P            V  ILD E+VA+DR  G+KL++FQ LS+  RG KD  +  + + V IC+F FD++F NG+  L   L  RR  L  LF     G                    AT        ++  F  +AL + CEGIM KSL  +  Y PSKR+++WLKVK+DY+EGL+D+LDLVPIGAWYGNGRKAGW+SP L+ACYNP+TEE QS+CR MSG +D+ Y +   F+ ++ +I      Y RT E   +WF P  VWEIRGA+ T+SPVH A +GLV   +G+S+RFPRF++   D+  E+ +T+A IAE+F  Q R+++
Sbjct:  717 ETNEEEISKTNKLVHPQCAKEVFPSSRDAKLPKILGEDDADLSLCGVPIADNAVNYVSLTPEKYSPVEHACWSKGQAAPYIHLARTFELVKEEKGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAPDHENMELNIGGSTVVAALEEACGTKKSRVRELYNSLGDLGDVAQLCRQTQSLLAPPVALTVRGVYSTLRRISLQAGSGSAIRKKSLIIKLMCSCREKEMKFLVRTLVRNLRIGAMM----------------RTVLPALAQAVVFNSIPHEGLVDNLKDCLQRLSAEAVEAYNILPSLDVLVPSLMEKGVEFSSNTLSMAPGIPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLADGSVRVFSRNGDETTSRFPDLVNIITE------SCGPRG----------VTFILDAEVVAIDRQNGSKLMSFQELSSRERGSKDSIIALDKIKVDICIFVFDIMFTNGEQLLNLPLRQRRKYLKDLFGDGKVGYFEYATEMTVEDNDSCADDEAT------LARMNSFLNDALNSSCEGIMVKSLDLDAGYTPSKRSDAWLKVKRDYVEGLNDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPDTEEYQSVCRVMSGFSDSFYVEMRDFFDAD-KISQKKPPYYRTAEAPDMWFSPEVVWEIRGADFTVSPVHHAAIGLVHPSRGISVRFPRFIRCLSDRKPEECSTSADIAEMFHSQTRKMD 1416
[Close]
BLAST of NO11G03000 vs. NCBI_GenBank
Match: GAV87473.1 (DNA_ligase_A_M domain-containing protein/DNA_ligase_A_N domain-containing protein/DNA_ligase_A_C domain-containing protein/DRMBL domain-containing protein/Lactamase_B_2 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 539.7 bits (1389), Expect = 1.800e-149
Identity = 281/683 (41.14%), Postives = 406/683 (59.44%), Query Frame = 0 
Query:  196 VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLS--TRGRKD--VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSL--SHEYEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            V LP  +Y P    CW+ GQ APY+HLA  FEL+ +   ++    +L NMFRSL+AL+P+DVLPAVYL +NKLA+  E +++N+GGS V++A+  A GTS  K++++Y   GDLGDVAQ  R  Q+LL  P PL +R V+  +  ++   G G   RK+ +++ L+RSCR  E KF+VRTLV+NLR GA +                                                       YN  P++  ++ ++++ G+    +   +  G P+KPMLAKI +G+P+ ++++ +  FTCE+KYDGQRAQ+H L DG+V++F+R+ E+ T ++PD++ ++ +      S  P++          V  ILD E+VAVDR    K+++FQ LS   RG KD  + A+ + V ICVFAFD++F NG+  L   L  RR  L   F     G                    A          ++ F  +A+ + CEGIM KSL    EY PSKRT++WLKVK+DY+EGL+D+LDLVPIGAWYGNGRKAGW+SP L+ACYNPETEE QS+CR MSG +D+ Y +  +F+  +  +   P  Y RT E   +WF P  VWEIRGA+ T+SPVH+A +GLV + +G+S+RFPRF+++  D+  E+ +TAA IAE+F  Q R+++
Sbjct:  746 VSLPPEKYTPIEHACWTVGQPAPYIHLARTFELVEAEKGKIKVTSMLCNMFRSLLALSPEDVLPAVYLCTNKLAADHENMELNIGGSLVASAIEEACGTSRSKIREMYNSFGDLGDVAQQCRQTQKLLAPPPPLLIRDVFSVLRKISVQTGSGSTVRKKSLIMNLMRSCREKEMKFIVRTLVRNLRIGAMM-------------RTVLPAMAQAIVLNSFCNFPLEGMPENLKEKLQCLSAAVVEAYNILPNLDLVIPSIIDKGIGFTSSTLSMVPGIPIKPMLAKIANGVPQALKRFQNIAFTCEYKYDGQRAQIHKLMDGTVRVFSRNGEETTSRFPDLITIIKE------SCKPAA----------VTFILDAEVVAVDRKNDCKIMSFQDLSYRERGSKDSIIPADSIKVNICVFAFDIMFANGEQLLGFPLRQRRKYLKDFFYKEKLG------YFEYAKQMIVEAEDACLTNESLLTNIESFLKDAINSSCEGIMVKSLDVDAEYSPSKRTDTWLKVKRDYVEGLNDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDSFYIEMKEFFSGDKALPKKP-PYYRTAEVPDMWFSPELVWEIRGADFTVSPVHQAALGLVHQSRGISIRFPRFIRIVSDRNPEECSTAADIAEMFHSQTRKMD 1392
[Close]
BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_021823155.1 (DNA ligase 6-like isoform X1 [Prunus avium])

HSP 1 Score: 539.3 bits (1388), Expect = 2.400e-149
Identity = 291/724 (40.19%), Postives = 423/724 (58.43%), Query Frame = 0 
Query:  155 RDGKNKSATIPLPTPPTSPSAFFSAAGAASSKATASMTGSPVDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGR----KDVTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            R GKN++  + + +    P+A  S   +       ++    + LP  +Y P+ D CWS GQ APYLHLA  F+LL     ++    +L NMFRSL+ALAP+DVLP+VYL +NK+A+  E +++N+GGS V++A+  A GTS  K++++Y ELGDLGDVAQA R  Q+LL  P PL ++ V+  +  ++   G G  GRK+ ++V L+RSCR  E KFLVRTLV+NLR GA +                                                       YN  P++  +V +L++ G+    +   +  G P+KPMLAKI +G+P+ ++  G++ FTCE+KYDGQRAQ+H L DGSV++F+R+ ++ T ++PD+++++++      S  P +          V  ILD E+VA+DR  G KL++FQ LS+RGR      +T + + V ICVF FD++F NGQ  L   L  RR  L  LF     G                    AT        K+  F   A  + CEGIM KSL  +  Y PSKRT++WLKVK+DYIEG +D+LDLVPIGAW+GNGRKAGW+SP L+ACYNP+TE+ QS+CR MSG +D+ Y +   F+  + +I+     Y +T E   +WF P  VWEIRGA+ T+SPVH+A VGLV   +G+S+RFPR+++   D+  ++ +T+  IA +F  Q R+++
Sbjct:  693 RSGKNEAGLV-VDSGKMKPTADSSVEVSLQENVKTTV----LSLPPEKYNPTEDACWSCGQRAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALAPEDVLPSVYLCTNKIAADHENVELNIGGSLVTSALEDACGTSRSKIREMYNELGDLGDVAQACRQTQKLLAPPSPLLIKDVFFALQKISVQTGSGSTGRKKSLIVNLMRSCREKEMKFLVRTLVRNLRIGAMM-------------KTVLPALAQAVVMNSSHNLNHEGVVQSWKDRLQRHSAAVVEAYNVLPNLDLVVPSLMDKGIGFSSSTLSMVPGIPIKPMLAKITNGVPQALKLLGNKAFTCEYKYDGQRAQIHKLVDGSVRVFSRNGDESTSRFPDLIKIINE------SCKPDA----------VTFILDAEVVAIDRKNGLKLMSFQELSSRGRGSRDTSITLDSIKVDICVFVFDIMFANGQQLLGFPLRKRRKYLKDLFYDEKLGYFEYAKEMTVEADDACLTSEAT------LTKINCFLENAFLSSCEGIMVKSLDVDAGYSPSKRTDTWLKVKRDYIEGSNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEDFQSVCRVMSGFSDSFYTEMKSFFSGD-KILSRKPPYYKTAEAPDMWFPPELVWEIRGADFTVSPVHQAAVGLVHPSRGISIRFPRYVRTVADRKPDECSTSEDIAAMFCSQTRKMD 1375
[Close]
BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_021823157.1 (DNA ligase 6-like isoform X3 [Prunus avium])

HSP 1 Score: 539.3 bits (1388), Expect = 2.400e-149
Identity = 291/724 (40.19%), Postives = 423/724 (58.43%), Query Frame = 0 
Query:  155 RDGKNKSATIPLPTPPTSPSAFFSAAGAASSKATASMTGSPVDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGR----KDVTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            R GKN++  + + +    P+A  S   +       ++    + LP  +Y P+ D CWS GQ APYLHLA  F+LL     ++    +L NMFRSL+ALAP+DVLP+VYL +NK+A+  E +++N+GGS V++A+  A GTS  K++++Y ELGDLGDVAQA R  Q+LL  P PL ++ V+  +  ++   G G  GRK+ ++V L+RSCR  E KFLVRTLV+NLR GA +                                                       YN  P++  +V +L++ G+    +   +  G P+KPMLAKI +G+P+ ++  G++ FTCE+KYDGQRAQ+H L DGSV++F+R+ ++ T ++PD+++++++      S  P +          V  ILD E+VA+DR  G KL++FQ LS+RGR      +T + + V ICVF FD++F NGQ  L   L  RR  L  LF     G                    AT        K+  F   A  + CEGIM KSL  +  Y PSKRT++WLKVK+DYIEG +D+LDLVPIGAW+GNGRKAGW+SP L+ACYNP+TE+ QS+CR MSG +D+ Y +   F+  + +I+     Y +T E   +WF P  VWEIRGA+ T+SPVH+A VGLV   +G+S+RFPR+++   D+  ++ +T+  IA +F  Q R+++
Sbjct:  467 RSGKNEAGLV-VDSGKMKPTADSSVEVSLQENVKTTV----LSLPPEKYNPTEDACWSCGQRAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALAPEDVLPSVYLCTNKIAADHENVELNIGGSLVTSALEDACGTSRSKIREMYNELGDLGDVAQACRQTQKLLAPPSPLLIKDVFFALQKISVQTGSGSTGRKKSLIVNLMRSCREKEMKFLVRTLVRNLRIGAMM-------------KTVLPALAQAVVMNSSHNLNHEGVVQSWKDRLQRHSAAVVEAYNVLPNLDLVVPSLMDKGIGFSSSTLSMVPGIPIKPMLAKITNGVPQALKLLGNKAFTCEYKYDGQRAQIHKLVDGSVRVFSRNGDESTSRFPDLIKIINE------SCKPDA----------VTFILDAEVVAIDRKNGLKLMSFQELSSRGRGSRDTSITLDSIKVDICVFVFDIMFANGQQLLGFPLRKRRKYLKDLFYDEKLGYFEYAKEMTVEADDACLTSEAT------LTKINCFLENAFLSSCEGIMVKSLDVDAGYSPSKRTDTWLKVKRDYIEGSNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEDFQSVCRVMSGFSDSFYTEMKSFFSGD-KILSRKPPYYKTAEAPDMWFPPELVWEIRGADFTVSPVHQAAVGLVHPSRGISIRFPRYVRTVADRKPDECSTSEDIAAMFCSQTRKMD 1149
The following BLAST results are available for this feature:
BLAST of NO11G03000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_006482181.12.100e-15041.43PREDICTED: DNA ligase 1 isoform X1 [Citrus sinensi... [more]
PHT91330.12.100e-15042.02hypothetical protein T459_06443 [Capsicum annuum][more]
XP_012854511.16.200e-15041.29PREDICTED: LOW QUALITY PROTEIN: DNA ligase 3 [Eryt... [more]
PRQ45643.11.100e-14941.22putative DNA ligase (ATP) [Rosa chinensis][more]
XP_024187825.11.100e-14941.22DNA ligase 6 isoform X1 [Rosa chinensis][more]
XP_024187827.11.100e-14941.22DNA ligase 6 isoform X3 [Rosa chinensis][more]
PHU27162.11.400e-14940.87hypothetical protein BC332_05494 [Capsicum chinens... [more]
GAV87473.11.800e-14941.14DNA_ligase_A_M domain-containing protein/DNA_ligas... [more]
XP_021823155.12.400e-14940.19DNA ligase 6-like isoform X1 [Prunus avium][more]
XP_021823157.12.400e-14940.19DNA ligase 6-like isoform X3 [Prunus avium][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL113nonsL113Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR022ngnoR022Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001953NSK001953Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03000.2NO11G03000.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G03000.1NO11G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591723gene_5201Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100092g20gene5583Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03000.2NO11G03000.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G03000.1NO11G03000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03000 ID=NO11G03000|Name=NO11G03000|organism=Nannochloropsis oceanica|type=gene|length=4920bp
CTGTTGTAAGAAGCGCAGGGCTGTGGCTTGGCCCAGGCCCGAAGCCGCGC
CGGTGACGAGGGCCGTGACGTGACTGAGCACCATGCGTTGCGTAGGTGTG
TAGTCTGTTCTTTTTGTTTTGTTTTGTTTTGTTTTGTTGTTTTGTTTTGT
TTTTGTTTTTTTTGAAAGCTGGTCTTTTAGTTCTTTTTGAGCTACATCTC
TCTAGAACTATCGCATGCAACCTGGTCTTAGGCGATAGCAGCGATCTCAG
ACCGAGCAACGGGGCGTTATTGAGACAGAACCCCATGACATGCACACGTA
GGTATACAACGAAACCACGAAGATTATGATGCATACGTATCATGCCCAGC
TCCGTTTGGTAGTCATGTTGTGGCCTTGGCACATTTTGTTTGCTTGACTC
CACATTCTAATCTTGAAGTTCTTCCATACGCCCCCACCAAGTCGTATGCC
TCCCAAGAAGCGCAAGGCCGCCATGACCAGTGGTGCCAGCCCCGCGACAA
CAAAGGCTAAGGGCACGAACGGATTAGCTGGCAAAGTCCCCTCGACACCT
GGCCAGACGAATATCACTGCCTTTTTCGGTGGGGGCGGCGACGGCGGCGG
CGGCGGGTCGGCTGCTGCTTCTCCTAGCGCTGCTGCTGCCATGGCTGCTG
CCTCTTCTGCAGGCACAAAGAAGCAAAAGAATTCGGCAGAGATGGTGGAT
CTTCTTACCTCGGAAGAAGACGGTGTTCATGACGACGAAGTGGAGGAGGA
GCAACAGGAAGTGCTCCCGCAGATTGACCTGACAGCCACCGAAACAAAAG
AGCGACATGAGACCCAAGCCTTGACCGAGGCCATGGAGAAGCTGCCGGAA
CGCGAAGCCAAGGATTTTGTCGACGAGATGGGCGCTGGCAAACAGCATAA
ACCAGAAAGAGACGGGAAGAATAAATCGGCCACGATACCTTTGCCCACTC
CTCCTACATCTCCCTCAGCCTTCTTCAGTGCCGCCGGTGCCGCTAGCAGC
AAAGCCACCGCCTCCATGACTGGCAGCCCCGTCGACCTTCCGTGTGCACG
TTATCAGCCCTCCTCTGACGGTTGTTGGTCTCGGGGGCAGCTGGCGCCTT
ACTTGCACCTTGCTTGGGCGTTCGAGCTGCTTTGTTCCACCACCCGCCGC
CTGACAAAAGCCGATGTCCTCGTCAACATGTTTCGGTCGCTTATGGCCCT
GGCCCCGGACGACGTCCTCCCTGCTGTGTATTTGTCAAGCAACAAGCTGG
CCTCGTCGTTTGAGGGCATCGATATCAATGTGGGCGGCTCGACGGTGTCT
GCGGCGGTGATTCACGCCACTGGGACGTCGTCAGACAAGATGAAGCAGTT
GTATACGGAGTTGGGgtgagtagggggagaaaggagggaaagggctgatc
aaacgcttgccatcaaataataaattgtattatttatttgcccaatcata
tcggaatcaacctcctgaaatactttcctccctctcctctcttcctccct
tcctaacatagGGATCTCGGGGATGTGGCGCAAGCCCTGCGAGTGAAGCA
GCGCCTCCTCGTGGTCCCTGAGCCCCTGACGGTGCGAGGCGTCTATCAGA
CTATAATCGATATGGCCAGCATGAAAGgtacctcttttttccttcctccc
accctttatagccacggaactagcgttcctcctttccttcctccgtcttt
ccctcccgcgcgtcttcgctcccgcttcccttaatttgactcgcggcatg
tcttccaacaaacgacacctacaatcatacgtacgcaataataagGGCAA
GGATGCGAGGGTCGGAAACGCATGATGATGGTGCGTCTCATTCGCTCGTG
TCGAGGCCCCGAAGCCAAGTTCCTAGgtgagtcttgccctacgttccctc
cttcccccccccccctccctctatcctattttttccttccttccttcctt
ctttccttacattcttaatctaaggctaggcggtatgtaggggaggaggt
ggtagtgggacgatgggacagggggtaaatggttcactgtacatgcatgc
atggtgatataaatttcgctggtggtgatattaccatggccgccgtcatg
cactgtttaatcaatgcgaaaggtacctcttatcctccgtccctctttcc
atttctcactgctttccttcccccctccttccctccctctttcatctctc
ctccctccctccctccctccctccctccccccccccgacccaagTCCGCA
CCCTCGTCCAGAATCTCCGCACGGGCGCAACACTCACCAGTGTACTGGCA
GCTCTTGCCATGGCCGCCGTCATGCACCACGCCGAGCGGGAGAAGGAGGG
AGGGACCGAGGGAGGGACCGAGGGAGGGACGGGGAGGGGGAGGGGGAAGG
CAGTGATGGAGGCACGGTTGAAGGCGGCGCAGGTGGCAGTTAAGGAATGC
TACAACTGCTGgtataagcttcccttcgccctccccccttccatctctct
ctatgtccattccttttactttccactaaatcgaagactctaaaatcctg
catacccctccctccctcccttcctccctccctccctgcctgctaccttt
ctctcttcctcagTCCCGACATTCCCCGCATCGTCAAGGCCCTGGTAGAG
GGCGGTTTGGAAGCCATGCAGACGGCCTGTGAGGTAGCTGTAGGCACGCC
GGTCAAACCTATGCTTGCCAAGATCTGCAGgtagggagggagggaaagga
gggggggggaaagagggcgttgtgtagattttcctgccagatgactgatc
ctttcctccctccttccctccctcccttccttcctcctttcctttcttac
tccctaagCGGTATTCCTGAGCTCATGGAGAAATACGGTTCCGAGCCGTT
TACTTGTGAATTCAAATACGACGGCCAACGGGCCCAAGTACACCTCCTCA
GCGACGGGAGCGTCAAGATTTTCAATCGCCATATCGAGgtccgtaccctc
cactctccctatcaccctccctccctctctccttccttccatttttccct
tccttcacttcacgctcttttcctcttcccgtacaccccttttcacctct
ccctccctccctccctccctccctccctccctccttccctcccctcccag
GACATGACTGACAAATACCCTGACGTCGTCCAGCTGATGCACGACCTGCA
ACGAGCCCTCCGTTCCTCCCCCCCTTCCTCTCTCCCTCCCTCCCCCTCCG
AGCAACCGTTGGTAGACGTCATCCTGGACACAGAACTCGTGGCTGTGGAC
CGAGCGCAGGGCAACAAGCTCCTGGCCTTTCAGACGTTGTCAACCCGAGG
ACGgtatgaagggagggagggaaagaagtgagggaggagggagggaggga
gggagggaggggatgcgcggtgttcagaactatgacctcttgtcaatcct
tgtctttttccctccctccctccctctccctccctccctccctccctctc
tccctccctccctccctccgtcgcagCAAGGACGTGACCGCCGAGGGGGT
CACGGTGCAAATCTGCGTGTTTGCCTTTGATCTCCTCTTCCTCAATGGGC
AGTCGCATCTCAAGGAGCATCTTGAATCCCGGCGAACCCTCCTGTACTCC
CTCTTTGCACCTGTGGTGGAGGGAGGGAAGGAGAGAGGGAAGGAGGGAGG
GAAGGAGGGGGGGTTTGAAGGTCGTTTTGACTTTGCGACCCATAGAGAGA
CGAAGGACCCGGAAAAGGTGCAGGAATTTTTCACAGAAGCTTTGGAGGCA
GGATGCGAAGGGATCATGGTGAGGGAGGGGGGGAGGGAGGGAGGGAGGGT
GATTGTATGTATATACCGTTAATAGGGCACGATTTCTCTCATTCTTGCTC
TCTGCTTCCCCCGCTCTCCTTCCTTTCAAACTAGTGCAAGTCCCTCTCCC
ACGAGTATGAGCCGTCCAAGCGGACTGAATCCTGGCTGAAGGTGAAGAAA
GATTACATCGAGGGTTTGCATGACACTCTCGACCTGGTCCCTATCGGCGC
CTGgtacatacccctccatccctccctccatccctccctccatccctccc
tccatttctccttccatccctctcttcccccgtccctgcgcttttcttcc
agtctaggcgcatgcccttctttcttctttgtcttgtcgtccgatcctct
ttttccctccctccctccctccctttcctacagGTACGGCAACGGCCGCA
AGGCCGGTTGGTTCTCTCCCATCCTCCTCGCCTGCTACAACCCCGAGACC
GAAGAGCTCCAGTCCCTCTGTCGGTGCATGTCGGGATTAACCGATGCCAT
GTACGCCGACACCACCAAATTTTATCAGAGTGAGGGGAGGATCATTGACG
CGCCTAAGAGTTACGTCAGGACAGGGGAGACGTGCCCGATATGGTTCGAC
CCCTGTCAGGTTTGGGAGATACGGGGGGCGGAACTGACCATAAGCCCGGT
GCATAAGGCAGGGGTGGGGTTGGTAGACAAGCAGAAGGGGATGAGTTTGA
GGTTTCCGCGCTTTTTGAAGGTGAGGGAGGATAAGGGGGTGGAGGACGCA
ACGACTGCGGCGCAGATAGCAGAGTTGTTCAGGATGCAGATTAGGAGGGT
AGAGGTGGAGGGGGATGGGGAGGGTAAAGGAGGGGGCGGAGGGAAGCAGA
AGGTGGCAGCGGAGGAAGAGGAAGGAGGAGGGGTCGAGGAAGCGGAAGAT
TACTGGGAAGATATTTTGTAAGTGGAGGGTGTAAGAGGGGAGGTAGAGTT
TAATGATTCAAAGAGAAGGACGAGGACATAGCTAGTGTACAGCAAGCCCT
GGACCGACAAGCAGCCCGTGGCATATGCCAATGGGACGCAAAGAAGAAGA
AAACTGAAGATAGTCCCGTG
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protein sequence of NO11G03000.2

>NO11G03000.2-protein ID=NO11G03000.2-protein|Name=NO11G03000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=710bp
MPPKKRKAAMTSGASPATTKAKGTNGLAGKVPSTPGQTNITAFFGGGGDG
GGGGSAAASPSAAAAMAAASSAGTKKQKNSAEMVDLLTSEEDGVHDDEVE
EEQQEVLPQIDLTATETKERHETQALTEAMEKLPEREAKDFVDEMGAGKQ
HKPERDGKNKSATIPLPTPPTSPSAFFSAAGAASSKATASMTGSPVDLPC
ARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLM
ALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMK
QLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCE
GRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLTSVLAALAMAAVMH
HAEREKEGGTEGGTEGGTGRGRGKAVMEARLKAAQVAVKECYNCCPDIPR
IVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTC
EFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSS
PPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGRKDVTA
EGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGKERGK
EGGKEGGFEGRFDFATHRETKDPEKVQEFFTEALEAGCEGIMVREGGREG
GRVIVCIYR*
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protein sequence of NO11G03000.1

>NO11G03000.1-protein ID=NO11G03000.1-protein|Name=NO11G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=911bp
MPPKKRKAAMTSGASPATTKAKGTNGLAGKVPSTPGQTNITAFFGGGGDG
GGGGSAAASPSAAAAMAAASSAGTKKQKNSAEMVDLLTSEEDGVHDDEVE
EEQQEVLPQIDLTATETKERHETQALTEAMEKLPEREAKDFVDEMGAGKQ
HKPERDGKNKSATIPLPTPPTSPSAFFSAAGAASSKATASMTGSPVDLPC
ARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLM
ALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMK
QLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCE
GRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLTSVLAALAMAAVMH
HAEREKEGGTEGGTEGGTGRGRGKAVMEARLKAAQVAVKECYNCCPDIPR
IVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTC
EFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSS
PPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGRKDVTA
EGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGKERGK
EGGKEGGFEGRFDFATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHEY
EPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACY
NPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCP
IWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKG
VEDATTAAQIAELFRMQIRRVEVEGDGEGKGGGGGKQKVAAEEEEGGGVE
EAEDYWEDIL*
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Synonyms
Publications